Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34676 * 125.98585 * 2 1 4 4 N 1.36883 * 106.81233 * 180.11452 * 3 2 1 5 5 C 1.46504 * 126.39205 * 179.83867 * 4 3 2 6 6 C 1.53004 * 109.47211 * 67.74508 * 5 4 3 7 7 C 1.52997 * 109.47320 * 307.74093 * 5 4 3 8 8 C 1.50704 * 109.47115 * 187.74141 * 5 4 3 9 9 O 1.21285 * 120.00141 * 244.06743 * 8 5 4 10 10 N 1.34784 * 119.99706 * 64.05915 * 8 5 4 11 11 C 1.46589 * 119.68210 * 354.70020 * 10 8 5 12 12 C 1.53954 * 110.57207 * 227.79867 * 11 10 8 13 13 C 1.51804 * 107.28421 * 308.73182 * 12 11 10 14 14 H 1.09003 * 109.29242 * 306.56868 * 13 12 11 15 15 C 1.55678 * 107.48716 * 65.11877 * 13 12 11 16 16 H 1.09003 * 112.48471 * 50.67987 * 15 13 12 17 17 C 1.53742 * 100.10270 * 168.92618 * 15 13 12 18 18 C 1.55292 * 101.83911 * 320.74058 * 17 15 13 19 19 N 1.45465 * 117.17076 * 181.63610 * 13 12 11 20 20 C 1.36931 * 126.40606 * 31.14126 * 19 13 12 21 21 H 1.08005 * 120.00134 * 358.77249 * 20 19 13 22 22 C 1.38812 * 120.00137 * 178.76443 * 20 19 13 23 23 N 1.31618 * 119.99656 * 152.37968 * 22 20 19 24 24 Si 1.86795 * 120.00043 * 332.38589 * 22 20 19 25 25 H 1.48504 * 109.47002 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47220 * 59.99599 * 24 22 20 27 27 H 1.48496 * 109.47454 * 299.99774 * 24 22 20 28 28 C 1.47722 * 119.67650 * 174.67639 * 10 8 5 29 29 C 1.35038 * 107.20836 * 359.57817 * 4 3 2 30 30 N 1.30498 * 108.69879 * 0.26289 * 29 4 3 31 31 H 1.08995 * 109.47303 * 270.33235 * 1 2 3 32 32 H 1.08996 * 109.47128 * 30.34116 * 1 2 3 33 33 H 1.09004 * 109.46833 * 150.33647 * 1 2 3 34 34 H 1.07991 * 126.59489 * 359.97145 * 3 2 1 35 35 H 1.08995 * 109.47191 * 184.82405 * 6 5 4 36 36 H 1.08994 * 109.46683 * 304.82701 * 6 5 4 37 37 H 1.08999 * 109.47058 * 64.82802 * 6 5 4 38 38 H 1.08997 * 109.47398 * 305.93692 * 7 5 4 39 39 H 1.08998 * 109.47098 * 65.94102 * 7 5 4 40 40 H 1.08998 * 109.46846 * 185.93349 * 7 5 4 41 41 H 1.09000 * 109.25974 * 348.08418 * 11 10 8 42 42 H 1.09004 * 109.25382 * 107.51605 * 11 10 8 43 43 H 1.09001 * 109.88370 * 68.41174 * 12 11 10 44 44 H 1.09007 * 109.87942 * 189.41632 * 12 11 10 45 45 H 1.09004 * 110.95652 * 202.60593 * 17 15 13 46 46 H 1.08995 * 110.95730 * 78.87826 * 17 15 13 47 47 H 1.08994 * 109.92161 * 263.12748 * 18 17 15 48 48 H 1.09010 * 110.08387 * 141.91924 * 18 17 15 49 49 H 0.96996 * 120.00553 * 354.98752 * 23 22 20 50 50 H 1.08997 * 110.07164 * 8.75185 * 28 10 8 51 51 H 1.09000 * 110.15275 * 247.22638 * 28 10 8 52 52 H 1.08001 * 125.65273 * 180.22462 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0026 5 6 4.7995 1.4686 -0.0069 6 6 4.9146 2.2096 1.3268 7 6 4.7180 2.4835 -1.1489 8 6 6.0095 0.5912 -0.2001 9 8 6.8421 0.5046 0.6775 10 7 6.1661 -0.0974 -1.3481 11 6 5.1016 -0.0807 -2.3557 12 6 4.7954 -1.5086 -2.8430 13 6 6.1159 -2.1411 -3.2440 14 1 6.6248 -1.4915 -3.9561 15 6 6.9815 -2.2727 -1.9568 16 1 6.4434 -2.7537 -1.1399 17 6 8.1141 -3.1689 -2.4839 18 6 7.3394 -4.1571 -3.3976 19 7 6.0698 -3.4940 -3.7764 20 6 5.0468 -4.0491 -4.4978 21 1 4.1564 -3.4733 -4.7033 22 6 5.1541 -5.3518 -4.9651 23 7 4.0701 -6.0731 -5.1577 24 14 6.8367 -6.0810 -5.3203 25 1 6.6794 -7.4761 -5.8044 26 1 7.6501 -6.0774 -4.0779 27 1 7.5183 -5.2696 -6.3605 28 6 7.4093 -0.8613 -1.5789 29 6 3.5449 -0.7094 0.0054 30 7 2.2952 -1.0851 0.0069 31 1 -0.3634 0.0060 1.0276 32 1 -0.3633 0.8869 -0.5191 33 1 -0.3633 -0.8930 -0.5086 34 1 1.9750 2.1201 -0.0004 35 1 5.7652 2.8903 1.2920 36 1 4.0019 2.7775 1.5068 37 1 5.0589 1.4888 2.1316 38 1 4.5305 1.9609 -2.0868 39 1 3.9061 3.1844 -0.9548 40 1 5.6595 3.0284 -1.2185 41 1 4.2007 0.3513 -1.9198 42 1 5.4178 0.5282 -3.2027 43 1 4.3334 -2.0832 -2.0403 44 1 4.1276 -1.4713 -3.7038 45 1 8.6056 -3.6971 -1.6668 46 1 8.8345 -2.5883 -3.0600 47 1 7.1296 -5.0784 -2.8544 48 1 7.9241 -4.3777 -4.2908 49 1 3.2022 -5.7214 -4.9051 50 1 8.0093 -0.8832 -0.6692 51 1 7.9799 -0.4131 -2.3923 52 1 4.4004 -1.3686 0.0092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = 70.246547 kcal Electronic energy + Delta-G solvation = -33257.705766 eV Core-core repulsion = 29259.623767 eV Total energy + Delta-G solvation = -3998.081999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.69687 -41.63679 -40.15990 -37.27484 -36.94980 -34.75017 -33.22000 -32.84100 -32.08064 -31.53305 -30.00723 -28.45065 -27.90726 -26.85320 -25.36292 -24.24420 -23.81040 -22.75295 -22.22044 -21.19363 -21.01284 -20.17964 -19.41424 -18.73294 -17.61361 -17.08259 -16.83146 -16.70020 -16.42588 -16.00265 -15.76776 -15.55112 -15.30121 -14.96733 -14.90656 -14.78147 -14.51771 -14.29111 -14.11757 -13.97583 -13.69646 -13.49769 -13.41382 -13.33226 -13.23334 -13.13894 -12.96493 -12.87984 -12.75586 -12.60440 -12.28100 -12.25831 -12.13908 -11.69607 -11.55472 -11.31919 -11.07185 -10.90573 -10.80823 -10.60356 -10.48229 -9.92721 -9.29611 -9.12018 -8.63055 -5.35217 0.88937 0.99641 1.43974 1.51976 1.60791 1.72062 1.88401 2.08669 2.60990 2.84333 2.99851 3.24592 3.51359 3.57077 3.59193 3.60880 3.71039 3.77663 3.84773 3.95340 3.99249 4.21425 4.29258 4.31581 4.39341 4.40822 4.50790 4.53177 4.56728 4.60858 4.63489 4.65891 4.68880 4.71607 4.82227 4.86330 4.90163 4.93634 4.98544 5.00314 5.06495 5.09800 5.13769 5.21659 5.29257 5.31349 5.41876 5.63187 5.82167 6.04425 6.07965 6.11214 6.74834 6.83306 7.09227 7.54082 8.17621 8.88020 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003978 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.503841 B = 7036.897338 C = 8553.794294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.032 4.032 3 C -0.028 4.028 4 N -0.444 5.444 5 C 0.145 3.855 6 C -0.137 4.137 7 C -0.168 4.168 8 C 0.512 3.488 9 O -0.550 6.550 10 N -0.596 5.596 11 C 0.110 3.890 12 C -0.117 4.117 13 C 0.159 3.841 14 H 0.036 0.964 15 C -0.112 4.112 16 H 0.062 0.938 17 C -0.107 4.107 18 C 0.106 3.894 19 N -0.623 5.623 20 C -0.308 4.308 21 H 0.048 0.952 22 C -0.077 4.077 23 N -0.956 5.956 24 Si 1.073 2.927 25 H -0.316 1.316 26 H -0.228 1.228 27 H -0.286 1.286 28 C 0.131 3.869 29 C 0.175 3.825 30 N -0.525 5.525 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.218 0.782 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.030 0.970 48 H 0.031 0.969 49 H 0.246 0.754 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 24.746 11.639 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 C -0.160 4.160 4 N -0.130 5.130 5 C 0.058 3.942 6 C -0.195 4.195 7 C -0.225 4.225 8 C 0.299 3.701 9 O -0.427 6.427 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.157 4.157 13 C 0.052 3.948 14 H 0.053 0.947 15 C -0.133 4.133 16 H 0.080 0.920 17 C -0.145 4.145 18 C -0.018 4.018 19 N -0.349 5.349 20 C -0.436 4.436 21 H 0.066 0.934 22 C -0.270 4.270 23 N -0.600 5.600 24 Si 0.900 3.100 25 H -0.245 1.245 26 H -0.152 1.152 27 H -0.214 1.214 28 C 0.010 3.990 29 C -0.107 4.107 30 N -0.245 5.245 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.117 0.883 51 H 0.117 0.883 52 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.425 22.629 11.453 25.746 hybrid contribution -1.176 0.977 0.056 1.530 sum 3.250 23.606 11.509 26.463 Atomic orbital electron populations 1.20073 0.86230 1.03090 1.02700 1.21322 0.97840 0.88480 1.08387 1.22895 0.81296 1.01589 1.10229 1.45773 1.06783 1.06364 1.54058 1.21304 0.79963 0.90997 1.01935 1.22010 1.05008 1.00214 0.92260 1.22575 1.06372 0.98020 0.95573 1.20617 0.87827 0.80247 0.81443 1.90721 1.45715 1.64534 1.41730 1.48349 1.18706 1.47914 1.17849 1.22216 0.90760 0.96290 0.91990 1.21757 0.98042 0.95911 0.99950 1.20990 0.94705 0.86216 0.92878 0.94692 1.22569 0.97905 0.95772 0.97012 0.91958 1.22441 0.96349 0.96685 0.99003 1.22565 0.86616 0.96160 0.96499 1.44637 1.17061 1.11208 1.61962 1.19845 0.95011 0.97557 1.31227 0.93449 1.26877 1.06946 0.93252 0.99965 1.71020 0.99123 1.36784 1.53079 0.84098 0.73445 0.73774 0.78698 1.24502 1.15174 1.21377 1.21674 0.85273 0.88743 1.03332 1.24554 0.96415 0.82904 1.06826 1.70207 1.01352 1.32587 1.20349 0.90736 0.88573 0.93141 0.76512 0.88736 0.88523 0.93218 0.90444 0.87511 0.88409 0.88116 0.89056 0.93496 0.93084 0.88765 0.88413 0.95222 0.95125 0.94543 0.88323 0.88346 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.42 71.23 0.74 -0.47 16 2 C -0.03 -0.81 7.09 41.39 0.29 -0.51 16 3 C -0.03 -0.51 10.56 83.09 0.88 0.37 16 4 N -0.44 -9.27 1.43 -488.70 -0.70 -9.97 16 5 C 0.14 2.41 0.79 2.86 0.00 2.42 16 6 C -0.14 -1.91 8.05 71.98 0.58 -1.33 16 7 C -0.17 -1.68 7.87 71.98 0.57 -1.11 16 8 C 0.51 11.72 5.39 87.66 0.47 12.19 16 9 O -0.55 -15.57 15.25 -3.05 -0.05 -15.62 16 10 N -0.60 -13.70 2.58 -818.00 -2.11 -15.81 16 11 C 0.11 2.62 3.50 86.68 0.30 2.93 16 12 C -0.12 -4.09 5.32 30.52 0.16 -3.93 16 13 C 0.16 5.85 2.59 45.72 0.12 5.97 16 14 H 0.04 1.24 7.94 -2.39 -0.02 1.23 16 15 C -0.11 -3.36 2.86 -9.87 -0.03 -3.39 16 16 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.11 -3.05 6.53 31.63 0.21 -2.84 16 18 C 0.11 4.31 4.52 86.85 0.39 4.70 16 19 N -0.62 -29.62 3.30 -668.77 -2.21 -31.83 16 20 C -0.31 -17.92 10.06 84.03 0.85 -17.08 16 21 H 0.05 2.99 7.44 -2.91 -0.02 2.97 16 22 C -0.08 -4.65 5.46 84.86 0.46 -4.19 16 23 N -0.96 -63.24 13.70 21.65 0.30 -62.95 16 24 Si 1.07 52.95 25.19 68.60 1.73 54.68 16 25 H -0.32 -16.35 7.11 99.48 0.71 -15.64 16 26 H -0.23 -9.67 4.64 99.48 0.46 -9.21 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 C 0.13 3.03 5.97 85.90 0.51 3.54 16 29 C 0.17 5.18 8.44 180.26 1.52 6.70 16 30 N -0.53 -17.55 11.25 -188.32 -2.12 -19.67 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.22 1.79 8.06 -2.92 -0.02 1.77 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 0.86 7.99 -2.39 -0.02 0.84 16 37 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 38 H 0.08 0.93 4.76 -2.39 -0.01 0.91 16 39 H 0.11 0.52 8.02 -2.39 -0.02 0.50 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 2.27 3.17 -2.39 -0.01 2.27 16 42 H 0.09 1.81 7.83 -2.38 -0.02 1.79 16 43 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 44 H 0.05 2.01 7.62 -2.38 -0.02 1.99 16 45 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 47 H 0.03 1.32 6.50 -2.39 -0.02 1.31 16 48 H 0.03 1.26 4.95 -2.38 -0.01 1.25 16 49 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 50 H 0.10 2.28 6.98 -2.39 -0.02 2.26 16 51 H 0.10 1.87 8.08 -2.39 -0.02 1.85 16 52 H 0.18 5.80 6.56 -2.91 -0.02 5.78 16 Total: -1.00 -81.08 381.21 3.51 -77.57 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.63 Total: 19.65 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 8.03 Total: 3.94 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -6.84 Total: -140.23 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.05 Total: -15.62 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 1.73 Total: 54.68 kcal Total: -81.08 3.51 -77.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.818 kcal (2) G-P(sol) polarization free energy of solvation -81.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds