Wall clock time and date at job start Wed Apr 1 2020 03:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 125.89875 * 2 1 4 4 N 1.40090 * 108.20714 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03780 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92084 * 0.02562 * 4 3 2 7 7 C 1.50706 * 126.12086 * 179.97438 * 6 4 3 8 8 C 1.35306 * 107.74948 * 0.22558 * 6 4 3 9 9 C 1.50700 * 126.04226 * 179.77318 * 8 6 4 10 10 C 1.52999 * 109.47195 * 89.99937 * 9 8 6 11 11 C 1.50703 * 109.47577 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99619 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00488 * 179.97438 * 11 10 9 14 14 C 1.46596 * 119.68576 * 359.72727 * 13 11 10 15 15 C 1.53563 * 110.80005 * 227.76337 * 14 13 11 16 16 C 1.51516 * 107.42175 * 309.20108 * 15 14 13 17 17 H 1.09000 * 108.81611 * 306.40296 * 16 15 14 18 18 C 1.55364 * 107.79168 * 64.71254 * 16 15 14 19 19 H 1.08997 * 111.50453 * 50.39085 * 18 16 15 20 20 C 1.53736 * 100.22456 * 169.07287 * 18 16 15 21 21 C 1.55289 * 101.84182 * 320.90250 * 20 18 16 22 22 N 1.45469 * 117.34296 * 181.75030 * 16 15 14 23 23 C 1.36943 * 126.40650 * 30.61049 * 22 16 15 24 24 H 1.07998 * 119.99885 * 0.02562 * 23 22 16 25 25 C 1.38811 * 120.00152 * 180.02562 * 23 22 16 26 26 N 1.31616 * 120.00024 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47193 * 59.99774 * 27 25 23 29 29 H 1.48499 * 109.46913 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46880 * 300.00048 * 27 25 23 31 31 C 1.47724 * 119.68996 * 179.97438 * 13 11 10 32 32 H 1.08997 * 109.46821 * 89.97506 * 1 2 3 33 33 H 1.08997 * 109.46792 * 209.97657 * 1 2 3 34 34 H 1.08999 * 109.46853 * 329.97693 * 1 2 3 35 35 H 1.08999 * 109.46995 * 90.02290 * 7 6 4 36 36 H 1.08994 * 109.46790 * 210.01977 * 7 6 4 37 37 H 1.08997 * 109.47305 * 330.02417 * 7 6 4 38 38 H 1.09002 * 109.47598 * 209.99946 * 9 8 6 39 39 H 1.09005 * 109.46892 * 330.00170 * 9 8 6 40 40 H 1.09013 * 109.47231 * 300.00217 * 10 9 8 41 41 H 1.08996 * 109.47235 * 60.00185 * 10 9 8 42 42 H 1.09003 * 109.25400 * 348.12778 * 14 13 11 43 43 H 1.08998 * 109.25575 * 107.56187 * 14 13 11 44 44 H 1.08998 * 109.96176 * 189.64931 * 15 14 13 45 45 H 1.09008 * 109.72712 * 68.61294 * 15 14 13 46 46 H 1.09005 * 110.95253 * 79.03524 * 20 18 16 47 47 H 1.08998 * 110.96005 * 202.76203 * 20 18 16 48 48 H 1.08998 * 109.92345 * 263.13243 * 21 20 18 49 49 H 1.09004 * 109.92056 * 141.82776 * 21 20 18 50 50 H 0.96999 * 120.00354 * 179.97438 * 26 25 23 51 51 H 1.09002 * 110.06896 * 247.13488 * 31 13 11 52 52 H 1.09001 * 110.06543 * 8.59916 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 1 4.3909 1.2080 -0.0004 6 6 3.6142 -0.7153 -0.0015 7 6 4.8352 -1.5989 -0.0030 8 6 2.3273 -1.1330 -0.0066 9 6 1.8600 -2.5657 -0.0142 10 6 1.6983 -3.0570 1.4257 11 6 1.2316 -4.4899 1.4183 12 8 1.0462 -5.0617 0.3649 13 7 1.0204 -5.1360 2.5820 14 6 1.2525 -4.4401 3.8512 15 6 2.0869 -5.3082 4.8044 16 6 1.4276 -6.6707 4.8715 17 1 0.3784 -6.5409 5.1366 18 6 1.5224 -7.3139 3.4604 19 1 2.5400 -7.2766 3.0718 20 6 1.0827 -8.7508 3.7854 21 6 1.7696 -8.9917 5.1571 22 7 2.0267 -7.6601 5.7537 23 6 2.7025 -7.4080 6.9178 24 1 2.8304 -6.3911 7.2585 25 6 3.2232 -8.4592 7.6598 26 7 3.0669 -9.6985 7.2449 27 14 4.1444 -8.1153 9.2481 28 1 3.2453 -7.4149 10.2001 29 1 4.5967 -9.3973 9.8455 30 1 5.3240 -7.2601 8.9608 31 6 0.5624 -6.5404 2.5666 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5135 34 1 -0.3633 0.8898 0.5142 35 1 5.1299 -1.8129 1.0244 36 1 4.6075 -2.5323 -0.5176 37 1 5.6510 -1.0904 -0.5166 38 1 0.9025 -2.6329 -0.5307 39 1 2.5948 -3.1848 -0.5289 40 1 2.6559 -2.9898 1.9423 41 1 0.9636 -2.4380 1.9405 42 1 1.7830 -3.5077 3.6582 43 1 0.2938 -4.2172 4.3195 44 1 2.1076 -4.8571 5.7965 45 1 3.1020 -5.4061 4.4194 46 1 -0.0017 -8.8156 3.8757 47 1 1.4524 -9.4506 3.0360 48 1 2.7108 -9.5222 5.0131 49 1 1.1106 -9.5685 5.8062 50 1 3.4310 -10.4331 7.7632 51 1 -0.4519 -6.6074 2.9600 52 1 0.5958 -6.9335 1.5504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036892177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:53 Heat of formation + Delta-G solvation = 31.149013 kcal Electronic energy + Delta-G solvation = -31028.632350 eV Core-core repulsion = 27028.854954 eV Total energy + Delta-G solvation = -3999.777395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31449 -41.39972 -39.68591 -36.75776 -35.20785 -34.47788 -34.23483 -32.98891 -31.78696 -30.96262 -29.70630 -28.76434 -27.91528 -26.66787 -25.56702 -24.01592 -23.65548 -21.84869 -21.18655 -21.04413 -20.20258 -19.82937 -18.64510 -18.22079 -17.60366 -16.93912 -16.79173 -16.64042 -16.08097 -15.86818 -15.68327 -15.26191 -15.03261 -14.73756 -14.43162 -14.32359 -14.11285 -14.07352 -13.82639 -13.68478 -13.47165 -13.35503 -13.21307 -13.15003 -13.09256 -13.00148 -12.78633 -12.62845 -12.62710 -12.44047 -12.08394 -11.99389 -11.93073 -11.73239 -11.57946 -11.48166 -11.34718 -10.96373 -10.69299 -10.66226 -10.16442 -9.60654 -9.27799 -8.84815 -7.81048 -5.15344 0.92889 1.47241 1.50029 1.56016 1.70384 1.73429 1.99930 2.12414 2.52559 3.37698 3.46235 3.63075 3.78370 3.83520 3.90399 3.94541 4.04655 4.17350 4.22191 4.25703 4.28044 4.33032 4.45135 4.54114 4.55334 4.63766 4.68716 4.72024 4.74975 4.77728 4.83013 4.86143 4.88056 4.92691 4.96713 5.05951 5.09966 5.12571 5.16201 5.20498 5.26228 5.31191 5.41767 5.49940 5.57888 5.61530 5.69136 5.79049 5.80132 6.23184 6.47250 6.50075 6.77933 7.11630 7.25747 7.82426 8.51460 9.30822 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002402 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.030238 B =11652.367191 C =12638.174274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.333 5.333 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.098 3.902 7 C -0.096 4.096 8 C -0.250 4.250 9 C -0.013 4.013 10 C -0.125 4.125 11 C 0.511 3.489 12 O -0.583 6.583 13 N -0.611 5.611 14 C 0.119 3.881 15 C -0.125 4.125 16 C 0.156 3.844 17 H 0.021 0.979 18 C -0.107 4.107 19 H 0.062 0.938 20 C -0.122 4.122 21 C 0.182 3.818 22 N -0.616 5.616 23 C -0.228 4.228 24 H 0.089 0.911 25 C -0.072 4.072 26 N -0.955 5.955 27 Si 0.974 3.026 28 H -0.277 1.277 29 H -0.300 1.300 30 H -0.276 1.276 31 C 0.134 3.866 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.016 0.984 49 H 0.003 0.997 50 H 0.244 0.756 51 H 0.080 0.920 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 19.491 -15.018 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.157 5.157 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.032 4.032 7 C -0.155 4.155 8 C -0.261 4.261 9 C -0.052 4.052 10 C -0.164 4.164 11 C 0.302 3.698 12 O -0.463 6.463 13 N -0.343 5.343 14 C -0.004 4.004 15 C -0.164 4.164 16 C 0.050 3.950 17 H 0.038 0.962 18 C -0.128 4.128 19 H 0.080 0.920 20 C -0.161 4.161 21 C 0.057 3.943 22 N -0.340 5.340 23 C -0.357 4.357 24 H 0.106 0.894 25 C -0.264 4.264 26 N -0.605 5.605 27 Si 0.803 3.197 28 H -0.203 1.203 29 H -0.226 1.226 30 H -0.202 1.202 31 C 0.011 3.989 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.034 0.966 49 H 0.021 0.979 50 H 0.053 0.947 51 H 0.098 0.902 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.831 20.378 -15.366 25.587 hybrid contribution 1.130 -1.117 1.248 2.020 sum -0.701 19.261 -14.117 23.891 Atomic orbital electron populations 1.20299 0.85442 1.04041 1.03731 1.22657 0.98017 0.90173 0.98230 1.77227 0.87592 1.23334 1.27507 1.46194 1.07129 1.05213 1.59895 0.70659 1.21326 0.97687 0.85004 0.99157 1.20618 0.92140 0.98130 1.04581 1.19783 0.91629 0.96063 1.18667 1.19443 1.01785 0.89319 0.94677 1.21719 1.04149 0.90562 1.00016 1.21304 0.76089 0.89880 0.82561 1.90658 1.53946 1.69880 1.31865 1.48412 1.66141 1.13054 1.06691 1.21765 1.00760 0.95203 0.82638 1.21765 0.99202 0.95568 0.99836 1.20881 0.94948 0.90294 0.88924 0.96184 1.22453 0.98957 0.95309 0.96058 0.91951 1.22574 1.00541 0.96118 0.96849 1.21296 0.96092 0.86689 0.90235 1.44496 1.64170 1.02220 1.23132 1.19382 1.26042 0.93189 0.97128 0.89375 1.25628 1.02921 0.95311 1.02536 1.70162 1.51560 0.98337 1.40450 0.85211 0.78703 0.76171 0.79638 1.20267 1.22644 1.20207 1.21437 0.96852 0.80159 1.00437 0.89818 0.89274 0.90532 0.88919 0.89337 0.89283 0.91216 0.91453 0.87675 0.87131 0.86906 0.90025 0.90688 0.92696 0.90418 0.90559 0.96579 0.97899 0.94662 0.90216 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.12 71.24 0.72 -0.33 16 2 C 0.08 1.44 7.22 43.10 0.31 1.75 16 3 N -0.33 -7.03 12.70 -47.38 -0.60 -7.63 16 4 N -0.47 -7.49 7.36 -48.00 -0.35 -7.84 16 5 H 0.45 4.34 8.96 -213.33 -1.91 2.43 16 6 C 0.10 1.49 7.21 41.41 0.30 1.78 16 7 C -0.10 -0.92 10.22 71.24 0.73 -0.19 16 8 C -0.25 -4.43 5.35 -20.15 -0.11 -4.54 16 9 C -0.01 -0.23 4.45 29.85 0.13 -0.10 16 10 C -0.12 -2.07 4.01 29.85 0.12 -1.95 16 11 C 0.51 12.35 7.67 87.66 0.67 13.02 16 12 O -0.58 -18.22 15.34 -3.04 -0.05 -18.27 16 13 N -0.61 -14.92 3.00 -818.71 -2.46 -17.38 16 14 C 0.12 2.50 6.18 86.55 0.54 3.03 16 15 C -0.12 -3.74 5.46 30.30 0.17 -3.58 16 16 C 0.16 5.89 2.57 45.51 0.12 6.01 16 17 H 0.02 0.78 7.92 -2.39 -0.02 0.76 16 18 C -0.11 -3.62 2.86 -9.97 -0.03 -3.65 16 19 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 20 C -0.12 -4.43 6.54 31.63 0.21 -4.22 16 21 C 0.18 8.96 5.45 86.85 0.47 9.43 16 22 N -0.62 -30.51 3.35 -669.90 -2.24 -32.76 16 23 C -0.23 -12.30 9.88 84.03 0.83 -11.47 16 24 H 0.09 4.43 7.21 -2.91 -0.02 4.41 16 25 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 26 N -0.96 -57.60 10.44 21.65 0.23 -57.38 16 27 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 30 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 31 C 0.13 3.70 5.96 85.91 0.51 4.21 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.03 7.95 -2.39 -0.02 1.01 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.90 7.14 -2.39 -0.02 0.89 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 1.34 7.90 -2.39 -0.02 1.32 16 39 H 0.07 1.29 7.10 -2.38 -0.02 1.27 16 40 H 0.11 1.50 7.53 -2.38 -0.02 1.48 16 41 H 0.11 1.45 8.00 -2.39 -0.02 1.43 16 42 H 0.11 1.68 5.84 -2.39 -0.01 1.67 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 2.28 7.62 -2.39 -0.02 2.26 16 45 H 0.05 1.78 8.11 -2.38 -0.02 1.76 16 46 H 0.08 2.53 8.12 -2.38 -0.02 2.51 16 47 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.02 0.89 7.21 -2.39 -0.02 0.88 16 49 H 0.00 0.15 7.77 -2.39 -0.02 0.13 16 50 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 52 H 0.09 2.49 6.99 -2.39 -0.02 2.48 16 Total: -1.00 -74.90 404.44 1.71 -73.19 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.99 Total: 15.29 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.15 Total: 5.65 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.43 Total: -122.98 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.90 1.71 -73.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036892177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.342 kcal (2) G-P(sol) polarization free energy of solvation -74.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds