Wall clock time and date at job start Wed Apr 1 2020 03:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12885 * 2 1 4 4 C 1.39871 * 107.92353 * 180.14680 * 3 2 1 5 5 C 1.50692 * 125.90145 * 179.86900 * 4 3 2 6 6 C 1.50696 * 109.47450 * 124.71566 * 5 4 3 7 7 O 1.21286 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00074 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.62933 * 359.72359 * 8 6 5 10 10 C 1.53625 * 108.54100 * 126.36893 * 9 8 6 11 11 C 1.53035 * 109.24652 * 54.85290 * 10 9 8 12 12 C 1.52999 * 109.46120 * 178.48983 * 11 10 9 13 13 H 1.09000 * 110.64298 * 59.36795 * 12 11 10 14 14 C 1.55161 * 110.71966 * 182.50883 * 12 11 10 15 15 C 1.55123 * 101.48222 * 153.73504 * 14 12 11 16 16 N 1.47415 * 104.94597 * 323.22114 * 15 14 12 17 17 C 1.36942 * 125.65180 * 203.96938 * 16 15 14 18 18 H 1.07994 * 120.00308 * 169.98527 * 17 16 15 19 19 C 1.38811 * 119.99727 * 349.98748 * 17 16 15 20 20 N 1.31622 * 120.00198 * 350.42024 * 19 17 16 21 21 Si 1.86797 * 120.00044 * 170.42072 * 19 17 16 22 22 H 1.48498 * 109.47231 * 94.13865 * 21 19 17 23 23 H 1.48500 * 109.47315 * 214.13938 * 21 19 17 24 24 H 1.48497 * 109.47256 * 334.13955 * 21 19 17 25 25 C 1.47020 * 108.70229 * 24.00684 * 16 15 14 26 26 C 1.53042 * 109.54091 * 298.51028 * 11 10 9 27 27 C 1.46928 * 120.62813 * 179.97438 * 8 6 5 28 28 N 1.30840 * 108.20066 * 359.60348 * 4 3 2 29 29 N 1.34954 * 126.12734 * 179.71304 * 2 1 3 30 30 H 0.96995 * 126.03447 * 359.97438 * 29 2 1 31 31 H 1.09002 * 109.46838 * 270.26336 * 1 2 3 32 32 H 1.09001 * 109.47097 * 30.26535 * 1 2 3 33 33 H 1.09000 * 109.47225 * 150.26289 * 1 2 3 34 34 H 1.08001 * 126.03921 * 0.03588 * 3 2 1 35 35 H 1.09009 * 109.47124 * 244.71472 * 5 4 3 36 36 H 1.09005 * 109.47207 * 4.71239 * 5 4 3 37 37 H 1.09004 * 109.58231 * 246.19302 * 9 8 6 38 38 H 1.08999 * 109.58840 * 6.62237 * 9 8 6 39 39 H 1.09005 * 109.63506 * 294.86048 * 10 9 8 40 40 H 1.09003 * 109.45830 * 174.73993 * 10 9 8 41 41 H 1.08999 * 109.46200 * 58.52931 * 11 10 9 42 42 H 1.08998 * 111.00183 * 271.93713 * 14 12 11 43 43 H 1.08996 * 111.00719 * 35.79216 * 14 12 11 44 44 H 1.09004 * 110.41380 * 204.29060 * 15 14 12 45 45 H 1.09006 * 110.30437 * 82.09545 * 15 14 12 46 46 H 0.97000 * 120.00390 * 180.02562 * 20 19 17 47 47 H 1.09009 * 109.88032 * 239.51963 * 25 16 15 48 48 H 1.09001 * 110.01405 * 118.43207 * 25 16 15 49 49 H 1.09000 * 109.49475 * 301.42076 * 26 11 10 50 50 H 1.08993 * 109.52589 * 181.33050 * 26 11 10 51 51 H 1.09004 * 109.59117 * 353.37141 * 27 8 6 52 52 H 1.08997 * 109.58653 * 113.80531 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0074 6 6 5.7389 1.1793 1.1582 7 8 5.4101 0.2927 1.9178 8 7 6.8954 1.8423 1.3567 9 6 7.3100 2.9145 0.4417 10 6 7.6008 4.1766 1.2680 11 6 8.6281 3.8439 2.3524 12 6 8.9496 5.1065 3.1545 13 1 8.0485 5.5060 3.6198 14 6 10.0366 4.8162 4.2230 15 6 10.6772 6.2178 4.4005 16 7 10.6744 6.8108 3.0509 17 6 11.5166 7.7968 2.6106 18 1 11.5463 8.0531 1.5620 19 6 12.3321 8.4668 3.5123 20 7 12.1654 8.2920 4.8061 21 14 13.6661 9.6164 2.8894 22 1 13.1425 11.0053 2.8467 23 1 14.8367 9.5565 3.8012 24 1 14.0799 9.2013 1.5249 25 6 9.6171 6.1690 2.2562 26 6 8.0567 2.7768 3.2888 27 6 7.7681 1.5029 2.4889 28 7 3.6334 -0.6524 0.0032 29 7 2.3027 -1.0900 0.0055 30 1 2.0055 -2.0133 0.0104 31 1 -0.3633 0.0047 1.0277 32 1 -0.3633 0.8876 -0.5180 33 1 -0.3634 -0.8923 -0.5097 34 1 1.9741 2.1211 0.0005 35 1 5.4034 1.3962 -0.9381 36 1 4.5484 2.5822 0.0772 37 1 8.2091 2.6102 -0.0942 38 1 6.5094 3.1180 -0.2694 39 1 6.6808 4.5291 1.7343 40 1 7.9991 4.9538 0.6157 41 1 9.5391 3.4681 1.8866 42 1 9.5871 4.4683 5.1530 43 1 10.7676 4.0981 3.8516 44 1 11.6977 6.1251 4.7721 45 1 10.0797 6.8232 5.0822 46 1 12.7350 8.7605 5.4362 47 1 10.0517 5.6917 1.3777 48 1 8.8797 6.9104 1.9483 49 1 7.1323 3.1425 3.7359 50 1 8.7791 2.5572 4.0748 51 1 7.2697 0.7748 3.1290 52 1 8.7037 1.0857 2.1169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039117260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:12 Heat of formation + Delta-G solvation = 49.681068 kcal Electronic energy + Delta-G solvation = -30236.924967 eV Core-core repulsion = 26237.951181 eV Total energy + Delta-G solvation = -3998.973785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55005 -40.20470 -38.37636 -36.54384 -33.83637 -33.57243 -32.07187 -31.66739 -31.20868 -29.41227 -28.64655 -27.61553 -27.28009 -25.16239 -23.71205 -23.22531 -21.52902 -20.85159 -20.18345 -19.98296 -19.34998 -18.76388 -17.71806 -17.19321 -16.76280 -15.93488 -15.63808 -15.13398 -14.91611 -14.54364 -14.30665 -14.14963 -14.05268 -14.03012 -13.70785 -13.50109 -13.32802 -13.15380 -13.01092 -12.78963 -12.54898 -12.39651 -12.28834 -12.12744 -11.78587 -11.60377 -11.29557 -11.09329 -10.94734 -10.88101 -10.78801 -10.74911 -10.46572 -10.06015 -9.97689 -9.83698 -9.74939 -9.68212 -9.56514 -9.47382 -8.84800 -8.66957 -8.53043 -6.74381 -5.71078 -3.03003 1.62149 2.40102 2.57863 2.59797 2.99804 3.40906 3.46592 3.48710 4.21825 4.28070 4.51035 4.52347 4.65662 4.71783 4.84199 4.89256 4.92410 5.02030 5.08518 5.10222 5.23931 5.31499 5.35839 5.41733 5.46842 5.47084 5.49202 5.58759 5.70618 5.74228 5.74643 5.83289 5.91909 5.93419 5.98987 6.08166 6.20177 6.24167 6.34904 6.40601 6.48447 6.51850 6.64867 6.69230 6.82783 7.02496 7.05175 7.31888 7.47230 7.56565 7.64101 7.82671 8.12312 8.31304 9.23872 9.86435 10.55016 11.42054 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029253 B = 0.001764 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.946827 B =15869.842401 C =16203.345749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.265 4.265 4 C 0.089 3.911 5 C -0.060 4.060 6 C 0.518 3.482 7 O -0.529 6.529 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.131 4.131 11 C -0.074 4.074 12 C -0.093 4.093 13 H 0.068 0.932 14 C -0.140 4.140 15 C 0.173 3.827 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.143 3.857 26 C -0.127 4.127 27 C 0.113 3.887 28 N -0.262 5.262 29 N -0.476 5.476 30 H 0.436 0.564 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.252 0.748 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.184 -16.862 -10.806 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.294 4.294 4 C -0.079 4.079 5 C -0.102 4.102 6 C 0.305 3.695 7 O -0.405 6.405 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.112 4.112 13 H 0.086 0.914 14 C -0.179 4.179 15 C 0.048 3.952 16 N -0.330 5.330 17 C -0.356 4.356 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.017 3.983 26 C -0.165 4.165 27 C -0.009 4.009 28 N -0.084 5.084 29 N -0.185 5.185 30 H 0.280 0.720 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.107 0.893 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.487 -18.226 -10.309 29.295 hybrid contribution 0.090 1.092 -0.230 1.120 sum -20.397 -17.134 -10.540 28.647 Atomic orbital electron populations 1.20454 0.87272 1.03872 1.03489 1.21092 0.94581 0.87782 1.01267 1.21098 0.91353 0.99250 1.17739 1.21520 0.94488 0.91586 1.00266 1.20085 0.91933 0.99310 0.98862 1.20320 0.81096 0.81788 0.86324 1.90726 1.72309 1.30608 1.46881 1.48128 1.21123 1.36390 1.28937 1.21940 1.00793 0.87160 0.91878 1.22084 1.00013 0.96643 0.98162 1.21128 0.97829 0.95132 0.95155 1.22155 0.98143 0.94319 0.96542 0.91363 1.23066 0.97344 1.00302 0.97161 1.21411 0.99550 0.87289 0.86989 1.44492 1.36230 1.42465 1.09826 1.19019 1.13880 1.10120 0.92605 0.90741 1.24818 1.00759 0.99635 0.95310 1.69968 1.40635 1.45947 1.00017 0.86151 0.81609 0.80584 0.77707 1.21677 1.21655 1.20642 1.21305 0.90535 0.92828 0.93637 1.21961 1.01572 0.94706 0.98271 1.21614 0.93628 0.97758 0.87909 1.77407 0.95607 1.12443 1.22989 1.46333 1.04185 1.08187 1.59805 0.72047 0.90120 0.89498 0.91162 0.83480 0.87248 0.86818 0.91020 0.89848 0.91463 0.90060 0.90940 0.92482 0.92317 0.91604 0.95852 0.93788 0.96082 0.96512 0.91715 0.90370 0.89310 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.43 36.01 0.38 0.01 16 2 C 0.08 0.66 7.21 -82.26 -0.59 0.07 16 3 C -0.27 -2.49 10.64 -40.01 -0.43 -2.91 16 4 C 0.09 1.01 6.02 -82.41 -0.50 0.51 16 5 C -0.06 -0.55 4.62 -29.04 -0.13 -0.68 16 6 C 0.52 6.42 7.69 -10.99 -0.08 6.34 16 7 O -0.53 -8.77 14.97 5.55 0.08 -8.68 16 8 N -0.61 -6.69 2.97 -172.52 -0.51 -7.20 16 9 C 0.11 0.91 6.37 -3.49 -0.02 0.89 16 10 C -0.13 -1.37 5.22 -26.39 -0.14 -1.51 16 11 C -0.07 -0.93 1.53 -90.58 -0.14 -1.07 16 12 C -0.09 -1.52 2.48 -88.79 -0.22 -1.74 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.14 -2.56 5.51 -24.46 -0.13 -2.69 16 15 C 0.17 4.19 5.43 -2.42 -0.01 4.18 16 16 N -0.60 -15.47 3.40 -169.94 -0.58 -16.05 16 17 C -0.23 -6.39 10.24 -15.06 -0.15 -6.55 16 18 H 0.07 2.02 7.85 -52.49 -0.41 1.61 16 19 C -0.01 -0.25 5.40 -17.43 -0.09 -0.34 16 20 N -0.92 -27.23 10.68 55.49 0.59 -26.63 16 21 Si 0.91 22.14 29.56 -169.99 -5.03 17.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.14 2.88 5.88 -3.07 -0.02 2.87 16 26 C -0.13 -1.49 5.19 -26.63 -0.14 -1.63 16 27 C 0.11 1.30 6.43 -3.73 -0.02 1.28 16 28 N -0.26 -3.37 12.04 33.67 0.41 -2.97 16 29 N -0.48 -4.44 7.36 33.48 0.25 -4.20 16 30 H 0.44 2.69 8.96 -182.61 -1.64 1.05 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 0.78 7.93 -51.92 -0.41 0.37 16 36 H 0.11 0.74 7.68 -51.93 -0.40 0.34 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.86 7.27 -51.93 -0.38 0.49 16 41 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 44 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 45 H 0.02 0.62 8.07 -51.93 -0.42 0.20 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 47 H 0.02 0.42 7.67 -51.92 -0.40 0.02 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.92 7.27 -51.93 -0.38 0.54 16 51 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -36.48 405.04 -11.22 -47.70 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -10.09 Total: -2.19 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.45 Total: -3.00 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.16 Total: -57.05 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.48 -11.22 -47.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039117260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.381 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds