Wall clock time and date at job start Wed Apr 1 2020 03:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34255 * 126.29135 * 2 1 4 4 H 0.97007 * 125.75390 * 359.94019 * 3 2 1 5 5 N 1.39932 * 108.49591 * 179.97438 * 3 2 1 6 6 C 1.30449 * 108.89369 * 359.97438 * 5 3 2 7 7 C 1.50704 * 125.98862 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47186 * 299.97443 * 7 6 5 9 9 C 1.52998 * 109.47091 * 59.97589 * 7 6 5 10 10 C 1.38039 * 126.29302 * 179.68284 * 2 1 3 11 11 C 1.47429 * 126.41402 * 0.02562 * 10 2 1 12 12 O 1.21605 * 120.00499 * 90.02090 * 11 10 2 13 13 N 1.34773 * 120.00215 * 270.02026 * 11 10 2 14 14 C 1.46607 * 119.68344 * 359.72776 * 13 11 10 15 15 C 1.54786 * 110.71071 * 228.03119 * 14 13 11 16 16 C 1.51526 * 106.79981 * 308.79774 * 15 14 13 17 17 H 1.08998 * 109.27828 * 306.62282 * 16 15 14 18 18 C 1.55356 * 107.78708 * 65.18859 * 16 15 14 19 19 H 1.09006 * 111.50862 * 49.83300 * 18 16 15 20 20 C 1.53738 * 100.22374 * 168.51393 * 18 16 15 21 21 C 1.55290 * 101.83705 * 320.90254 * 20 18 16 22 22 N 1.45464 * 116.86365 * 181.93081 * 16 15 14 23 23 C 1.36937 * 126.40796 * 30.89064 * 22 16 15 24 24 H 1.07997 * 119.99953 * 359.97438 * 23 22 16 25 25 C 1.38817 * 120.00248 * 179.97438 * 23 22 16 26 26 N 1.31623 * 119.99818 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00232 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47088 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47037 * 120.00217 * 27 25 23 30 30 H 1.48505 * 109.47007 * 239.99926 * 27 25 23 31 31 C 1.47717 * 119.69062 * 179.97438 * 13 11 10 32 32 H 1.09002 * 109.47152 * 90.02639 * 1 2 3 33 33 H 1.09001 * 109.46980 * 330.02740 * 1 2 3 34 34 H 1.09004 * 109.47113 * 210.02721 * 1 2 3 35 35 H 1.08998 * 109.47154 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47224 * 59.99859 * 8 7 6 37 37 H 1.08997 * 109.47656 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47338 * 299.99849 * 8 7 6 39 39 H 1.09001 * 109.47575 * 59.99816 * 9 7 6 40 40 H 1.09000 * 109.47295 * 180.02562 * 9 7 6 41 41 H 1.08998 * 109.46853 * 299.99856 * 9 7 6 42 42 H 1.09002 * 109.25260 * 348.13037 * 14 13 11 43 43 H 1.08999 * 109.25479 * 107.56447 * 14 13 11 44 44 H 1.08999 * 109.86952 * 189.66672 * 15 14 13 45 45 H 1.09006 * 110.49517 * 68.27534 * 15 14 13 46 46 H 1.08999 * 110.95710 * 79.03572 * 20 18 16 47 47 H 1.09004 * 110.95745 * 202.77247 * 20 18 16 48 48 H 1.09002 * 109.92253 * 263.13149 * 21 20 18 49 49 H 1.09005 * 110.08538 * 141.92570 * 21 20 18 50 50 H 0.96996 * 120.00206 * 180.02562 * 26 25 23 51 51 H 1.09005 * 110.07051 * 247.12500 * 31 13 11 52 52 H 1.09000 * 110.07253 * 8.70670 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0026 2.0049 -0.0008 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6498 0.0015 7 6 4.8952 -1.5118 0.0029 8 6 5.7266 -1.2133 -1.2462 9 6 5.7255 -1.2107 1.2522 10 6 2.3241 -1.1126 0.0062 11 6 1.8859 -2.5202 0.0134 12 8 1.7058 -3.1065 -1.0366 13 7 1.6847 -3.1574 1.1839 14 6 1.9096 -2.4459 2.4458 15 6 2.7691 -3.2991 3.4097 16 6 2.1152 -4.6638 3.4879 17 1 1.0648 -4.5449 3.7534 18 6 2.2163 -5.3197 2.0832 19 1 3.2329 -5.2731 1.6926 20 6 1.7957 -6.7588 2.4231 21 6 2.4877 -6.9771 3.7961 22 7 2.7285 -5.6364 4.3790 23 6 3.4025 -5.3638 5.5394 24 1 3.5183 -4.3421 5.8694 25 6 3.9371 -6.4009 6.2916 26 7 3.7965 -7.6462 5.8892 27 14 4.8572 -6.0290 7.8742 28 1 4.8772 -4.5618 8.1021 29 1 4.1761 -6.6979 9.0116 30 1 6.2504 -6.5318 7.7666 31 6 1.2451 -4.5676 1.1831 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 0.8902 0.5134 34 1 -0.3633 -0.8898 0.5143 35 1 4.6054 -2.5626 0.0039 36 1 6.0164 -0.1625 -1.2472 37 1 6.6204 -1.8370 -1.2455 38 1 5.1350 -1.4279 -2.1363 39 1 5.1332 -1.4233 2.1422 40 1 6.6198 -1.8338 1.2530 41 1 6.0153 -0.1599 1.2512 42 1 2.4276 -1.5086 2.2426 43 1 0.9487 -2.2308 2.9134 44 1 2.7854 -2.8388 4.3976 45 1 3.7860 -3.3966 3.0296 46 1 0.7125 -6.8369 2.5158 47 1 2.1737 -7.4612 1.6802 48 1 3.4356 -7.4967 3.6558 49 1 1.8402 -7.5572 4.4536 50 1 4.1697 -8.3709 6.4149 51 1 0.2323 -4.6439 1.5790 52 1 1.2838 -4.9710 0.1712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036865547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:32 Heat of formation + Delta-G solvation = 53.896463 kcal Electronic energy + Delta-G solvation = -32543.331117 eV Core-core repulsion = 28544.540125 eV Total energy + Delta-G solvation = -3998.790992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73202 -39.80578 -38.01939 -35.85592 -35.24613 -32.77022 -32.27258 -31.49439 -31.04739 -29.45926 -28.19021 -27.37339 -27.15002 -24.91866 -23.81026 -23.37886 -22.33398 -21.72950 -20.05446 -19.60594 -19.17335 -18.76881 -17.67741 -16.75429 -16.21538 -15.75435 -15.09215 -15.05325 -14.97429 -14.71735 -14.37523 -14.34144 -13.83048 -13.73693 -13.48126 -13.38967 -13.00973 -12.90801 -12.81393 -12.67269 -12.45659 -12.36415 -12.17891 -11.64229 -11.55334 -11.46460 -11.37543 -11.23931 -11.12375 -10.83131 -10.77468 -10.71654 -10.65215 -10.13914 -10.07779 -9.87527 -9.70771 -9.61950 -9.53368 -9.44282 -8.67784 -8.61765 -8.44316 -6.82306 -5.70893 -3.03757 1.52600 2.32614 2.50867 2.68588 3.26005 3.39460 3.44849 3.47373 4.20753 4.41078 4.49684 4.65930 4.83617 4.89298 5.10310 5.11357 5.12945 5.14540 5.21619 5.34517 5.39206 5.40731 5.52155 5.56759 5.59963 5.63578 5.65807 5.68197 5.81499 5.83985 5.86806 5.92774 5.97719 6.06778 6.16889 6.18255 6.20488 6.24484 6.26859 6.35500 6.40612 6.55076 6.64295 6.68082 6.88093 6.97298 7.09693 7.44092 7.55714 7.57274 7.63359 7.82620 8.25443 8.32487 9.20359 9.84071 10.52293 11.41684 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003427 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.655649 B = 8167.653796 C = 8924.379561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.124 3.876 3 N -0.465 5.465 4 H 0.440 0.560 5 N -0.289 5.289 6 C 0.128 3.872 7 C -0.019 4.019 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.271 4.271 11 C 0.594 3.406 12 O -0.543 6.543 13 N -0.597 5.597 14 C 0.115 3.885 15 C -0.128 4.128 16 C 0.167 3.833 17 H 0.019 0.981 18 C -0.123 4.123 19 H 0.080 0.920 20 C -0.135 4.135 21 C 0.177 3.823 22 N -0.595 5.595 23 C -0.224 4.224 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.908 3.092 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 C 0.126 3.874 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.251 0.749 51 H 0.068 0.932 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 15.804 -12.361 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.008 4.008 3 N -0.171 5.171 4 H 0.284 0.716 5 N -0.110 5.110 6 C -0.039 4.039 7 C -0.039 4.039 8 C -0.199 4.199 9 C -0.200 4.200 10 C -0.286 4.286 11 C 0.381 3.619 12 O -0.420 6.420 13 N -0.329 5.329 14 C -0.008 4.008 15 C -0.167 4.167 16 C 0.059 3.941 17 H 0.037 0.963 18 C -0.143 4.143 19 H 0.098 0.902 20 C -0.174 4.174 21 C 0.052 3.948 22 N -0.320 5.320 23 C -0.352 4.352 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.739 3.261 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 C 0.004 3.996 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.087 0.913 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.321 16.418 -12.697 21.200 hybrid contribution -0.179 -0.017 1.027 1.043 sum -4.501 16.401 -11.670 20.626 Atomic orbital electron populations 1.20549 0.86599 1.04368 1.04048 1.21311 0.94364 0.86750 0.98352 1.45974 1.04149 1.08117 1.58904 0.71588 1.77050 0.95433 1.12512 1.26045 1.22269 0.94042 0.91038 0.96588 1.19690 0.89854 0.97380 0.97011 1.21792 0.99464 1.02113 0.96481 1.21823 0.99699 1.02091 0.96432 1.19864 0.93027 0.93536 1.22180 1.17394 0.76367 0.84778 0.83388 1.90752 1.52041 1.67695 1.31539 1.48268 1.66057 1.12894 1.05720 1.21859 0.99802 0.95249 0.83929 1.22043 0.99297 0.96855 0.98472 1.20661 0.95027 0.89434 0.88989 0.96324 1.22635 0.99068 0.96022 0.96605 0.90182 1.22696 0.99952 0.94831 0.99917 1.21528 0.98259 0.86960 0.88009 1.44222 1.63950 1.00844 1.22937 1.19027 1.26755 0.92830 0.96564 0.90388 1.24777 1.01172 0.95353 0.99101 1.69949 1.49969 0.97856 1.39069 0.86105 0.79388 0.77341 0.83302 1.20560 1.21834 1.21818 1.21656 0.97340 0.79129 1.01500 0.89469 0.90431 0.89326 0.89407 0.92090 0.91787 0.92525 0.92088 0.91671 0.92116 0.90427 0.92005 0.90767 0.91235 0.92348 0.92056 0.92769 0.94408 0.93846 0.91329 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.25 36.01 0.37 -0.32 16 2 C 0.12 1.28 7.29 -81.60 -0.60 0.69 16 3 N -0.47 -4.40 7.29 33.86 0.25 -4.15 16 4 H 0.44 2.54 8.96 -182.72 -1.64 0.91 16 5 N -0.29 -3.56 12.63 33.90 0.43 -3.13 16 6 C 0.13 1.69 5.56 -82.02 -0.46 1.23 16 7 C -0.02 -0.23 3.31 -91.77 -0.30 -0.54 16 8 C -0.14 -1.54 9.17 37.15 0.34 -1.20 16 9 C -0.14 -1.65 9.18 37.16 0.34 -1.31 16 10 C -0.27 -3.61 3.83 -105.07 -0.40 -4.01 16 11 C 0.59 9.06 6.53 -12.52 -0.08 8.98 16 12 O -0.54 -9.94 16.46 5.27 0.09 -9.85 16 13 N -0.60 -8.64 3.00 -173.20 -0.52 -9.16 16 14 C 0.12 1.56 6.23 -3.04 -0.02 1.55 16 15 C -0.13 -2.13 5.52 -26.54 -0.15 -2.28 16 16 C 0.17 3.25 2.57 -67.98 -0.17 3.07 16 17 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 18 C -0.12 -2.14 2.86 -89.35 -0.26 -2.40 16 19 H 0.08 1.52 8.11 -51.93 -0.42 1.09 16 20 C -0.14 -2.46 6.54 -25.13 -0.16 -2.63 16 21 C 0.18 4.19 5.45 -1.92 -0.01 4.18 16 22 N -0.60 -14.54 3.35 -163.09 -0.55 -15.09 16 23 C -0.22 -5.98 9.86 -15.06 -0.15 -6.13 16 24 H 0.08 2.01 7.18 -52.49 -0.38 1.63 16 25 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 26 N -0.92 -26.66 10.43 55.49 0.58 -26.08 16 27 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 C 0.13 1.89 5.96 -3.74 -0.02 1.86 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.71 7.95 -51.93 -0.41 0.29 16 35 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.27 7.59 -51.93 -0.39 0.87 16 45 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 46 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 49 H 0.04 0.98 7.76 -51.93 -0.40 0.58 16 50 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 52 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -32.86 407.03 -10.57 -43.43 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -10.13 Total: 0.72 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.82 Total: 0.44 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.19 Total: -57.62 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.86 -10.57 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036865547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.330 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds