Wall clock time and date at job start Wed Apr 1 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34667 * 125.98973 * 2 1 4 4 N 1.36885 * 106.81684 * 180.12097 * 3 2 1 5 5 C 1.46498 * 126.39712 * 179.84680 * 4 3 2 6 6 C 1.53001 * 109.47424 * 50.40489 * 5 4 3 7 7 C 1.53004 * 109.46959 * 290.40442 * 5 4 3 8 8 C 1.50697 * 109.47067 * 170.40349 * 5 4 3 9 9 O 1.21287 * 119.99993 * 127.12751 * 8 5 4 10 10 N 1.34772 * 120.00259 * 307.13790 * 8 5 4 11 11 C 1.46894 * 120.46823 * 176.52755 * 10 8 5 12 12 C 1.53353 * 108.74215 * 124.33574 * 11 10 8 13 13 C 1.52557 * 109.12676 * 52.26802 * 12 11 10 14 14 C 1.52958 * 114.06575 * 75.53861 * 13 12 11 15 15 N 1.47161 * 87.85477 * 139.44212 * 14 13 12 16 16 C 1.36938 * 136.00459 * 153.33464 * 15 14 13 17 17 H 1.08004 * 119.99639 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00193 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47159 * 89.99851 * 20 18 16 22 22 H 1.48495 * 109.47235 * 210.00650 * 20 18 16 23 23 H 1.48499 * 109.46825 * 330.00447 * 20 18 16 24 24 C 1.47168 * 87.99795 * 333.33834 * 15 14 13 25 25 C 1.52557 * 113.42816 * 302.66605 * 13 12 11 26 26 C 1.46891 * 120.46173 * 356.49868 * 10 8 5 27 27 C 1.35044 * 107.20206 * 359.58299 * 4 3 2 28 28 N 1.30495 * 108.70016 * 0.26227 * 27 4 3 29 29 H 1.09007 * 109.47215 * 270.33127 * 1 2 3 30 30 H 1.09001 * 109.47406 * 30.32628 * 1 2 3 31 31 H 1.08995 * 109.47620 * 150.32687 * 1 2 3 32 32 H 1.08001 * 126.59320 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46929 * 189.66375 * 6 5 4 34 34 H 1.08999 * 109.46477 * 309.65953 * 6 5 4 35 35 H 1.08993 * 109.46904 * 69.65652 * 6 5 4 36 36 H 1.09001 * 109.46676 * 295.58463 * 7 5 4 37 37 H 1.08997 * 109.46969 * 55.58330 * 7 5 4 38 38 H 1.08997 * 109.47202 * 175.58836 * 7 5 4 39 39 H 1.09000 * 109.58738 * 4.56566 * 11 10 8 40 40 H 1.09000 * 109.59262 * 244.11795 * 11 10 8 41 41 H 1.08999 * 109.53433 * 292.36790 * 12 11 10 42 42 H 1.09006 * 109.52961 * 172.15600 * 12 11 10 43 43 H 1.08994 * 113.49021 * 24.69501 * 14 13 12 44 44 H 1.09001 * 113.48987 * 254.19219 * 14 13 12 45 45 H 0.97005 * 119.99976 * 179.97438 * 19 18 16 46 46 H 1.09005 * 113.49088 * 141.41502 * 24 15 14 47 47 H 1.09007 * 113.48733 * 271.92020 * 24 15 14 48 48 H 1.09004 * 109.52483 * 177.21547 * 25 13 12 49 49 H 1.09003 * 109.52731 * 297.42029 * 25 13 12 50 50 H 1.08996 * 109.58769 * 355.43274 * 26 10 8 51 51 H 1.09008 * 109.58762 * 115.87026 * 26 10 8 52 52 H 1.08006 * 125.64717 * 180.29824 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 -0.0028 5 6 4.7996 1.4684 -0.0070 6 6 4.7034 2.5165 1.1035 7 6 4.9324 2.1698 -1.3602 8 6 6.0066 0.5972 0.2279 9 8 6.9443 0.6402 -0.5402 10 7 6.0441 -0.2299 1.2913 11 6 7.1815 -1.1384 1.4886 12 6 7.7806 -0.8835 2.8770 13 6 6.6708 -0.9553 3.9213 14 6 6.2086 -2.3773 4.2436 15 7 6.1418 -1.9759 5.6578 16 6 5.4325 -2.3693 6.7611 17 1 4.7123 -3.1703 6.6826 18 6 5.6398 -1.7392 7.9804 19 7 6.5178 -0.7633 8.0762 20 14 4.6726 -2.2764 9.4856 21 1 5.4160 -3.3486 10.1950 22 1 4.4879 -1.1171 10.3950 23 1 3.3451 -2.7907 9.0634 24 6 7.1719 -0.9660 5.3662 25 6 5.5314 0.0260 3.6639 26 6 4.9485 -0.2350 2.2698 27 6 3.5449 -0.7096 0.0050 28 7 2.2952 -1.0852 0.0066 29 1 -0.3634 0.0059 1.0277 30 1 -0.3634 0.8870 -0.5189 31 1 -0.3634 -0.8928 -0.5087 32 1 1.9751 2.1201 -0.0004 33 1 5.5139 3.2370 0.9942 34 1 3.7461 3.0331 1.0334 35 1 4.7814 2.0261 2.0737 36 1 5.0796 1.4251 -2.1425 37 1 4.0251 2.7379 -1.5655 38 1 5.7870 2.8459 -1.3368 39 1 7.9361 -0.9504 0.7248 40 1 6.8400 -2.1714 1.4218 41 1 8.2394 0.1050 2.9002 42 1 8.5340 -1.6410 3.0935 43 1 6.9649 -3.1360 4.0426 44 1 5.2372 -2.6258 3.8161 45 1 6.6623 -0.3228 8.9282 46 1 7.0145 -0.0217 5.8876 47 1 8.1900 -1.3413 5.4702 48 1 4.7543 -0.1127 4.4156 49 1 5.9110 1.0466 3.7150 50 1 4.2324 0.5480 2.0206 51 1 4.4517 -1.2052 2.2571 52 1 4.4004 -1.3688 0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035730500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:18 Heat of formation + Delta-G solvation = 88.136974 kcal Electronic energy + Delta-G solvation = -32842.363467 eV Core-core repulsion = 28845.057255 eV Total energy + Delta-G solvation = -3997.306212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.62193 -41.67682 -40.47782 -37.36137 -37.01316 -34.47373 -32.77636 -32.53428 -32.00847 -31.40573 -28.91910 -28.51995 -27.77663 -26.66024 -25.71238 -24.53482 -24.04165 -23.13837 -22.26643 -21.09936 -20.48053 -19.24890 -18.74750 -18.51318 -17.49362 -16.89510 -16.81117 -16.44081 -16.25007 -16.00989 -15.68103 -15.58489 -15.18965 -15.08768 -14.78620 -14.53252 -14.34199 -14.21245 -13.94410 -13.76612 -13.64964 -13.43143 -13.31550 -13.21165 -13.19601 -12.97792 -12.93831 -12.86226 -12.80647 -12.65292 -12.38097 -12.20313 -12.18525 -11.74862 -11.67419 -11.19264 -11.05370 -10.95494 -10.87718 -10.82584 -10.50520 -9.78101 -9.22291 -8.90054 -7.90661 -5.22943 0.99429 1.08199 1.44594 1.45754 1.54445 1.70176 1.89544 2.15616 2.46683 2.91591 3.30614 3.42983 3.52197 3.53660 3.64119 3.67656 3.74585 3.85161 4.01243 4.07035 4.23809 4.29958 4.33981 4.42538 4.47941 4.52288 4.57270 4.59321 4.63923 4.67931 4.69487 4.78422 4.78874 4.86840 4.96917 4.97222 5.03108 5.05633 5.09129 5.11641 5.14820 5.19789 5.24779 5.28250 5.30123 5.39431 5.55086 5.70245 5.88526 5.93960 6.12254 6.17185 6.81540 6.91694 7.14260 7.60638 8.62408 9.26638 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003479 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.003446 B = 8045.340388 C = 9350.459210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.028 4.028 3 C -0.037 4.037 4 N -0.447 5.447 5 C 0.149 3.851 6 C -0.170 4.170 7 C -0.135 4.135 8 C 0.515 3.485 9 O -0.551 6.551 10 N -0.594 5.594 11 C 0.116 3.884 12 C -0.104 4.104 13 C -0.085 4.085 14 C 0.128 3.872 15 N -0.636 5.636 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.063 4.063 19 N -0.951 5.951 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.163 3.837 25 C -0.087 4.087 26 C 0.111 3.889 27 C 0.175 3.825 28 N -0.520 5.520 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.209 0.791 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.247 0.753 46 H 0.035 0.965 47 H 0.012 0.988 48 H 0.057 0.943 49 H 0.067 0.933 50 H 0.104 0.896 51 H 0.069 0.931 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 9.022 -20.188 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.156 4.156 3 C -0.169 4.169 4 N -0.132 5.132 5 C 0.062 3.938 6 C -0.227 4.227 7 C -0.193 4.193 8 C 0.302 3.698 9 O -0.428 6.428 10 N -0.326 5.326 11 C -0.006 4.006 12 C -0.143 4.143 13 C -0.087 4.087 14 C 0.003 3.997 15 N -0.362 5.362 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.256 4.256 19 N -0.600 5.600 20 Si 0.802 3.198 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.038 3.962 25 C -0.125 4.125 26 C -0.011 4.011 27 C -0.107 4.107 28 N -0.240 5.240 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.030 0.970 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.122 0.878 51 H 0.087 0.913 52 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.838 8.288 -20.251 22.647 hybrid contribution 0.416 0.011 1.594 1.648 sum -5.422 8.299 -18.657 21.127 Atomic orbital electron populations 1.20065 0.86296 1.03221 1.02535 1.21242 0.97712 0.88524 1.08112 1.22822 0.81612 1.01613 1.10857 1.45727 1.06417 1.06811 1.54285 1.21160 0.80321 0.91050 1.01293 1.22541 1.06418 0.97704 0.96061 1.21990 1.04723 1.00679 0.91936 1.20516 0.88532 0.80011 0.80752 1.90719 1.38384 1.66972 1.46757 1.48225 1.22236 1.38385 1.23750 1.21723 0.88329 0.93235 0.97306 1.21652 0.96809 1.02944 0.92888 1.21836 0.96303 0.95903 0.94627 1.22543 0.98207 0.94752 0.84160 1.45897 1.43681 1.40938 1.05674 1.19286 1.14816 1.14424 0.86949 0.90172 1.25539 1.00763 0.99179 1.00148 1.70012 1.38463 1.26947 1.24599 0.85144 0.78515 0.76782 0.79328 1.21571 1.21951 1.19340 1.22009 0.90444 0.92977 0.90816 1.21319 0.97131 0.98293 0.95759 1.22176 0.88476 1.03305 0.87127 1.24884 0.96803 0.82800 1.06172 1.70196 1.01076 1.32019 1.20711 0.91318 0.88962 0.92265 0.77444 0.88461 0.87730 0.91142 0.92730 0.88709 0.89218 0.88588 0.89931 0.91372 0.89757 0.93973 0.93864 0.94379 0.94614 0.96978 0.92422 0.91393 0.87798 0.91254 0.78904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.42 71.24 0.74 -0.28 16 2 C -0.03 -0.60 7.09 41.39 0.29 -0.31 16 3 C -0.04 -0.62 10.39 83.09 0.86 0.24 16 4 N -0.45 -8.45 1.46 -488.71 -0.71 -9.17 16 5 C 0.15 2.54 0.79 2.86 0.00 2.54 16 6 C -0.17 -2.29 8.08 71.98 0.58 -1.70 16 7 C -0.14 -1.93 7.97 71.98 0.57 -1.36 16 8 C 0.52 11.75 5.70 87.66 0.50 12.25 16 9 O -0.55 -15.38 15.40 -3.05 -0.05 -15.43 16 10 N -0.59 -13.64 2.10 -818.46 -1.72 -15.36 16 11 C 0.12 2.66 6.35 86.42 0.55 3.21 16 12 C -0.10 -2.75 5.30 30.57 0.16 -2.59 16 13 C -0.09 -2.89 0.84 -52.51 -0.04 -2.94 16 14 C 0.13 4.97 7.63 83.32 0.64 5.61 16 15 N -0.64 -32.10 3.55 -738.17 -2.62 -34.72 16 16 C -0.23 -12.70 10.74 84.03 0.90 -11.79 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 19 N -0.95 -57.15 11.51 21.65 0.25 -56.90 16 20 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.16 7.54 6.54 83.31 0.55 8.09 16 25 C -0.09 -2.70 5.07 30.56 0.15 -2.54 16 26 C 0.11 2.74 3.37 86.42 0.29 3.03 16 27 C 0.18 4.24 8.76 180.26 1.58 5.82 16 28 N -0.52 -14.29 11.25 -188.32 -2.12 -16.41 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.21 1.81 7.72 -2.91 -0.02 1.79 16 33 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.10 0.92 7.24 -2.39 -0.02 0.90 16 35 H 0.07 1.20 4.70 -2.39 -0.01 1.19 16 36 H 0.05 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.09 0.91 8.04 -2.39 -0.02 0.89 16 38 H 0.09 1.21 8.11 -2.39 -0.02 1.19 16 39 H 0.10 2.20 6.97 -2.39 -0.02 2.18 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.15 8.09 -2.38 -0.02 2.13 16 43 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 44 H 0.04 1.62 7.53 -2.39 -0.02 1.60 16 45 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 46 H 0.04 1.88 7.11 -2.38 -0.02 1.86 16 47 H 0.01 0.59 8.10 -2.38 -0.02 0.57 16 48 H 0.06 2.20 7.95 -2.39 -0.02 2.18 16 49 H 0.07 2.01 7.69 -2.39 -0.02 1.99 16 50 H 0.10 2.32 3.38 -2.39 -0.01 2.31 16 51 H 0.07 1.89 6.78 -2.38 -0.02 1.87 16 52 H 0.19 4.66 6.58 -2.91 -0.02 4.64 16 Total: -1.00 -72.40 393.76 4.77 -67.63 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.91 Total: 18.44 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 8.80 Total: 14.13 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -6.92 Total: -132.56 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.05 Total: -15.43 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -72.40 4.77 -67.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035730500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.766 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds