Wall clock time and date at job start Wed Apr 1 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34676 * 125.98585 * 2 1 4 4 N 1.36883 * 106.81233 * 180.11452 * 3 2 1 5 5 C 1.46504 * 126.39205 * 179.83867 * 4 3 2 6 6 C 1.53004 * 109.47211 * 67.74508 * 5 4 3 7 7 C 1.52997 * 109.47320 * 307.74093 * 5 4 3 8 8 C 1.50704 * 109.47115 * 187.74141 * 5 4 3 9 9 O 1.21285 * 120.00141 * 244.06743 * 8 5 4 10 10 N 1.34784 * 119.99706 * 64.05915 * 8 5 4 11 11 C 1.46589 * 119.68210 * 354.70020 * 10 8 5 12 12 C 1.53954 * 110.57207 * 227.79867 * 11 10 8 13 13 C 1.51804 * 107.28421 * 308.73182 * 12 11 10 14 14 H 1.09003 * 109.29242 * 306.56868 * 13 12 11 15 15 C 1.55678 * 107.48716 * 65.11877 * 13 12 11 16 16 H 1.09003 * 112.48471 * 50.67987 * 15 13 12 17 17 C 1.53742 * 100.10270 * 168.92618 * 15 13 12 18 18 C 1.55292 * 101.83911 * 320.74058 * 17 15 13 19 19 N 1.45465 * 117.17076 * 181.63610 * 13 12 11 20 20 C 1.36931 * 126.40606 * 31.14126 * 19 13 12 21 21 H 1.08005 * 120.00134 * 358.77249 * 20 19 13 22 22 C 1.38812 * 120.00137 * 178.76443 * 20 19 13 23 23 N 1.31618 * 119.99656 * 152.37968 * 22 20 19 24 24 Si 1.86795 * 120.00043 * 332.38589 * 22 20 19 25 25 H 1.48504 * 109.47002 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47220 * 59.99599 * 24 22 20 27 27 H 1.48496 * 109.47454 * 299.99774 * 24 22 20 28 28 C 1.47722 * 119.67650 * 174.67639 * 10 8 5 29 29 C 1.35038 * 107.20836 * 359.57817 * 4 3 2 30 30 N 1.30498 * 108.69879 * 0.26289 * 29 4 3 31 31 H 1.08995 * 109.47303 * 270.33235 * 1 2 3 32 32 H 1.08996 * 109.47128 * 30.34116 * 1 2 3 33 33 H 1.09004 * 109.46833 * 150.33647 * 1 2 3 34 34 H 1.07991 * 126.59489 * 359.97145 * 3 2 1 35 35 H 1.08995 * 109.47191 * 184.82405 * 6 5 4 36 36 H 1.08994 * 109.46683 * 304.82701 * 6 5 4 37 37 H 1.08999 * 109.47058 * 64.82802 * 6 5 4 38 38 H 1.08997 * 109.47398 * 305.93692 * 7 5 4 39 39 H 1.08998 * 109.47098 * 65.94102 * 7 5 4 40 40 H 1.08998 * 109.46846 * 185.93349 * 7 5 4 41 41 H 1.09000 * 109.25974 * 348.08418 * 11 10 8 42 42 H 1.09004 * 109.25382 * 107.51605 * 11 10 8 43 43 H 1.09001 * 109.88370 * 68.41174 * 12 11 10 44 44 H 1.09007 * 109.87942 * 189.41632 * 12 11 10 45 45 H 1.09004 * 110.95652 * 202.60593 * 17 15 13 46 46 H 1.08995 * 110.95730 * 78.87826 * 17 15 13 47 47 H 1.08994 * 109.92161 * 263.12748 * 18 17 15 48 48 H 1.09010 * 110.08387 * 141.91924 * 18 17 15 49 49 H 0.96996 * 120.00553 * 354.98752 * 23 22 20 50 50 H 1.08997 * 110.07164 * 8.75185 * 28 10 8 51 51 H 1.09000 * 110.15275 * 247.22638 * 28 10 8 52 52 H 1.08001 * 125.65273 * 180.22462 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0026 5 6 4.7995 1.4686 -0.0069 6 6 4.9146 2.2096 1.3268 7 6 4.7180 2.4835 -1.1489 8 6 6.0095 0.5912 -0.2001 9 8 6.8421 0.5046 0.6775 10 7 6.1661 -0.0974 -1.3481 11 6 5.1016 -0.0807 -2.3557 12 6 4.7954 -1.5086 -2.8430 13 6 6.1159 -2.1411 -3.2440 14 1 6.6248 -1.4915 -3.9561 15 6 6.9815 -2.2727 -1.9568 16 1 6.4434 -2.7537 -1.1399 17 6 8.1141 -3.1689 -2.4839 18 6 7.3394 -4.1571 -3.3976 19 7 6.0698 -3.4940 -3.7764 20 6 5.0468 -4.0491 -4.4978 21 1 4.1564 -3.4733 -4.7033 22 6 5.1541 -5.3518 -4.9651 23 7 4.0701 -6.0731 -5.1577 24 14 6.8367 -6.0810 -5.3203 25 1 6.6794 -7.4761 -5.8044 26 1 7.6501 -6.0774 -4.0779 27 1 7.5183 -5.2696 -6.3605 28 6 7.4093 -0.8613 -1.5789 29 6 3.5449 -0.7094 0.0054 30 7 2.2952 -1.0851 0.0069 31 1 -0.3634 0.0060 1.0276 32 1 -0.3633 0.8869 -0.5191 33 1 -0.3633 -0.8930 -0.5086 34 1 1.9750 2.1201 -0.0004 35 1 5.7652 2.8903 1.2920 36 1 4.0019 2.7775 1.5068 37 1 5.0589 1.4888 2.1316 38 1 4.5305 1.9609 -2.0868 39 1 3.9061 3.1844 -0.9548 40 1 5.6595 3.0284 -1.2185 41 1 4.2007 0.3513 -1.9198 42 1 5.4178 0.5282 -3.2027 43 1 4.3334 -2.0832 -2.0403 44 1 4.1276 -1.4713 -3.7038 45 1 8.6056 -3.6971 -1.6668 46 1 8.8345 -2.5883 -3.0600 47 1 7.1296 -5.0784 -2.8544 48 1 7.9241 -4.3777 -4.2908 49 1 3.2022 -5.7214 -4.9051 50 1 8.0093 -0.8832 -0.6692 51 1 7.9799 -0.4131 -2.3923 52 1 4.4004 -1.3686 0.0092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:57 Heat of formation + Delta-G solvation = 91.897652 kcal Electronic energy + Delta-G solvation = -33256.766904 eV Core-core repulsion = 29259.623767 eV Total energy + Delta-G solvation = -3997.143137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.74621 -40.53541 -38.82781 -36.23244 -35.75936 -32.85285 -32.01559 -31.77706 -30.69130 -30.34282 -28.66138 -27.74722 -27.02014 -25.46364 -23.78835 -22.95737 -22.73420 -21.65229 -20.60341 -20.24427 -19.67597 -19.13321 -18.01879 -17.07950 -16.62666 -15.92698 -15.60630 -15.34767 -15.12707 -14.82867 -14.65172 -14.23817 -14.08498 -13.87871 -13.72062 -13.35390 -13.30274 -13.14473 -12.95404 -12.81385 -12.72591 -12.61206 -12.54438 -12.44497 -12.23369 -12.06484 -11.90198 -11.72016 -11.40378 -11.19646 -10.91292 -10.77570 -10.53684 -10.14521 -10.05850 -9.91929 -9.80263 -9.60280 -9.51559 -8.95106 -8.79785 -8.43118 -8.38460 -7.09332 -6.31185 -3.13252 1.83526 1.92170 2.59293 2.78934 3.09859 3.44501 3.54915 3.73201 3.76034 4.22087 4.31416 4.54865 4.63363 4.66422 4.68874 4.81712 4.94248 5.01387 5.02428 5.07774 5.16534 5.21103 5.23947 5.27800 5.30528 5.32165 5.37849 5.47690 5.56270 5.58425 5.65725 5.70334 5.73709 5.78889 5.81874 5.93066 5.96082 5.97193 6.03365 6.09290 6.14630 6.24135 6.42241 6.50752 6.59958 6.69076 6.78862 6.88178 7.02120 7.08861 7.68524 7.74459 8.06335 8.35051 9.04267 9.62961 10.27707 11.18056 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003978 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.503841 B = 7036.897338 C = 8553.794294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.002 3.998 3 C -0.057 4.057 4 N -0.453 5.453 5 C 0.145 3.855 6 C -0.141 4.141 7 C -0.171 4.171 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.596 5.596 11 C 0.092 3.908 12 C -0.125 4.125 13 C 0.172 3.828 14 H 0.022 0.978 15 C -0.126 4.126 16 H 0.084 0.916 17 C -0.121 4.121 18 C 0.119 3.881 19 N -0.600 5.600 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.915 5.915 24 Si 1.033 2.967 25 H -0.300 1.300 26 H -0.270 1.270 27 H -0.298 1.298 28 C 0.124 3.876 29 C 0.196 3.804 30 N -0.479 5.479 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.172 0.828 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.263 0.737 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 20.524 10.712 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.127 4.127 3 C -0.188 4.188 4 N -0.139 5.139 5 C 0.057 3.943 6 C -0.199 4.199 7 C -0.228 4.228 8 C 0.298 3.702 9 O -0.400 6.400 10 N -0.329 5.329 11 C -0.031 4.031 12 C -0.164 4.164 13 C 0.063 3.937 14 H 0.040 0.960 15 C -0.147 4.147 16 H 0.103 0.897 17 C -0.159 4.159 18 C -0.005 4.005 19 N -0.326 5.326 20 C -0.455 4.455 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.554 5.554 24 Si 0.864 3.136 25 H -0.228 1.228 26 H -0.196 1.196 27 H -0.226 1.226 28 C 0.003 3.997 29 C -0.085 4.085 30 N -0.197 5.197 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.189 0.811 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.112 0.888 51 H 0.092 0.908 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.187 18.344 10.491 21.245 hybrid contribution -0.390 2.213 0.289 2.265 sum 1.798 20.557 10.780 23.282 Atomic orbital electron populations 1.20016 0.87724 1.02721 1.01987 1.20768 0.96541 0.88438 1.06908 1.22276 0.82501 1.00350 1.13657 1.45686 1.05709 1.07348 1.55180 1.21085 0.81987 0.91407 0.99794 1.21987 1.03122 1.00654 0.94106 1.22522 1.04331 0.98493 0.97496 1.20159 0.87304 0.80446 0.82313 1.90730 1.44439 1.63589 1.41208 1.48366 1.18958 1.47854 1.17674 1.22376 0.90058 0.99441 0.91198 1.21897 0.99313 0.93194 1.01949 1.20691 0.93219 0.88315 0.91466 0.96045 1.22733 0.98730 0.93765 0.99453 0.89725 1.22445 0.96652 0.97687 0.99123 1.22411 0.87170 0.95303 0.95622 1.44548 1.16887 1.08843 1.62314 1.19989 0.94951 0.98042 1.32543 0.90203 1.25612 1.04554 0.92104 0.99186 1.70901 0.99183 1.35706 1.49649 0.84558 0.76601 0.75391 0.77000 1.22770 1.19640 1.22644 1.21706 0.84996 0.90716 1.02301 1.25006 0.97292 0.81575 1.04671 1.70293 1.00075 1.30112 1.19198 0.91609 0.91508 0.91007 0.81067 0.90031 0.91058 0.90745 0.89698 0.90337 0.89909 0.88950 0.91419 0.90611 0.90461 0.91198 0.91451 0.93193 0.95338 0.92682 0.88804 0.90785 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.00 0.38 -0.29 16 2 C 0.00 0.03 7.09 -82.85 -0.59 -0.56 16 3 C -0.06 -0.59 10.56 -16.56 -0.17 -0.77 16 4 N -0.45 -5.15 1.43 -105.82 -0.15 -5.30 16 5 C 0.15 1.43 0.79 -132.97 -0.10 1.33 16 6 C -0.14 -1.22 8.05 37.16 0.30 -0.92 16 7 C -0.17 -1.26 7.87 37.16 0.29 -0.97 16 8 C 0.51 6.42 5.39 -10.98 -0.06 6.36 16 9 O -0.52 -7.90 15.25 5.55 0.08 -7.82 16 10 N -0.60 -7.47 2.58 -172.48 -0.45 -7.91 16 11 C 0.09 1.16 3.50 -3.50 -0.01 1.15 16 12 C -0.12 -2.10 5.32 -26.84 -0.14 -2.25 16 13 C 0.17 3.19 2.59 -67.67 -0.18 3.02 16 14 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 15 C -0.13 -1.99 2.86 -89.19 -0.26 -2.25 16 16 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 17 C -0.12 -1.91 6.53 -25.13 -0.16 -2.08 16 18 C 0.12 2.52 4.52 -1.91 -0.01 2.51 16 19 N -0.60 -14.11 3.30 -162.73 -0.54 -14.65 16 20 C -0.33 -9.14 10.06 -15.06 -0.15 -9.30 16 21 H 0.08 2.34 7.44 -52.48 -0.39 1.95 16 22 C -0.01 -0.40 5.46 -17.43 -0.10 -0.49 16 23 N -0.91 -28.61 13.70 55.49 0.76 -27.85 16 24 Si 1.03 25.79 25.19 -169.99 -4.28 21.50 16 25 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 26 H -0.27 -6.04 4.64 56.52 0.26 -5.78 16 27 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.12 1.61 5.97 -3.76 -0.02 1.59 16 29 C 0.20 2.84 8.44 -90.38 -0.76 2.08 16 30 N -0.48 -7.68 11.25 -10.88 -0.12 -7.80 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.49 7.99 -51.93 -0.41 0.08 16 37 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 38 H 0.08 0.69 4.76 -51.93 -0.25 0.44 16 39 H 0.08 0.44 8.02 -51.93 -0.42 0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.12 3.17 -51.93 -0.16 0.95 16 42 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 43 H 0.08 1.42 6.60 -51.93 -0.34 1.08 16 44 H 0.08 1.43 7.62 -51.92 -0.40 1.04 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 47 H 0.05 1.13 6.50 -51.93 -0.34 0.79 16 48 H 0.03 0.63 4.95 -51.92 -0.26 0.37 16 49 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 50 H 0.09 1.23 6.98 -51.93 -0.36 0.87 16 51 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 52 H 0.20 3.00 6.56 -52.49 -0.34 2.66 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -33.70 381.21 -9.12 -42.81 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.42 Total: 3.11 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.75 Total: -1.84 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.50 Total: -63.51 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.28 Total: 21.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.70 -9.12 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.710 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds