Wall clock time and date at job start Wed Apr 1 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34255 * 126.29135 * 2 1 4 4 H 0.97007 * 125.75390 * 359.94019 * 3 2 1 5 5 N 1.39932 * 108.49591 * 179.97438 * 3 2 1 6 6 C 1.30449 * 108.89369 * 359.97438 * 5 3 2 7 7 C 1.50704 * 125.98862 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47186 * 299.97443 * 7 6 5 9 9 C 1.52998 * 109.47091 * 59.97589 * 7 6 5 10 10 C 1.38039 * 126.29302 * 179.68284 * 2 1 3 11 11 C 1.47429 * 126.41402 * 0.02562 * 10 2 1 12 12 O 1.21605 * 120.00499 * 90.02090 * 11 10 2 13 13 N 1.34773 * 120.00215 * 270.02026 * 11 10 2 14 14 C 1.46607 * 119.68344 * 359.72776 * 13 11 10 15 15 C 1.54786 * 110.71071 * 228.03119 * 14 13 11 16 16 C 1.51526 * 106.79981 * 308.79774 * 15 14 13 17 17 H 1.08998 * 109.27828 * 306.62282 * 16 15 14 18 18 C 1.55356 * 107.78708 * 65.18859 * 16 15 14 19 19 H 1.09006 * 111.50862 * 49.83300 * 18 16 15 20 20 C 1.53738 * 100.22374 * 168.51393 * 18 16 15 21 21 C 1.55290 * 101.83705 * 320.90254 * 20 18 16 22 22 N 1.45464 * 116.86365 * 181.93081 * 16 15 14 23 23 C 1.36937 * 126.40796 * 30.89064 * 22 16 15 24 24 H 1.07997 * 119.99953 * 359.97438 * 23 22 16 25 25 C 1.38817 * 120.00248 * 179.97438 * 23 22 16 26 26 N 1.31623 * 119.99818 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00232 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47088 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47037 * 120.00217 * 27 25 23 30 30 H 1.48505 * 109.47007 * 239.99926 * 27 25 23 31 31 C 1.47717 * 119.69062 * 179.97438 * 13 11 10 32 32 H 1.09002 * 109.47152 * 90.02639 * 1 2 3 33 33 H 1.09001 * 109.46980 * 330.02740 * 1 2 3 34 34 H 1.09004 * 109.47113 * 210.02721 * 1 2 3 35 35 H 1.08998 * 109.47154 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47224 * 59.99859 * 8 7 6 37 37 H 1.08997 * 109.47656 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47338 * 299.99849 * 8 7 6 39 39 H 1.09001 * 109.47575 * 59.99816 * 9 7 6 40 40 H 1.09000 * 109.47295 * 180.02562 * 9 7 6 41 41 H 1.08998 * 109.46853 * 299.99856 * 9 7 6 42 42 H 1.09002 * 109.25260 * 348.13037 * 14 13 11 43 43 H 1.08999 * 109.25479 * 107.56447 * 14 13 11 44 44 H 1.08999 * 109.86952 * 189.66672 * 15 14 13 45 45 H 1.09006 * 110.49517 * 68.27534 * 15 14 13 46 46 H 1.08999 * 110.95710 * 79.03572 * 20 18 16 47 47 H 1.09004 * 110.95745 * 202.77247 * 20 18 16 48 48 H 1.09002 * 109.92253 * 263.13149 * 21 20 18 49 49 H 1.09005 * 110.08538 * 141.92570 * 21 20 18 50 50 H 0.96996 * 120.00206 * 180.02562 * 26 25 23 51 51 H 1.09005 * 110.07051 * 247.12500 * 31 13 11 52 52 H 1.09000 * 110.07253 * 8.70670 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0026 2.0049 -0.0008 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6498 0.0015 7 6 4.8952 -1.5118 0.0029 8 6 5.7266 -1.2133 -1.2462 9 6 5.7255 -1.2107 1.2522 10 6 2.3241 -1.1126 0.0062 11 6 1.8859 -2.5202 0.0134 12 8 1.7058 -3.1065 -1.0366 13 7 1.6847 -3.1574 1.1839 14 6 1.9096 -2.4459 2.4458 15 6 2.7691 -3.2991 3.4097 16 6 2.1152 -4.6638 3.4879 17 1 1.0648 -4.5449 3.7534 18 6 2.2163 -5.3197 2.0832 19 1 3.2329 -5.2731 1.6926 20 6 1.7957 -6.7588 2.4231 21 6 2.4877 -6.9771 3.7961 22 7 2.7285 -5.6364 4.3790 23 6 3.4025 -5.3638 5.5394 24 1 3.5183 -4.3421 5.8694 25 6 3.9371 -6.4009 6.2916 26 7 3.7965 -7.6462 5.8892 27 14 4.8572 -6.0290 7.8742 28 1 4.8772 -4.5618 8.1021 29 1 4.1761 -6.6979 9.0116 30 1 6.2504 -6.5318 7.7666 31 6 1.2451 -4.5676 1.1831 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 0.8902 0.5134 34 1 -0.3633 -0.8898 0.5143 35 1 4.6054 -2.5626 0.0039 36 1 6.0164 -0.1625 -1.2472 37 1 6.6204 -1.8370 -1.2455 38 1 5.1350 -1.4279 -2.1363 39 1 5.1332 -1.4233 2.1422 40 1 6.6198 -1.8338 1.2530 41 1 6.0153 -0.1599 1.2512 42 1 2.4276 -1.5086 2.2426 43 1 0.9487 -2.2308 2.9134 44 1 2.7854 -2.8388 4.3976 45 1 3.7860 -3.3966 3.0296 46 1 0.7125 -6.8369 2.5158 47 1 2.1737 -7.4612 1.6802 48 1 3.4356 -7.4967 3.6558 49 1 1.8402 -7.5572 4.4536 50 1 4.1697 -8.3709 6.4149 51 1 0.2323 -4.6439 1.5790 52 1 1.2838 -4.9710 0.1712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036865547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:31 Heat of formation + Delta-G solvation = 33.843611 kcal Electronic energy + Delta-G solvation = -32544.200674 eV Core-core repulsion = 28544.540125 eV Total energy + Delta-G solvation = -3999.660549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64198 -41.10638 -39.45328 -36.77280 -36.69855 -34.52522 -33.11550 -32.97807 -32.11305 -31.02438 -29.65189 -28.24041 -28.05897 -26.65800 -25.26419 -24.27716 -23.74455 -22.84908 -21.82316 -21.03779 -20.08384 -19.87629 -18.82459 -18.23272 -17.60267 -16.99226 -16.74759 -16.13326 -15.99719 -15.90393 -15.73513 -15.59135 -15.29151 -15.04225 -14.70699 -14.26138 -14.21970 -14.17512 -13.95039 -13.73227 -13.53647 -13.31819 -13.28480 -13.09217 -13.06151 -13.03564 -12.70163 -12.46816 -12.42122 -12.19207 -12.07536 -12.04260 -11.94771 -11.75912 -11.62349 -11.58079 -11.48097 -10.99566 -10.90534 -10.68544 -10.37908 -9.68361 -9.58511 -8.83394 -7.80327 -5.14126 0.70457 1.35903 1.47517 1.48014 1.52304 1.57762 1.76148 2.13834 2.52727 3.34554 3.38846 3.46971 3.59268 3.81465 3.85989 3.90676 4.00705 4.05532 4.17234 4.18924 4.23516 4.26716 4.35010 4.43560 4.47908 4.54590 4.64144 4.68645 4.75755 4.76881 4.83492 4.84231 4.88884 4.91958 4.94355 4.95134 5.01416 5.08400 5.10172 5.12368 5.22789 5.26243 5.32486 5.43400 5.50297 5.58272 5.59651 5.70746 5.81076 6.24351 6.30045 6.39347 6.58778 7.13080 7.15721 7.83434 8.52068 9.31729 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003427 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.655649 B = 8167.653796 C = 8924.379561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.457 0.543 5 N -0.305 5.305 6 C 0.119 3.881 7 C -0.021 4.021 8 C -0.135 4.135 9 C -0.136 4.136 10 C -0.308 4.308 11 C 0.601 3.399 12 O -0.578 6.578 13 N -0.596 5.596 14 C 0.128 3.872 15 C -0.120 4.120 16 C 0.159 3.841 17 H 0.026 0.974 18 C -0.108 4.108 19 H 0.060 0.940 20 C -0.120 4.120 21 C 0.182 3.818 22 N -0.615 5.615 23 C -0.225 4.225 24 H 0.086 0.914 25 C -0.069 4.069 26 N -0.954 5.954 27 Si 0.970 3.030 28 H -0.263 1.263 29 H -0.295 1.295 30 H -0.297 1.297 31 C 0.134 3.866 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.015 0.985 49 H 0.004 0.996 50 H 0.244 0.756 51 H 0.090 0.910 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 18.804 -12.909 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.011 3.989 3 N -0.157 5.157 4 H 0.305 0.695 5 N -0.127 5.127 6 C -0.048 4.048 7 C -0.042 4.042 8 C -0.192 4.192 9 C -0.194 4.194 10 C -0.323 4.323 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.327 5.327 14 C 0.005 3.995 15 C -0.159 4.159 16 C 0.052 3.948 17 H 0.044 0.956 18 C -0.129 4.129 19 H 0.079 0.921 20 C -0.159 4.159 21 C 0.057 3.943 22 N -0.340 5.340 23 C -0.354 4.354 24 H 0.104 0.896 25 C -0.261 4.261 26 N -0.604 5.604 27 Si 0.800 3.200 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.224 1.224 31 C 0.012 3.988 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.033 0.967 49 H 0.023 0.977 50 H 0.053 0.947 51 H 0.108 0.892 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.740 19.492 -13.252 24.259 hybrid contribution 0.223 -0.897 1.168 1.490 sum -5.517 18.595 -12.084 22.852 Atomic orbital electron populations 1.20714 0.83996 1.05772 1.05080 1.21718 0.95687 0.85869 0.95631 1.45988 1.03198 1.09000 1.57470 0.69469 1.76993 0.97009 1.12007 1.26644 1.22300 0.94119 0.91420 0.96997 1.19665 0.90334 0.96231 0.97926 1.21743 0.99512 1.02608 0.95382 1.21758 0.99553 1.02505 0.95537 1.19823 0.93755 0.93184 1.25509 1.17608 0.75286 0.85432 0.82757 1.90728 1.53605 1.68742 1.32712 1.48276 1.65742 1.12623 1.06028 1.21794 1.00348 0.94577 0.82765 1.21942 0.98895 0.95794 0.99268 1.20887 0.94942 0.90072 0.88888 0.95644 1.22462 0.98895 0.95544 0.95964 0.92105 1.22567 1.00754 0.95787 0.96772 1.21297 0.96181 0.86462 0.90330 1.44505 1.63890 1.02331 1.23254 1.19419 1.25744 0.93095 0.97145 0.89581 1.25574 1.02846 0.95350 1.02374 1.70171 1.51435 0.98570 1.40174 0.85113 0.77509 0.77895 0.79511 1.18729 1.22265 1.22426 1.21557 0.97396 0.79147 1.00719 0.88497 0.87092 0.89844 0.91511 0.91611 0.90643 0.93432 0.93241 0.91126 0.91536 0.89355 0.89669 0.91002 0.92856 0.90080 0.90513 0.96670 0.97736 0.94698 0.89228 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.25 71.24 0.73 -0.27 16 2 C 0.14 2.56 7.29 42.14 0.31 2.86 16 3 N -0.45 -7.10 7.29 -46.80 -0.34 -7.45 16 4 H 0.46 3.63 8.96 -213.42 -1.91 1.72 16 5 N -0.30 -6.91 12.63 -46.67 -0.59 -7.50 16 6 C 0.12 2.98 5.56 43.52 0.24 3.23 16 7 C -0.02 -0.52 3.31 -11.54 -0.04 -0.55 16 8 C -0.13 -2.88 9.17 71.98 0.66 -2.22 16 9 C -0.14 -3.07 9.18 71.98 0.66 -2.41 16 10 C -0.31 -7.66 3.83 -20.15 -0.08 -7.74 16 11 C 0.60 17.54 6.53 86.66 0.57 18.11 16 12 O -0.58 -20.74 16.46 -4.05 -0.07 -20.81 16 13 N -0.60 -16.17 3.00 -820.13 -2.46 -18.64 16 14 C 0.13 3.19 6.23 86.97 0.54 3.73 16 15 C -0.12 -3.89 5.52 30.72 0.17 -3.72 16 16 C 0.16 6.07 2.57 45.51 0.12 6.18 16 17 H 0.03 0.98 7.92 -2.39 -0.02 0.96 16 18 C -0.11 -3.71 2.86 -9.97 -0.03 -3.73 16 19 H 0.06 2.33 8.11 -2.38 -0.02 2.31 16 20 C -0.12 -4.32 6.54 31.63 0.21 -4.12 16 21 C 0.18 8.95 5.45 86.85 0.47 9.42 16 22 N -0.62 -30.59 3.35 -669.91 -2.24 -32.83 16 23 C -0.22 -12.20 9.86 84.03 0.83 -11.37 16 24 H 0.09 4.41 7.18 -2.91 -0.02 4.39 16 25 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 26 N -0.95 -57.52 10.43 21.65 0.23 -57.30 16 27 Si 0.97 45.52 29.55 68.60 2.03 47.54 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 30 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 31 C 0.13 3.77 5.96 85.91 0.51 4.28 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 1.02 7.95 -2.38 -0.02 1.00 16 35 H 0.07 1.89 7.56 -2.39 -0.02 1.88 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 2.08 6.11 -2.39 -0.01 2.07 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.37 7.59 -2.39 -0.02 2.35 16 45 H 0.05 1.89 8.11 -2.38 -0.02 1.88 16 46 H 0.08 2.57 8.11 -2.39 -0.02 2.56 16 47 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 48 H 0.01 0.84 7.21 -2.39 -0.02 0.83 16 49 H 0.00 0.24 7.76 -2.38 -0.02 0.22 16 50 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 51 H 0.09 2.20 8.08 -2.38 -0.02 2.18 16 52 H 0.09 2.60 6.99 -2.39 -0.02 2.58 16 Total: -1.00 -74.07 407.03 1.89 -72.18 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -1.00 Total: 16.54 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.34 Total: 8.26 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -5.41 Total: -123.71 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.07 Total: -20.81 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.07 1.89 -72.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036865547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.022 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds