Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34673 * 125.98620 * 2 1 4 4 N 1.36880 * 106.81808 * 180.11919 * 3 2 1 5 5 C 1.46497 * 126.40082 * 179.84323 * 4 3 2 6 6 C 1.53005 * 109.47124 * 52.09498 * 5 4 3 7 7 C 1.53000 * 109.47136 * 292.09548 * 5 4 3 8 8 C 1.50704 * 109.47419 * 172.09113 * 5 4 3 9 9 O 1.21285 * 119.99868 * 121.05988 * 8 5 4 10 10 N 1.34772 * 119.99824 * 300.79664 * 8 5 4 11 11 C 1.47216 * 121.36466 * 4.05621 * 10 8 5 12 12 C 1.52755 * 107.76142 * 238.09810 * 11 10 8 13 13 C 1.53157 * 110.84150 * 302.11188 * 12 11 10 14 14 H 1.08998 * 111.80434 * 289.11402 * 13 12 11 15 15 C 1.53937 * 110.88231 * 54.70176 * 13 12 11 16 16 H 1.09003 * 109.51280 * 188.81169 * 15 13 12 17 17 C 1.54198 * 102.21130 * 72.76285 * 15 13 12 18 18 C 1.54715 * 102.06418 * 37.57348 * 17 15 13 19 19 N 1.48569 * 107.41186 * 338.47838 * 18 17 15 20 20 C 1.36933 * 126.60772 * 176.14266 * 19 18 17 21 21 H 1.08005 * 119.99657 * 180.15608 * 20 19 18 22 22 C 1.38813 * 120.00578 * 0.15960 * 20 19 18 23 23 N 1.31620 * 119.99299 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00260 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46978 * 59.99882 * 24 22 20 26 26 H 1.48500 * 109.46892 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46890 * 299.99893 * 24 22 20 28 28 C 1.46717 * 121.35964 * 183.78147 * 10 8 5 29 29 C 1.35047 * 107.20334 * 359.58463 * 4 3 2 30 30 N 1.30497 * 108.69906 * 0.25658 * 29 4 3 31 31 H 1.08998 * 109.47037 * 270.32767 * 1 2 3 32 32 H 1.09000 * 109.47722 * 30.32886 * 1 2 3 33 33 H 1.09004 * 109.46972 * 150.32792 * 1 2 3 34 34 H 1.08007 * 126.59404 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47163 * 186.27206 * 6 5 4 36 36 H 1.09006 * 109.46558 * 306.27055 * 6 5 4 37 37 H 1.08997 * 109.47431 * 66.26571 * 6 5 4 38 38 H 1.08999 * 109.47061 * 295.54544 * 7 5 4 39 39 H 1.08996 * 109.47065 * 55.54540 * 7 5 4 40 40 H 1.09003 * 109.46933 * 175.54881 * 7 5 4 41 41 H 1.08999 * 109.80110 * 357.66026 * 11 10 8 42 42 H 1.08999 * 109.80011 * 118.52698 * 11 10 8 43 43 H 1.08993 * 109.20536 * 62.46651 * 12 11 10 44 44 H 1.09000 * 109.20398 * 181.77004 * 12 11 10 45 45 H 1.09007 * 110.91204 * 155.75998 * 17 15 13 46 46 H 1.09002 * 110.91394 * 279.34292 * 17 15 13 47 47 H 1.08997 * 109.89332 * 97.88488 * 18 17 15 48 48 H 1.09007 * 109.88790 * 219.06840 * 18 17 15 49 49 H 0.97006 * 119.99579 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.14551 * 248.21673 * 28 10 8 51 51 H 1.09000 * 109.14196 * 7.36500 * 28 10 8 52 52 H 1.08001 * 125.65122 * 180.30295 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6403 -0.0027 5 6 4.7995 1.4686 -0.0070 6 6 4.7220 2.4895 1.1301 7 6 4.9099 2.2027 -1.3448 8 6 6.0102 0.5922 0.1866 9 8 6.8851 0.5726 -0.6531 10 7 6.1230 -0.1658 1.2952 11 6 5.0429 -0.2287 2.2936 12 6 5.6211 0.2200 3.6344 13 6 6.8071 -0.6608 4.0386 14 1 6.4882 -1.6636 4.3229 15 6 7.8718 -0.6913 2.9272 16 1 8.6263 -1.4407 3.1663 17 6 8.4928 0.7162 3.0318 18 6 8.4998 0.9538 4.5606 19 7 7.4858 0.0459 5.1562 20 6 7.2200 -0.1188 6.4894 21 1 6.4565 -0.8141 6.8058 22 6 7.9316 0.6079 7.4341 23 7 8.8616 1.4556 7.0483 24 14 7.5684 0.3836 9.2527 25 1 7.8070 -1.0316 9.6342 26 1 8.4577 1.2680 10.0477 27 1 6.1512 0.7366 9.5216 28 6 7.3248 -0.9668 1.5535 29 6 3.5450 -0.7094 0.0051 30 7 2.2953 -1.0851 0.0067 31 1 -0.3633 0.0059 1.0276 32 1 -0.3634 0.8870 -0.5189 33 1 -0.3633 -0.8929 -0.5088 34 1 1.9750 2.1202 -0.0004 35 1 5.5653 3.1765 1.0596 36 1 3.7899 3.0492 1.0528 37 1 4.7556 1.9701 2.0877 38 1 5.0446 1.4773 -2.1472 39 1 3.9993 2.7750 -1.5215 40 1 5.7647 2.8786 -1.3189 41 1 4.2303 0.4362 2.0009 42 1 4.6736 -1.2510 2.3742 43 1 5.9542 1.2546 3.5531 44 1 4.8474 0.1524 4.3992 45 1 9.5069 0.7247 2.6321 46 1 7.8709 1.4545 2.5255 47 1 9.4848 0.7246 4.9670 48 1 8.2395 1.9902 4.7759 49 1 9.3586 1.9637 7.7084 50 1 7.0723 -2.0244 1.4788 51 1 8.0814 -0.7271 0.8064 52 1 4.4005 -1.3685 0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = 76.503111 kcal Electronic energy + Delta-G solvation = -33139.868775 eV Core-core repulsion = 29142.058081 eV Total energy + Delta-G solvation = -3997.810694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72244 -40.49090 -38.56425 -36.12322 -35.38058 -32.66357 -32.04788 -31.56835 -30.63245 -29.61436 -28.53883 -27.64590 -27.01601 -25.46716 -24.09137 -22.90503 -22.78270 -21.76299 -20.30945 -20.13048 -19.51658 -18.24014 -18.05433 -16.89344 -16.50234 -15.90462 -15.59747 -15.09459 -14.85338 -14.70415 -14.42467 -14.15028 -14.06221 -13.84950 -13.55351 -13.42029 -13.14949 -12.94342 -12.89358 -12.70235 -12.59653 -12.50568 -12.30886 -12.17261 -11.99312 -11.83737 -11.66342 -11.51872 -11.32029 -11.16669 -10.86849 -10.76595 -10.17093 -10.13549 -10.02511 -9.97988 -9.83877 -9.77056 -9.66428 -9.54568 -8.74046 -8.61896 -8.43453 -6.91074 -5.75991 -3.09212 1.88727 1.95064 2.71244 2.84756 3.00460 3.36836 3.41603 3.42605 3.89019 4.35993 4.41456 4.43985 4.47243 4.63320 4.90752 4.99270 5.07787 5.13502 5.18060 5.23031 5.28635 5.32726 5.34781 5.37914 5.39129 5.50870 5.54116 5.58508 5.68845 5.71518 5.73902 5.78686 5.79965 5.86127 5.87247 5.98542 6.09381 6.16172 6.16554 6.26862 6.40879 6.50382 6.61281 6.62948 6.79532 6.96162 6.98803 7.25624 7.47961 7.53987 7.75560 7.87932 7.96831 8.16302 9.13675 9.74961 10.43730 11.36232 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003395 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.060930 B = 8245.857207 C = 9170.410193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.051 4.051 4 N -0.448 5.448 5 C 0.147 3.853 6 C -0.173 4.173 7 C -0.140 4.140 8 C 0.518 3.482 9 O -0.526 6.526 10 N -0.593 5.593 11 C 0.090 3.910 12 C -0.143 4.143 13 C 0.167 3.833 14 H 0.061 0.939 15 C -0.114 4.114 16 H 0.083 0.917 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.601 5.601 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.125 3.875 29 C 0.190 3.810 30 N -0.487 5.487 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.172 0.828 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.252 0.748 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 0.911 -15.829 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.183 4.183 4 N -0.134 5.134 5 C 0.059 3.941 6 C -0.231 4.231 7 C -0.198 4.198 8 C 0.303 3.697 9 O -0.402 6.402 10 N -0.325 5.325 11 C -0.033 4.033 12 C -0.184 4.184 13 C 0.059 3.941 14 H 0.079 0.921 15 C -0.134 4.134 16 H 0.102 0.898 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.325 5.325 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.003 3.997 29 C -0.092 4.092 30 N -0.206 5.206 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.189 0.811 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.108 0.892 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.600 0.283 -16.012 19.205 hybrid contribution 0.260 0.865 1.202 1.503 sum -10.340 1.148 -14.810 18.099 Atomic orbital electron populations 1.20001 0.87752 1.02406 1.02164 1.20718 0.96452 0.88473 1.07459 1.22318 0.82556 1.00481 1.12906 1.45682 1.05875 1.07374 1.54449 1.21111 0.81641 0.91470 0.99862 1.22548 1.04348 0.98491 0.97696 1.21986 1.03263 1.00727 0.93847 1.19986 0.87618 0.80150 0.81909 1.90730 1.41710 1.65119 1.42611 1.48188 1.18789 1.44760 1.20758 1.22377 0.89223 1.02525 0.89203 1.22570 1.00029 1.01776 0.93991 1.21120 0.90457 0.94656 0.87867 0.92127 1.21785 0.99096 0.99117 0.93365 0.89839 1.22749 0.99158 0.95360 1.00051 1.21415 0.93647 0.93883 0.85772 1.45220 1.40604 1.46145 1.00535 1.18981 1.16346 1.19919 0.80262 0.90507 1.24778 0.98591 0.99031 0.97934 1.69937 1.25835 1.28928 1.32175 0.86232 0.77407 0.77377 0.84931 1.21174 1.21649 1.21224 1.21015 0.86773 0.94113 0.97829 1.24951 0.97116 0.81921 1.05198 1.70225 1.00111 1.30320 1.19909 0.91439 0.91558 0.91335 0.81058 0.89650 0.90397 0.89260 0.90973 0.91138 0.89801 0.89462 0.90688 0.91371 0.91213 0.92293 0.92891 0.93085 0.94647 0.93733 0.91564 0.89188 0.78507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.01 0.38 -0.18 16 2 C 0.00 -0.03 7.09 -82.85 -0.59 -0.61 16 3 C -0.05 -0.51 10.39 -16.56 -0.17 -0.68 16 4 N -0.45 -4.88 1.48 -105.82 -0.16 -5.03 16 5 C 0.15 1.57 0.79 -132.97 -0.10 1.46 16 6 C -0.17 -1.70 8.09 37.16 0.30 -1.40 16 7 C -0.14 -1.33 7.99 37.16 0.30 -1.03 16 8 C 0.52 6.85 5.57 -10.99 -0.06 6.78 16 9 O -0.53 -8.32 15.42 5.55 0.09 -8.23 16 10 N -0.59 -7.66 2.15 -174.63 -0.38 -8.03 16 11 C 0.09 1.14 3.47 -3.78 -0.01 1.13 16 12 C -0.14 -2.30 4.83 -26.78 -0.13 -2.43 16 13 C 0.17 3.06 3.60 -66.18 -0.24 2.83 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.11 -1.83 2.89 -90.80 -0.26 -2.09 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.13 -2.42 5.84 -25.20 -0.15 -2.56 16 18 C 0.18 4.09 5.14 -2.00 -0.01 4.08 16 19 N -0.60 -14.22 2.93 -160.68 -0.47 -14.69 16 20 C -0.23 -6.02 10.31 -15.06 -0.16 -6.17 16 21 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.43 10.46 55.49 0.58 -25.85 16 24 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 C 0.12 1.68 5.78 -5.22 -0.03 1.65 16 29 C 0.19 2.36 9.12 -90.37 -0.82 1.53 16 30 N -0.49 -6.61 11.25 -10.87 -0.12 -6.74 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.23 7.83 -52.48 -0.41 0.82 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.61 7.44 -51.93 -0.39 0.23 16 37 H 0.09 1.03 3.93 -51.93 -0.20 0.82 16 38 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 39 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.07 3.47 -51.93 -0.18 0.89 16 42 H 0.07 0.94 7.92 -51.93 -0.41 0.52 16 43 H 0.07 1.21 6.07 -51.93 -0.32 0.90 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.93 7.37 -51.93 -0.38 0.55 16 47 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 48 H 0.04 0.91 7.72 -51.93 -0.40 0.51 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 1.26 7.06 -51.93 -0.37 0.90 16 52 H 0.20 2.37 6.76 -52.49 -0.35 2.01 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.14 387.83 -9.89 -41.03 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.40 Total: 3.09 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.86 Total: 2.01 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.54 Total: -60.35 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.14 -9.89 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.536 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds