Wall clock time and date at job start Wed Apr 1 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 125.89875 * 2 1 4 4 N 1.40090 * 108.20714 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03780 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92084 * 0.02562 * 4 3 2 7 7 C 1.50706 * 126.12086 * 179.97438 * 6 4 3 8 8 C 1.35306 * 107.74948 * 0.22558 * 6 4 3 9 9 C 1.50700 * 126.04226 * 179.77318 * 8 6 4 10 10 C 1.52999 * 109.47195 * 89.99937 * 9 8 6 11 11 C 1.50703 * 109.47577 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99619 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00488 * 179.97438 * 11 10 9 14 14 C 1.46596 * 119.68576 * 359.72727 * 13 11 10 15 15 C 1.53563 * 110.80005 * 227.76337 * 14 13 11 16 16 C 1.51516 * 107.42175 * 309.20108 * 15 14 13 17 17 H 1.09000 * 108.81611 * 306.40296 * 16 15 14 18 18 C 1.55364 * 107.79168 * 64.71254 * 16 15 14 19 19 H 1.08997 * 111.50453 * 50.39085 * 18 16 15 20 20 C 1.53736 * 100.22456 * 169.07287 * 18 16 15 21 21 C 1.55289 * 101.84182 * 320.90250 * 20 18 16 22 22 N 1.45469 * 117.34296 * 181.75030 * 16 15 14 23 23 C 1.36943 * 126.40650 * 30.61049 * 22 16 15 24 24 H 1.07998 * 119.99885 * 0.02562 * 23 22 16 25 25 C 1.38811 * 120.00152 * 180.02562 * 23 22 16 26 26 N 1.31616 * 120.00024 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47193 * 59.99774 * 27 25 23 29 29 H 1.48499 * 109.46913 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46880 * 300.00048 * 27 25 23 31 31 C 1.47724 * 119.68996 * 179.97438 * 13 11 10 32 32 H 1.08997 * 109.46821 * 89.97506 * 1 2 3 33 33 H 1.08997 * 109.46792 * 209.97657 * 1 2 3 34 34 H 1.08999 * 109.46853 * 329.97693 * 1 2 3 35 35 H 1.08999 * 109.46995 * 90.02290 * 7 6 4 36 36 H 1.08994 * 109.46790 * 210.01977 * 7 6 4 37 37 H 1.08997 * 109.47305 * 330.02417 * 7 6 4 38 38 H 1.09002 * 109.47598 * 209.99946 * 9 8 6 39 39 H 1.09005 * 109.46892 * 330.00170 * 9 8 6 40 40 H 1.09013 * 109.47231 * 300.00217 * 10 9 8 41 41 H 1.08996 * 109.47235 * 60.00185 * 10 9 8 42 42 H 1.09003 * 109.25400 * 348.12778 * 14 13 11 43 43 H 1.08998 * 109.25575 * 107.56187 * 14 13 11 44 44 H 1.08998 * 109.96176 * 189.64931 * 15 14 13 45 45 H 1.09008 * 109.72712 * 68.61294 * 15 14 13 46 46 H 1.09005 * 110.95253 * 79.03524 * 20 18 16 47 47 H 1.08998 * 110.96005 * 202.76203 * 20 18 16 48 48 H 1.08998 * 109.92345 * 263.13243 * 21 20 18 49 49 H 1.09004 * 109.92056 * 141.82776 * 21 20 18 50 50 H 0.96999 * 120.00354 * 179.97438 * 26 25 23 51 51 H 1.09002 * 110.06896 * 247.13488 * 31 13 11 52 52 H 1.09001 * 110.06543 * 8.59916 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 1 4.3909 1.2080 -0.0004 6 6 3.6142 -0.7153 -0.0015 7 6 4.8352 -1.5989 -0.0030 8 6 2.3273 -1.1330 -0.0066 9 6 1.8600 -2.5657 -0.0142 10 6 1.6983 -3.0570 1.4257 11 6 1.2316 -4.4899 1.4183 12 8 1.0462 -5.0617 0.3649 13 7 1.0204 -5.1360 2.5820 14 6 1.2525 -4.4401 3.8512 15 6 2.0869 -5.3082 4.8044 16 6 1.4276 -6.6707 4.8715 17 1 0.3784 -6.5409 5.1366 18 6 1.5224 -7.3139 3.4604 19 1 2.5400 -7.2766 3.0718 20 6 1.0827 -8.7508 3.7854 21 6 1.7696 -8.9917 5.1571 22 7 2.0267 -7.6601 5.7537 23 6 2.7025 -7.4080 6.9178 24 1 2.8304 -6.3911 7.2585 25 6 3.2232 -8.4592 7.6598 26 7 3.0669 -9.6985 7.2449 27 14 4.1444 -8.1153 9.2481 28 1 3.2453 -7.4149 10.2001 29 1 4.5967 -9.3973 9.8455 30 1 5.3240 -7.2601 8.9608 31 6 0.5624 -6.5404 2.5666 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5135 34 1 -0.3633 0.8898 0.5142 35 1 5.1299 -1.8129 1.0244 36 1 4.6075 -2.5323 -0.5176 37 1 5.6510 -1.0904 -0.5166 38 1 0.9025 -2.6329 -0.5307 39 1 2.5948 -3.1848 -0.5289 40 1 2.6559 -2.9898 1.9423 41 1 0.9636 -2.4380 1.9405 42 1 1.7830 -3.5077 3.6582 43 1 0.2938 -4.2172 4.3195 44 1 2.1076 -4.8571 5.7965 45 1 3.1020 -5.4061 4.4194 46 1 -0.0017 -8.8156 3.8757 47 1 1.4524 -9.4506 3.0360 48 1 2.7108 -9.5222 5.0131 49 1 1.1106 -9.5685 5.8062 50 1 3.4310 -10.4331 7.7632 51 1 -0.4519 -6.6074 2.9600 52 1 0.5958 -6.9335 1.5504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036892177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:54 Heat of formation + Delta-G solvation = 51.386284 kcal Electronic energy + Delta-G solvation = -31027.754796 eV Core-core repulsion = 27028.854954 eV Total energy + Delta-G solvation = -3998.899841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62905 -40.20398 -38.29908 -35.36300 -34.39840 -33.61800 -32.70612 -31.56522 -30.81551 -29.56318 -28.40898 -27.95462 -27.19473 -25.03064 -24.34055 -22.86168 -22.32087 -20.41066 -20.09950 -19.77744 -19.43480 -18.71303 -17.61548 -16.99697 -16.22144 -15.84362 -15.65653 -15.29096 -14.99315 -14.50602 -14.30571 -13.94992 -13.92644 -13.69783 -13.60239 -13.46828 -13.08387 -12.90034 -12.79407 -12.70707 -12.58743 -12.42261 -12.40107 -12.14102 -11.91819 -11.62469 -11.47305 -11.40137 -11.18879 -10.83515 -10.80421 -10.71771 -10.62271 -10.18765 -10.09519 -9.89760 -9.64585 -9.60578 -9.48163 -9.44125 -8.63602 -8.57799 -8.46165 -6.84943 -5.72878 -3.06118 1.59761 2.43746 2.59419 2.75405 3.15798 3.38173 3.42586 3.44106 4.35707 4.39050 4.47442 4.61570 4.73766 4.92696 4.96730 5.05395 5.09275 5.10335 5.17689 5.25010 5.33267 5.37943 5.39019 5.45363 5.50009 5.52297 5.55444 5.61341 5.64235 5.72105 5.81581 5.83219 5.90714 6.03233 6.05613 6.12279 6.16504 6.18851 6.24130 6.36858 6.46782 6.51525 6.61789 6.63841 6.85382 7.03217 7.06425 7.45635 7.53513 7.55187 7.61073 7.79746 8.23289 8.30227 9.17986 9.81687 10.50038 11.39588 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002402 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.030238 B =11652.367191 C =12638.174274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.092 3.908 7 C -0.097 4.097 8 C -0.233 4.233 9 C -0.022 4.022 10 C -0.134 4.134 11 C 0.511 3.489 12 O -0.550 6.550 13 N -0.608 5.608 14 C 0.111 3.889 15 C -0.131 4.131 16 C 0.167 3.833 17 H 0.019 0.981 18 C -0.123 4.123 19 H 0.079 0.921 20 C -0.136 4.136 21 C 0.177 3.823 22 N -0.595 5.595 23 C -0.226 4.226 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.922 5.922 27 Si 0.909 3.091 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.286 1.286 31 C 0.125 3.875 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.253 0.747 51 H 0.067 0.933 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 16.977 -14.543 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.244 4.244 9 C -0.061 4.061 10 C -0.174 4.174 11 C 0.299 3.701 12 O -0.428 6.428 13 N -0.341 5.341 14 C -0.012 4.012 15 C -0.170 4.170 16 C 0.059 3.941 17 H 0.036 0.964 18 C -0.143 4.143 19 H 0.097 0.903 20 C -0.175 4.175 21 C 0.053 3.947 22 N -0.319 5.319 23 C -0.354 4.354 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.569 5.569 27 Si 0.740 3.260 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 C 0.003 3.997 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.712 17.797 -14.878 23.260 hybrid contribution 1.085 -0.343 1.140 1.611 sum -0.627 17.454 -13.738 22.221 Atomic orbital electron populations 1.20216 0.86717 1.03427 1.03128 1.22258 0.96953 0.90207 0.98749 1.77277 0.86506 1.22388 1.26043 1.46146 1.07273 1.04857 1.60401 0.71981 1.20929 0.97067 0.84862 1.00751 1.20524 0.92682 0.98569 1.03772 1.19736 0.91108 0.96330 1.17238 1.19584 1.02402 0.89336 0.94816 1.21712 1.03107 0.92992 0.99573 1.20734 0.77115 0.88809 0.83401 1.90665 1.52613 1.68856 1.30711 1.48350 1.66207 1.13587 1.05931 1.21715 1.00183 0.95257 0.84083 1.21834 0.99420 0.96998 0.98731 1.20628 0.95117 0.89284 0.89078 0.96364 1.22627 0.99069 0.95974 0.96657 0.90308 1.22702 0.99932 0.94885 0.99937 1.21532 0.98200 0.87065 0.87927 1.44201 1.64263 1.00699 1.22759 1.18939 1.27158 0.92804 0.96546 0.90468 1.24790 1.01162 0.95343 0.99118 1.69926 1.50003 0.97644 1.39311 0.86240 0.79690 0.76783 0.83285 1.21202 1.21633 1.21231 1.21612 0.97116 0.79524 1.01403 0.90418 0.90207 0.90887 0.89829 0.89195 0.91125 0.90451 0.90689 0.89104 0.89104 0.90215 0.91740 0.90562 0.91486 0.92327 0.92076 0.92750 0.94392 0.93697 0.91511 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.12 36.01 0.36 -0.23 16 2 C 0.09 0.88 7.22 -82.40 -0.59 0.29 16 3 N -0.30 -3.36 12.70 33.67 0.43 -2.94 16 4 N -0.48 -4.21 7.36 33.48 0.25 -3.96 16 5 H 0.44 2.51 8.96 -182.60 -1.64 0.87 16 6 C 0.09 0.81 7.21 -82.26 -0.59 0.21 16 7 C -0.10 -0.59 10.22 36.01 0.37 -0.22 16 8 C -0.23 -2.30 5.35 -105.06 -0.56 -2.86 16 9 C -0.02 -0.22 4.45 -27.88 -0.12 -0.35 16 10 C -0.13 -1.33 4.01 -27.88 -0.11 -1.44 16 11 C 0.51 6.87 7.67 -10.99 -0.08 6.79 16 12 O -0.55 -9.09 15.34 5.56 0.09 -9.01 16 13 N -0.61 -8.33 3.00 -172.70 -0.52 -8.85 16 14 C 0.11 1.37 6.18 -3.70 -0.02 1.35 16 15 C -0.13 -2.11 5.46 -27.19 -0.15 -2.25 16 16 C 0.17 3.24 2.57 -67.98 -0.17 3.07 16 17 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 18 C -0.12 -2.14 2.86 -89.35 -0.26 -2.40 16 19 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 20 C -0.14 -2.48 6.54 -25.14 -0.16 -2.65 16 21 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 22 N -0.59 -14.55 3.35 -163.09 -0.55 -15.10 16 23 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 24 H 0.08 1.97 7.21 -52.49 -0.38 1.59 16 25 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 26 N -0.92 -26.68 10.44 55.49 0.58 -26.10 16 27 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 C 0.13 1.88 5.96 -3.74 -0.02 1.85 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.56 7.14 -51.93 -0.37 0.19 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.07 0.78 7.10 -51.93 -0.37 0.41 16 40 H 0.09 0.83 7.53 -51.92 -0.39 0.44 16 41 H 0.09 0.79 8.00 -51.93 -0.42 0.38 16 42 H 0.08 0.79 5.84 -51.93 -0.30 0.49 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 45 H 0.07 1.14 8.11 -51.92 -0.42 0.72 16 46 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 49 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 51 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 52 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -33.40 404.44 -11.03 -44.43 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.99 Total: -0.05 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.38 Total: -1.15 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.19 Total: -56.95 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.40 -11.03 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036892177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.817 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds