Wall clock time and date at job start Wed Apr 1 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34261 * 126.29663 * 2 1 4 4 H 0.96993 * 125.75280 * 359.95382 * 3 2 1 5 5 N 1.39931 * 108.49250 * 180.24329 * 3 2 1 6 6 C 1.30443 * 108.89801 * 359.74906 * 5 3 2 7 7 C 1.50703 * 125.98779 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.47285 * 299.99725 * 7 6 5 9 9 C 1.52998 * 109.47408 * 59.99670 * 7 6 5 10 10 C 1.38051 * 126.29111 * 179.81686 * 2 1 3 11 11 C 1.47433 * 126.41001 * 0.02615 * 10 2 1 12 12 O 1.21610 * 119.99630 * 269.68293 * 11 10 2 13 13 N 1.34770 * 120.00008 * 89.68409 * 11 10 2 14 14 C 1.46817 * 120.30890 * 359.97438 * 13 11 10 15 15 C 1.52956 * 107.40559 * 235.00442 * 14 13 11 16 16 C 1.53040 * 109.99751 * 298.54473 * 15 14 13 17 17 H 1.09008 * 110.62042 * 289.27798 * 16 15 14 18 18 C 1.51779 * 112.25936 * 52.94962 * 16 15 14 19 19 H 1.08996 * 105.74649 * 207.28200 * 18 16 15 20 20 C 1.53387 * 105.81714 * 95.43635 * 18 16 15 21 21 C 1.54459 * 102.53841 * 29.54222 * 20 18 16 22 22 N 1.46864 * 106.66556 * 332.27192 * 21 20 18 23 23 C 1.36941 * 125.33977 * 195.32762 * 22 21 20 24 24 H 1.08001 * 119.99878 * 162.44038 * 23 22 21 25 25 C 1.38805 * 119.99660 * 342.44634 * 23 22 21 26 26 N 1.31621 * 120.00363 * 329.63464 * 25 23 22 27 27 Si 1.86806 * 119.99893 * 149.63991 * 25 23 22 28 28 H 1.48502 * 109.47092 * 179.97438 * 27 25 23 29 29 H 1.48500 * 109.47041 * 59.99556 * 27 25 23 30 30 H 1.48502 * 109.46627 * 299.99318 * 27 25 23 31 31 C 1.45268 * 120.15310 * 180.23586 * 13 11 10 32 32 H 1.09004 * 109.46861 * 270.18559 * 1 2 3 33 33 H 1.09003 * 109.47006 * 30.17589 * 1 2 3 34 34 H 1.08998 * 109.47468 * 150.17872 * 1 2 3 35 35 H 1.09003 * 109.47064 * 180.02562 * 7 6 5 36 36 H 1.08994 * 109.46910 * 59.99686 * 8 7 6 37 37 H 1.08995 * 109.47201 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.46804 * 300.00344 * 8 7 6 39 39 H 1.09006 * 109.47176 * 60.00303 * 9 7 6 40 40 H 1.09003 * 109.47378 * 180.02562 * 9 7 6 41 41 H 1.08997 * 109.47155 * 299.99943 * 9 7 6 42 42 H 1.09000 * 109.87591 * 115.52483 * 14 13 11 43 43 H 1.09004 * 109.87175 * 354.48133 * 14 13 11 44 44 H 1.08996 * 109.38765 * 178.37478 * 15 14 13 45 45 H 1.09000 * 109.38102 * 58.70618 * 15 14 13 46 46 H 1.08998 * 110.79749 * 271.27927 * 20 18 16 47 47 H 1.09001 * 110.79344 * 147.80884 * 20 18 16 48 48 H 1.09001 * 110.02577 * 212.96661 * 21 20 18 49 49 H 1.09004 * 110.05406 * 91.59389 * 21 20 18 50 50 H 0.96998 * 119.99964 * 353.99431 * 26 25 23 51 51 H 1.08999 * 108.84207 * 21.99718 * 31 13 11 52 52 H 1.09001 * 107.98956 * 264.72127 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0028 2.0048 -0.0006 5 7 3.6340 0.6542 -0.0056 6 6 3.6589 -0.6499 -0.0036 7 6 4.8950 -1.5120 -0.0075 8 6 5.7206 -1.2143 -1.2609 9 6 5.7314 -1.2102 1.2376 10 6 2.3241 -1.1127 0.0036 11 6 1.8857 -2.5203 0.0075 12 8 1.7101 -3.0995 1.0623 13 7 1.6796 -3.1652 -1.1578 14 6 1.8890 -2.4724 -2.4351 15 6 0.5946 -2.5962 -3.2405 16 6 0.2888 -4.0701 -3.5164 17 1 0.9957 -4.4804 -4.2377 18 6 0.2870 -4.9041 -2.2482 19 1 0.5554 -5.9141 -2.5580 20 6 -1.1782 -4.9825 -1.8014 21 6 -1.9426 -4.8860 -3.1401 22 7 -1.0869 -4.1253 -4.0599 23 6 -1.4961 -3.5606 -5.2384 24 1 -0.8965 -2.7942 -5.7069 25 6 -2.6817 -3.9732 -5.8307 26 7 -3.1022 -5.2100 -5.6700 27 14 -3.6806 -2.7730 -6.8562 28 1 -4.8936 -3.4550 -7.3746 29 1 -2.8586 -2.2920 -7.9956 30 1 -4.0833 -1.6182 -6.0139 31 6 1.2427 -4.5506 -1.1578 32 1 -0.3633 0.0033 1.0277 33 1 -0.3633 0.8884 -0.5166 34 1 -0.3634 -0.8915 -0.5110 35 1 4.6051 -2.5628 -0.0050 36 1 6.0103 -0.1636 -1.2639 37 1 6.6143 -1.8382 -1.2639 38 1 5.1247 -1.4294 -2.1479 39 1 5.1433 -1.4223 2.1305 40 1 6.6257 -1.8334 1.2345 41 1 6.0213 -0.1594 1.2345 42 1 2.7101 -2.9389 -2.9795 43 1 2.1136 -1.4212 -2.2540 44 1 0.7049 -2.0663 -4.1866 45 1 -0.2268 -2.1560 -2.6750 46 1 -1.4298 -4.1449 -1.1509 47 1 -1.3817 -5.9325 -1.3071 48 1 -2.8885 -4.3647 -2.9931 49 1 -2.1249 -5.8839 -3.5392 50 1 -2.5428 -5.8568 -5.2121 51 1 0.7703 -4.7708 -0.2004 52 1 2.1257 -5.1821 -1.2554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036865548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:35 Heat of formation + Delta-G solvation = 49.613174 kcal Electronic energy + Delta-G solvation = -32525.027386 eV Core-core repulsion = 28526.050657 eV Total energy + Delta-G solvation = -3998.976729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.74468 -39.94863 -38.15044 -35.95190 -35.43719 -33.09731 -32.27151 -31.70804 -31.05545 -29.51014 -28.31666 -27.45339 -27.30706 -25.00450 -23.89289 -23.45440 -22.73427 -21.97369 -20.29008 -19.38562 -19.25216 -18.03625 -17.80262 -17.53326 -16.67216 -15.76339 -15.36961 -15.08699 -14.91866 -14.65221 -14.50746 -14.37955 -13.88329 -13.66412 -13.52237 -13.39430 -13.18499 -13.06527 -12.83462 -12.79196 -12.61082 -12.35903 -12.32457 -11.95678 -11.66118 -11.64122 -11.39907 -11.38887 -11.24514 -11.07637 -10.74918 -10.67740 -10.50889 -10.37091 -10.04038 -9.92746 -9.87324 -9.66408 -9.56325 -9.52466 -8.68623 -8.53272 -8.30069 -6.94009 -6.09012 -3.15541 1.54359 2.29828 2.51177 2.65548 3.27117 3.47680 3.51782 3.69578 4.19052 4.41552 4.55032 4.67055 4.76793 4.89111 4.97598 4.99830 5.04633 5.13272 5.20930 5.25898 5.30208 5.32342 5.34006 5.45062 5.47559 5.63644 5.65593 5.66943 5.68323 5.72700 5.76581 5.82357 5.85043 5.92468 6.00775 6.07052 6.07522 6.09266 6.19937 6.25204 6.30629 6.40963 6.49005 6.71595 6.80730 6.93726 6.97846 7.04452 7.10384 7.42532 7.54115 7.80592 8.30639 8.49150 9.01693 9.81075 10.36631 11.20349 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.003213 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.413953 B = 8711.882202 C = 9214.638843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.133 3.867 3 N -0.464 5.464 4 H 0.441 0.559 5 N -0.290 5.290 6 C 0.124 3.876 7 C -0.018 4.018 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.273 4.273 11 C 0.596 3.404 12 O -0.543 6.543 13 N -0.591 5.591 14 C 0.110 3.890 15 C -0.134 4.134 16 C 0.172 3.828 17 H 0.041 0.959 18 C -0.107 4.107 19 H 0.065 0.935 20 C -0.124 4.124 21 C 0.143 3.857 22 N -0.595 5.595 23 C -0.336 4.336 24 H 0.064 0.936 25 C -0.024 4.024 26 N -0.912 5.912 27 Si 1.059 2.941 28 H -0.286 1.286 29 H -0.294 1.294 30 H -0.295 1.295 31 C 0.134 3.866 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.029 0.971 50 H 0.269 0.731 51 H 0.086 0.914 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 9.447 11.832 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 N -0.170 5.170 4 H 0.285 0.715 5 N -0.112 5.112 6 C -0.044 4.044 7 C -0.038 4.038 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.288 4.288 11 C 0.383 3.617 12 O -0.420 6.420 13 N -0.323 5.323 14 C -0.013 4.013 15 C -0.174 4.174 16 C 0.065 3.935 17 H 0.059 0.941 18 C -0.126 4.126 19 H 0.084 0.916 20 C -0.162 4.162 21 C 0.018 3.982 22 N -0.321 5.321 23 C -0.464 4.464 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.552 5.552 27 Si 0.889 3.111 28 H -0.212 1.212 29 H -0.221 1.221 30 H -0.222 1.222 31 C 0.011 3.989 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.057 0.943 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.104 0.896 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.737 10.370 11.414 20.002 hybrid contribution 0.678 -0.357 0.621 0.986 sum 13.415 10.014 12.035 20.618 Atomic orbital electron populations 1.20606 0.86348 1.04920 1.04084 1.21376 0.94501 0.86643 0.97409 1.45973 1.04062 1.08220 1.58764 0.71478 1.77009 0.95655 1.12422 1.26092 1.22204 0.93916 0.91128 0.97108 1.19663 0.89926 0.97287 0.96930 1.21816 0.99457 1.02316 0.96389 1.21795 0.99301 1.02185 0.96608 1.19785 0.92946 0.93410 1.22666 1.17337 0.76523 0.84676 0.83157 1.90755 1.52015 1.68186 1.31032 1.47625 1.65667 1.12858 1.06127 1.21767 0.98782 0.97140 0.83606 1.22315 0.95507 1.00088 0.99522 1.20433 0.89282 0.92164 0.91612 0.94118 1.20741 0.95714 1.00803 0.95377 0.91633 1.22446 0.94368 1.00788 0.98638 1.21281 0.93657 0.96023 0.87266 1.44781 1.02222 1.64122 1.20955 1.19641 1.09437 1.17131 1.00148 0.91852 1.25673 0.98333 0.98592 1.00074 1.70790 1.42689 1.01530 1.40205 0.83603 0.76660 0.75219 0.75592 1.21167 1.22066 1.22228 1.20275 0.97321 0.81189 1.00095 0.89409 0.90217 0.88978 0.89571 0.91939 0.91875 0.92346 0.92409 0.91914 0.92009 0.91546 0.90287 0.91281 0.91635 0.92160 0.91638 0.94292 0.95307 0.91923 0.89608 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.25 36.00 0.37 -0.59 16 2 C 0.13 1.51 7.17 -81.60 -0.59 0.93 16 3 N -0.46 -4.66 7.29 33.86 0.25 -4.41 16 4 H 0.44 2.90 8.96 -182.73 -1.64 1.27 16 5 N -0.29 -3.52 12.63 33.89 0.43 -3.09 16 6 C 0.12 1.56 5.77 -82.02 -0.47 1.08 16 7 C -0.02 -0.19 3.31 -91.77 -0.30 -0.49 16 8 C -0.14 -1.30 9.18 37.16 0.34 -0.95 16 9 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 10 C -0.27 -3.69 3.84 -105.06 -0.40 -4.09 16 11 C 0.60 9.16 6.54 -12.52 -0.08 9.08 16 12 O -0.54 -9.96 16.55 5.27 0.09 -9.87 16 13 N -0.59 -8.55 2.99 -177.93 -0.53 -9.09 16 14 C 0.11 1.51 6.34 -3.89 -0.02 1.49 16 15 C -0.13 -2.26 5.18 -26.73 -0.14 -2.40 16 16 C 0.17 3.32 3.41 -67.70 -0.23 3.09 16 17 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 18 C -0.11 -1.77 2.45 -92.89 -0.23 -2.00 16 19 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 20 C -0.12 -2.20 6.36 -25.76 -0.16 -2.36 16 21 C 0.14 3.25 5.62 -3.08 -0.02 3.24 16 22 N -0.60 -14.28 2.94 -164.00 -0.48 -14.76 16 23 C -0.34 -9.06 9.56 -15.06 -0.14 -9.20 16 24 H 0.06 1.70 7.71 -52.49 -0.40 1.30 16 25 C -0.02 -0.68 5.11 -17.43 -0.09 -0.77 16 26 N -0.91 -27.07 12.97 55.49 0.72 -26.35 16 27 Si 1.06 24.86 30.01 -169.99 -5.10 19.75 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 C 0.13 1.98 5.90 -6.55 -0.04 1.94 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.06 7.96 -51.93 -0.41 0.64 16 35 H 0.09 0.99 7.56 -51.93 -0.39 0.59 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.03 6.22 -51.93 -0.32 0.71 16 44 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.03 0.72 6.31 -51.93 -0.33 0.39 16 50 H 0.27 8.02 6.08 -40.82 -0.25 7.77 16 51 H 0.09 1.32 6.81 -51.93 -0.35 0.97 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -33.15 407.53 -10.43 -43.58 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -10.06 Total: 1.12 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.87 Total: -3.02 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.38 Total: -57.70 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.15 -10.43 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036865548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.194 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds