Wall clock time and date at job start Wed Apr 1 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34673 * 125.98620 * 2 1 4 4 N 1.36880 * 106.81808 * 180.11919 * 3 2 1 5 5 C 1.46497 * 126.40082 * 179.84323 * 4 3 2 6 6 C 1.53005 * 109.47124 * 52.09498 * 5 4 3 7 7 C 1.53000 * 109.47136 * 292.09548 * 5 4 3 8 8 C 1.50704 * 109.47419 * 172.09113 * 5 4 3 9 9 O 1.21285 * 119.99868 * 121.05988 * 8 5 4 10 10 N 1.34772 * 119.99824 * 300.79664 * 8 5 4 11 11 C 1.47216 * 121.36466 * 4.05621 * 10 8 5 12 12 C 1.52755 * 107.76142 * 238.09810 * 11 10 8 13 13 C 1.53157 * 110.84150 * 302.11188 * 12 11 10 14 14 H 1.08998 * 111.80434 * 289.11402 * 13 12 11 15 15 C 1.53937 * 110.88231 * 54.70176 * 13 12 11 16 16 H 1.09003 * 109.51280 * 188.81169 * 15 13 12 17 17 C 1.54198 * 102.21130 * 72.76285 * 15 13 12 18 18 C 1.54715 * 102.06418 * 37.57348 * 17 15 13 19 19 N 1.48569 * 107.41186 * 338.47838 * 18 17 15 20 20 C 1.36933 * 126.60772 * 176.14266 * 19 18 17 21 21 H 1.08005 * 119.99657 * 180.15608 * 20 19 18 22 22 C 1.38813 * 120.00578 * 0.15960 * 20 19 18 23 23 N 1.31620 * 119.99299 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00260 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46978 * 59.99882 * 24 22 20 26 26 H 1.48500 * 109.46892 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46890 * 299.99893 * 24 22 20 28 28 C 1.46717 * 121.35964 * 183.78147 * 10 8 5 29 29 C 1.35047 * 107.20334 * 359.58463 * 4 3 2 30 30 N 1.30497 * 108.69906 * 0.25658 * 29 4 3 31 31 H 1.08998 * 109.47037 * 270.32767 * 1 2 3 32 32 H 1.09000 * 109.47722 * 30.32886 * 1 2 3 33 33 H 1.09004 * 109.46972 * 150.32792 * 1 2 3 34 34 H 1.08007 * 126.59404 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47163 * 186.27206 * 6 5 4 36 36 H 1.09006 * 109.46558 * 306.27055 * 6 5 4 37 37 H 1.08997 * 109.47431 * 66.26571 * 6 5 4 38 38 H 1.08999 * 109.47061 * 295.54544 * 7 5 4 39 39 H 1.08996 * 109.47065 * 55.54540 * 7 5 4 40 40 H 1.09003 * 109.46933 * 175.54881 * 7 5 4 41 41 H 1.08999 * 109.80110 * 357.66026 * 11 10 8 42 42 H 1.08999 * 109.80011 * 118.52698 * 11 10 8 43 43 H 1.08993 * 109.20536 * 62.46651 * 12 11 10 44 44 H 1.09000 * 109.20398 * 181.77004 * 12 11 10 45 45 H 1.09007 * 110.91204 * 155.75998 * 17 15 13 46 46 H 1.09002 * 110.91394 * 279.34292 * 17 15 13 47 47 H 1.08997 * 109.89332 * 97.88488 * 18 17 15 48 48 H 1.09007 * 109.88790 * 219.06840 * 18 17 15 49 49 H 0.97006 * 119.99579 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.14551 * 248.21673 * 28 10 8 51 51 H 1.09000 * 109.14196 * 7.36500 * 28 10 8 52 52 H 1.08001 * 125.65122 * 180.30295 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6403 -0.0027 5 6 4.7995 1.4686 -0.0070 6 6 4.7220 2.4895 1.1301 7 6 4.9099 2.2027 -1.3448 8 6 6.0102 0.5922 0.1866 9 8 6.8851 0.5726 -0.6531 10 7 6.1230 -0.1658 1.2952 11 6 5.0429 -0.2287 2.2936 12 6 5.6211 0.2200 3.6344 13 6 6.8071 -0.6608 4.0386 14 1 6.4882 -1.6636 4.3229 15 6 7.8718 -0.6913 2.9272 16 1 8.6263 -1.4407 3.1663 17 6 8.4928 0.7162 3.0318 18 6 8.4998 0.9538 4.5606 19 7 7.4858 0.0459 5.1562 20 6 7.2200 -0.1188 6.4894 21 1 6.4565 -0.8141 6.8058 22 6 7.9316 0.6079 7.4341 23 7 8.8616 1.4556 7.0483 24 14 7.5684 0.3836 9.2527 25 1 7.8070 -1.0316 9.6342 26 1 8.4577 1.2680 10.0477 27 1 6.1512 0.7366 9.5216 28 6 7.3248 -0.9668 1.5535 29 6 3.5450 -0.7094 0.0051 30 7 2.2953 -1.0851 0.0067 31 1 -0.3633 0.0059 1.0276 32 1 -0.3634 0.8870 -0.5189 33 1 -0.3633 -0.8929 -0.5088 34 1 1.9750 2.1202 -0.0004 35 1 5.5653 3.1765 1.0596 36 1 3.7899 3.0492 1.0528 37 1 4.7556 1.9701 2.0877 38 1 5.0446 1.4773 -2.1472 39 1 3.9993 2.7750 -1.5215 40 1 5.7647 2.8786 -1.3189 41 1 4.2303 0.4362 2.0009 42 1 4.6736 -1.2510 2.3742 43 1 5.9542 1.2546 3.5531 44 1 4.8474 0.1524 4.3992 45 1 9.5069 0.7247 2.6321 46 1 7.8709 1.4545 2.5255 47 1 9.4848 0.7246 4.9670 48 1 8.2395 1.9902 4.7759 49 1 9.3586 1.9637 7.7084 50 1 7.0723 -2.0244 1.4788 51 1 8.0814 -0.7271 0.8064 52 1 4.4005 -1.3685 0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:52 Heat of formation + Delta-G solvation = 60.355500 kcal Electronic energy + Delta-G solvation = -33140.568988 eV Core-core repulsion = 29142.058081 eV Total energy + Delta-G solvation = -3998.510907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.59647 -41.60707 -39.91498 -37.09497 -36.73686 -34.44050 -33.02091 -32.73621 -31.52613 -31.19706 -30.06026 -28.46006 -27.83791 -26.93672 -25.64096 -24.11936 -23.85917 -22.77789 -21.94246 -21.10329 -20.63689 -19.38539 -19.13850 -18.74910 -17.54705 -16.92443 -16.71325 -16.69114 -16.14009 -15.84445 -15.73731 -15.45294 -15.17929 -14.84302 -14.57840 -14.41840 -14.35904 -14.20289 -13.89780 -13.74992 -13.48745 -13.42979 -13.33567 -13.23957 -13.22298 -13.06309 -12.88645 -12.80933 -12.71850 -12.67429 -12.44644 -12.29092 -12.07641 -11.68079 -11.52077 -11.39000 -11.22434 -11.01263 -10.88056 -10.72282 -10.52652 -9.82002 -9.23733 -8.88226 -7.83653 -5.17272 0.97896 1.08105 1.45828 1.47943 1.54052 1.69082 1.92267 2.14959 2.49331 2.92787 3.35056 3.46304 3.52896 3.62102 3.67658 3.74507 3.82871 3.85818 4.00612 4.09991 4.20509 4.33465 4.35794 4.43586 4.45777 4.49348 4.55458 4.59230 4.62953 4.66212 4.67562 4.73866 4.76457 4.85467 4.95840 4.98032 5.01716 5.04282 5.06032 5.10303 5.20088 5.26720 5.32678 5.36709 5.46783 5.56182 5.64003 5.75983 5.88136 6.13124 6.17111 6.19052 6.82617 7.08432 7.12920 7.76145 8.45387 9.27545 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.003395 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.060930 B = 8245.857207 C = 9170.410193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.026 4.026 3 C -0.039 4.039 4 N -0.446 5.446 5 C 0.153 3.847 6 C -0.171 4.171 7 C -0.137 4.137 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.128 4.128 13 C 0.161 3.839 14 H 0.065 0.935 15 C -0.099 4.099 16 H 0.083 0.917 17 C -0.119 4.119 18 C 0.189 3.811 19 N -0.620 5.620 20 C -0.231 4.231 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.953 5.953 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.299 1.299 27 H -0.278 1.278 28 C 0.131 3.869 29 C 0.175 3.825 30 N -0.516 5.516 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.205 0.795 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.012 0.988 48 H -0.002 1.002 49 H 0.244 0.756 50 H 0.091 0.909 51 H 0.090 0.910 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 0.976 -17.211 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.154 4.154 3 C -0.171 4.171 4 N -0.131 5.131 5 C 0.066 3.934 6 C -0.229 4.229 7 C -0.195 4.195 8 C 0.303 3.697 9 O -0.429 6.429 10 N -0.324 5.324 11 C -0.015 4.015 12 C -0.169 4.169 13 C 0.054 3.946 14 H 0.083 0.917 15 C -0.119 4.119 16 H 0.101 0.899 17 C -0.157 4.157 18 C 0.064 3.936 19 N -0.345 5.345 20 C -0.360 4.360 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.603 5.603 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.204 1.204 28 C 0.008 3.992 29 C -0.107 4.107 30 N -0.236 5.236 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.222 0.778 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.030 0.970 48 H 0.016 0.984 49 H 0.053 0.947 50 H 0.109 0.891 51 H 0.108 0.892 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.731 0.318 -17.423 21.581 hybrid contribution 0.884 0.826 1.602 2.007 sum -11.847 1.144 -15.822 19.798 Atomic orbital electron populations 1.20065 0.86129 1.03209 1.02657 1.21240 0.97729 0.88411 1.08004 1.22828 0.81658 1.01660 1.10970 1.45703 1.06292 1.06943 1.54174 1.21093 0.80445 0.90920 1.00975 1.22551 1.05920 0.98230 0.96170 1.21990 1.04636 1.00413 0.92416 1.20432 0.88131 0.79771 0.81317 1.90722 1.42948 1.65857 1.43407 1.48189 1.18567 1.44742 1.20859 1.22212 0.89047 1.03214 0.87039 1.22297 0.98676 1.00172 0.95748 1.21389 0.91500 0.94675 0.86987 0.91714 1.21679 0.98212 0.97690 0.94347 0.89898 1.22573 1.00359 0.96827 0.95940 1.21108 0.91567 0.91849 0.89085 1.45471 1.41260 1.46732 1.01011 1.19377 1.15660 1.19064 0.81861 0.89874 1.25560 0.99053 0.99473 1.01892 1.70159 1.27143 1.30190 1.32770 0.85237 0.77193 0.77217 0.80214 1.20435 1.22510 1.20375 1.20934 0.87065 0.95611 0.95566 1.24921 0.96918 0.82594 1.06226 1.70198 1.00895 1.31794 1.20674 0.91065 0.89199 0.92107 0.77793 0.89502 0.87743 0.91015 0.92407 0.88652 0.89655 0.88289 0.89700 0.93128 0.92164 0.91027 0.92293 0.96954 0.98385 0.94680 0.89083 0.89166 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.42 71.24 0.74 -0.18 16 2 C -0.03 -0.53 7.09 41.39 0.29 -0.23 16 3 C -0.04 -0.65 10.39 83.09 0.86 0.21 16 4 N -0.45 -8.49 1.48 -488.69 -0.73 -9.22 16 5 C 0.15 2.87 0.79 2.86 0.00 2.87 16 6 C -0.17 -2.89 8.09 71.98 0.58 -2.30 16 7 C -0.14 -2.22 7.99 71.98 0.58 -1.64 16 8 C 0.52 12.67 5.57 87.66 0.49 13.16 16 9 O -0.55 -16.58 15.42 -3.04 -0.05 -16.63 16 10 N -0.59 -14.17 2.15 -824.78 -1.77 -15.95 16 11 C 0.11 2.55 3.47 86.16 0.30 2.85 16 12 C -0.13 -4.03 4.83 30.57 0.15 -3.88 16 13 C 0.16 5.80 3.60 44.95 0.16 5.97 16 14 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 15 C -0.10 -3.09 2.89 -10.91 -0.03 -3.12 16 16 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 17 C -0.12 -4.25 5.84 31.58 0.18 -4.06 16 18 C 0.19 9.08 5.14 86.57 0.45 9.52 16 19 N -0.62 -29.94 2.93 -662.27 -1.94 -31.88 16 20 C -0.23 -12.41 10.31 84.03 0.87 -11.55 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 23 N -0.95 -56.95 10.46 21.65 0.23 -56.72 16 24 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 C 0.13 3.24 5.78 85.50 0.49 3.73 16 29 C 0.18 4.03 9.12 180.26 1.64 5.67 16 30 N -0.52 -13.20 11.25 -188.31 -2.12 -15.32 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.21 1.89 7.83 -2.91 -0.02 1.87 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.21 7.44 -2.38 -0.02 1.19 16 37 H 0.07 1.49 3.93 -2.39 -0.01 1.48 16 38 H 0.06 1.12 7.99 -2.39 -0.02 1.11 16 39 H 0.09 1.07 8.00 -2.39 -0.02 1.05 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 2.19 3.47 -2.39 -0.01 2.18 16 42 H 0.08 1.92 7.92 -2.39 -0.02 1.90 16 43 H 0.05 1.78 6.07 -2.39 -0.01 1.76 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.06 2.04 7.37 -2.39 -0.02 2.02 16 47 H 0.01 0.67 7.30 -2.39 -0.02 0.65 16 48 H 0.00 -0.12 7.72 -2.38 -0.02 -0.13 16 49 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 50 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.09 2.34 7.06 -2.39 -0.02 2.32 16 52 H 0.20 4.39 6.76 -2.91 -0.02 4.37 16 Total: -1.00 -70.23 387.83 4.79 -65.44 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.91 Total: 19.29 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 8.23 Total: 13.73 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.33 Total: -129.09 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.05 Total: -16.63 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.23 4.79 -65.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.799 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds