Wall clock time and date at job start Wed Apr 1 2020 03:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12885 * 2 1 4 4 C 1.39871 * 107.92353 * 180.14680 * 3 2 1 5 5 C 1.50692 * 125.90145 * 179.86900 * 4 3 2 6 6 C 1.50696 * 109.47450 * 124.71566 * 5 4 3 7 7 O 1.21286 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00074 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.62933 * 359.72359 * 8 6 5 10 10 C 1.53625 * 108.54100 * 126.36893 * 9 8 6 11 11 C 1.53035 * 109.24652 * 54.85290 * 10 9 8 12 12 C 1.52999 * 109.46120 * 178.48983 * 11 10 9 13 13 H 1.09000 * 110.64298 * 59.36795 * 12 11 10 14 14 C 1.55161 * 110.71966 * 182.50883 * 12 11 10 15 15 C 1.55123 * 101.48222 * 153.73504 * 14 12 11 16 16 N 1.47415 * 104.94597 * 323.22114 * 15 14 12 17 17 C 1.36942 * 125.65180 * 203.96938 * 16 15 14 18 18 H 1.07994 * 120.00308 * 169.98527 * 17 16 15 19 19 C 1.38811 * 119.99727 * 349.98748 * 17 16 15 20 20 N 1.31622 * 120.00198 * 350.42024 * 19 17 16 21 21 Si 1.86797 * 120.00044 * 170.42072 * 19 17 16 22 22 H 1.48498 * 109.47231 * 94.13865 * 21 19 17 23 23 H 1.48500 * 109.47315 * 214.13938 * 21 19 17 24 24 H 1.48497 * 109.47256 * 334.13955 * 21 19 17 25 25 C 1.47020 * 108.70229 * 24.00684 * 16 15 14 26 26 C 1.53042 * 109.54091 * 298.51028 * 11 10 9 27 27 C 1.46928 * 120.62813 * 179.97438 * 8 6 5 28 28 N 1.30840 * 108.20066 * 359.60348 * 4 3 2 29 29 N 1.34954 * 126.12734 * 179.71304 * 2 1 3 30 30 H 0.96995 * 126.03447 * 359.97438 * 29 2 1 31 31 H 1.09002 * 109.46838 * 270.26336 * 1 2 3 32 32 H 1.09001 * 109.47097 * 30.26535 * 1 2 3 33 33 H 1.09000 * 109.47225 * 150.26289 * 1 2 3 34 34 H 1.08001 * 126.03921 * 0.03588 * 3 2 1 35 35 H 1.09009 * 109.47124 * 244.71472 * 5 4 3 36 36 H 1.09005 * 109.47207 * 4.71239 * 5 4 3 37 37 H 1.09004 * 109.58231 * 246.19302 * 9 8 6 38 38 H 1.08999 * 109.58840 * 6.62237 * 9 8 6 39 39 H 1.09005 * 109.63506 * 294.86048 * 10 9 8 40 40 H 1.09003 * 109.45830 * 174.73993 * 10 9 8 41 41 H 1.08999 * 109.46200 * 58.52931 * 11 10 9 42 42 H 1.08998 * 111.00183 * 271.93713 * 14 12 11 43 43 H 1.08996 * 111.00719 * 35.79216 * 14 12 11 44 44 H 1.09004 * 110.41380 * 204.29060 * 15 14 12 45 45 H 1.09006 * 110.30437 * 82.09545 * 15 14 12 46 46 H 0.97000 * 120.00390 * 180.02562 * 20 19 17 47 47 H 1.09009 * 109.88032 * 239.51963 * 25 16 15 48 48 H 1.09001 * 110.01405 * 118.43207 * 25 16 15 49 49 H 1.09000 * 109.49475 * 301.42076 * 26 11 10 50 50 H 1.08993 * 109.52589 * 181.33050 * 26 11 10 51 51 H 1.09004 * 109.59117 * 353.37141 * 27 8 6 52 52 H 1.08997 * 109.58653 * 113.80531 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0074 6 6 5.7389 1.1793 1.1582 7 8 5.4101 0.2927 1.9178 8 7 6.8954 1.8423 1.3567 9 6 7.3100 2.9145 0.4417 10 6 7.6008 4.1766 1.2680 11 6 8.6281 3.8439 2.3524 12 6 8.9496 5.1065 3.1545 13 1 8.0485 5.5060 3.6198 14 6 10.0366 4.8162 4.2230 15 6 10.6772 6.2178 4.4005 16 7 10.6744 6.8108 3.0509 17 6 11.5166 7.7968 2.6106 18 1 11.5463 8.0531 1.5620 19 6 12.3321 8.4668 3.5123 20 7 12.1654 8.2920 4.8061 21 14 13.6661 9.6164 2.8894 22 1 13.1425 11.0053 2.8467 23 1 14.8367 9.5565 3.8012 24 1 14.0799 9.2013 1.5249 25 6 9.6171 6.1690 2.2562 26 6 8.0567 2.7768 3.2888 27 6 7.7681 1.5029 2.4889 28 7 3.6334 -0.6524 0.0032 29 7 2.3027 -1.0900 0.0055 30 1 2.0055 -2.0133 0.0104 31 1 -0.3633 0.0047 1.0277 32 1 -0.3633 0.8876 -0.5180 33 1 -0.3634 -0.8923 -0.5097 34 1 1.9741 2.1211 0.0005 35 1 5.4034 1.3962 -0.9381 36 1 4.5484 2.5822 0.0772 37 1 8.2091 2.6102 -0.0942 38 1 6.5094 3.1180 -0.2694 39 1 6.6808 4.5291 1.7343 40 1 7.9991 4.9538 0.6157 41 1 9.5391 3.4681 1.8866 42 1 9.5871 4.4683 5.1530 43 1 10.7676 4.0981 3.8516 44 1 11.6977 6.1251 4.7721 45 1 10.0797 6.8232 5.0822 46 1 12.7350 8.7605 5.4362 47 1 10.0517 5.6917 1.3777 48 1 8.8797 6.9104 1.9483 49 1 7.1323 3.1425 3.7359 50 1 8.7791 2.5572 4.0748 51 1 7.2697 0.7748 3.1290 52 1 8.7037 1.0857 2.1169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039117260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:11 Heat of formation + Delta-G solvation = 26.269889 kcal Electronic energy + Delta-G solvation = -30237.940152 eV Core-core repulsion = 26237.951181 eV Total energy + Delta-G solvation = -3999.988970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.22559 -41.12421 -39.68426 -37.85797 -35.19691 -34.39362 -33.45022 -32.54734 -32.03918 -31.01836 -29.64050 -29.03234 -27.80420 -26.80718 -25.06800 -24.20688 -22.49391 -21.84774 -21.52340 -21.04962 -20.65067 -19.59347 -18.79352 -18.40822 -17.99111 -16.85517 -16.73035 -16.54450 -16.13196 -15.82833 -15.68162 -15.14203 -14.95175 -14.70904 -14.55853 -14.51775 -14.28507 -14.06254 -13.96113 -13.80967 -13.52173 -13.41489 -13.39447 -13.18870 -13.04717 -12.77366 -12.75390 -12.69512 -12.42872 -12.17178 -12.09095 -11.98085 -11.78967 -11.57829 -11.48613 -11.30053 -11.11879 -11.04182 -10.76236 -10.62935 -10.22281 -9.56598 -9.49358 -8.81120 -7.85736 -5.19669 0.97060 1.46603 1.48181 1.57857 1.67210 1.72848 2.00618 2.21263 2.51626 3.33144 3.54802 3.65310 3.72183 3.76090 3.83792 3.91074 4.02600 4.18601 4.20537 4.25081 4.35455 4.45535 4.49629 4.51524 4.51793 4.54149 4.67315 4.75874 4.76899 4.78290 4.87885 4.89363 4.91283 4.95347 5.02075 5.05128 5.12433 5.14892 5.18123 5.24073 5.28306 5.34513 5.47717 5.49265 5.62675 5.65413 5.67388 5.72083 5.79165 6.24371 6.48144 6.48609 6.78794 7.11430 7.24516 7.81426 8.48330 9.26516 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029253 B = 0.001764 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.946827 B =15869.842401 C =16203.345749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.086 3.914 3 C -0.287 4.287 4 C 0.073 3.927 5 C -0.057 4.057 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.609 5.609 9 C 0.106 3.894 10 C -0.128 4.128 11 C -0.065 4.065 12 C -0.077 4.077 13 H 0.069 0.931 14 C -0.124 4.124 15 C 0.176 3.824 16 N -0.628 5.628 17 C -0.241 4.241 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.139 3.861 26 C -0.118 4.118 27 C 0.115 3.885 28 N -0.316 5.316 29 N -0.478 5.478 30 H 0.445 0.555 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.028 0.972 45 H -0.010 1.010 46 H 0.246 0.754 47 H 0.034 0.966 48 H 0.016 0.984 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.708 -17.066 -13.118 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.316 4.316 4 C -0.094 4.094 5 C -0.098 4.098 6 C 0.302 3.698 7 O -0.459 6.459 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.166 4.166 11 C -0.084 4.084 12 C -0.096 4.096 13 H 0.087 0.913 14 C -0.162 4.162 15 C 0.050 3.950 16 N -0.354 5.354 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.191 1.191 25 C 0.015 3.985 26 C -0.156 4.156 27 C -0.008 4.008 28 N -0.139 5.139 29 N -0.188 5.188 30 H 0.290 0.710 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.185 0.815 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.020 -18.432 -12.668 31.387 hybrid contribution 0.510 1.153 0.495 1.354 sum -21.511 -17.280 -12.172 30.158 Atomic orbital electron populations 1.20595 0.84291 1.05466 1.04408 1.21761 0.96334 0.87053 0.99109 1.21476 0.90875 1.00669 1.18551 1.21978 0.95997 0.91520 0.99867 1.20227 0.90942 1.00449 0.98136 1.20913 0.81337 0.80992 0.86553 1.90704 1.73474 1.32885 1.48864 1.48224 1.20589 1.36531 1.28852 1.22119 1.02585 0.85320 0.91528 1.22047 0.99214 0.97690 0.97627 1.21033 0.98759 0.93127 0.95433 1.22060 0.96978 0.94994 0.95545 0.91271 1.22912 0.97781 0.96510 0.99045 1.21222 0.97313 0.90255 0.86183 1.44844 1.37419 1.42366 1.10773 1.19442 1.14220 1.10396 0.93006 0.90151 1.25683 1.03155 1.01776 0.95531 1.70181 1.41514 1.47158 1.01132 0.85093 0.78452 0.78423 0.77541 1.21371 1.22126 1.19144 1.21507 0.89435 0.93463 0.94130 1.21855 1.01210 0.94463 0.98085 1.21520 0.93950 0.97135 0.88152 1.77311 0.97662 1.13701 1.25217 1.46398 1.03595 1.09180 1.59669 0.70982 0.89356 0.87990 0.89509 0.81486 0.85052 0.83809 0.89889 0.86610 0.91334 0.89732 0.90907 0.90396 0.91515 0.95380 0.99195 0.94443 0.94788 0.96578 0.92265 0.90349 0.91061 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.43 71.24 0.74 0.26 16 2 C 0.09 1.27 7.21 41.40 0.30 1.57 16 3 C -0.29 -4.89 10.64 21.99 0.23 -4.66 16 4 C 0.07 1.58 6.02 43.10 0.26 1.84 16 5 C -0.06 -0.90 4.62 29.10 0.13 -0.76 16 6 C 0.51 12.00 7.69 87.66 0.67 12.67 16 7 O -0.58 -19.31 14.97 -3.05 -0.05 -19.36 16 8 N -0.61 -11.94 2.97 -818.12 -2.43 -14.37 16 9 C 0.11 1.44 6.37 86.51 0.55 1.99 16 10 C -0.13 -2.25 5.22 30.82 0.16 -2.09 16 11 C -0.06 -1.47 1.53 -10.77 -0.02 -1.49 16 12 C -0.08 -2.39 2.48 -9.61 -0.02 -2.42 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.12 -4.43 5.51 32.06 0.18 -4.26 16 15 C 0.18 8.77 5.43 86.93 0.47 9.24 16 16 N -0.63 -32.45 3.40 -691.57 -2.35 -34.80 16 17 C -0.24 -13.65 10.24 84.03 0.86 -12.79 16 18 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 19 C -0.07 -3.95 5.40 84.86 0.46 -3.49 16 20 N -0.95 -58.28 10.68 21.65 0.23 -58.05 16 21 Si 0.98 46.02 29.56 68.60 2.03 48.04 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C 0.14 5.46 5.88 86.73 0.51 5.97 16 26 C -0.12 -2.55 5.19 30.66 0.16 -2.39 16 27 C 0.12 2.48 6.43 86.35 0.55 3.03 16 28 N -0.32 -8.09 12.04 -47.39 -0.57 -8.66 16 29 N -0.48 -8.68 7.36 -48.00 -0.35 -9.03 16 30 H 0.44 5.37 8.96 -213.33 -1.91 3.46 16 31 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.13 1.46 7.93 -2.38 -0.02 1.44 16 36 H 0.14 1.32 7.68 -2.38 -0.02 1.30 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.12 0.87 5.93 -2.39 -0.01 0.85 16 39 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 1.49 7.27 -2.39 -0.02 1.47 16 41 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 42 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 43 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 44 H 0.03 1.58 6.94 -2.39 -0.02 1.56 16 45 H -0.01 -0.55 8.07 -2.38 -0.02 -0.57 16 46 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.03 1.26 7.67 -2.38 -0.02 1.24 16 48 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.70 7.27 -2.39 -0.02 1.68 16 51 H 0.07 1.82 7.01 -2.38 -0.02 1.80 16 52 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -83.29 405.04 1.72 -81.57 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.00 Total: 12.43 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.21 Total: 2.22 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.47 Total: -124.91 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -83.29 1.72 -81.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039117260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.842 kcal (2) G-P(sol) polarization free energy of solvation -83.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds