Wall clock time and date at job start Wed Apr 1 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 126.13073 * 2 1 4 4 C 1.39871 * 107.92404 * 180.14541 * 3 2 1 5 5 C 1.50699 * 125.89628 * 179.86519 * 4 3 2 6 6 C 1.50706 * 109.46694 * 124.71659 * 5 4 3 7 7 O 1.21282 * 120.00278 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99522 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63297 * 1.98518 * 8 6 5 10 10 C 1.53190 * 108.77565 * 126.41533 * 9 8 6 11 11 C 1.53043 * 109.31192 * 54.63857 * 10 9 8 12 12 C 1.53049 * 109.53498 * 298.63463 * 11 10 9 13 13 C 1.46922 * 120.62834 * 182.01501 * 8 6 5 14 14 H 1.08999 * 109.59030 * 113.79613 * 13 8 6 15 15 C 1.53002 * 109.70500 * 353.44088 * 13 8 6 16 16 H 1.09003 * 110.63803 * 55.22494 * 15 13 8 17 17 C 1.55159 * 110.72116 * 178.55771 * 15 13 8 18 18 C 1.54907 * 101.58030 * 153.86167 * 17 15 13 19 19 N 1.47422 * 104.83579 * 322.99582 * 18 17 15 20 20 C 1.36940 * 125.65149 * 204.09296 * 19 18 17 21 21 H 1.07989 * 120.00411 * 180.02562 * 20 19 18 22 22 C 1.38820 * 119.99718 * 0.03644 * 20 19 18 23 23 N 1.31622 * 119.99649 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46914 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99730 * 24 22 20 27 27 H 1.48491 * 109.47395 * 240.00222 * 24 22 20 28 28 C 1.47019 * 108.70437 * 24.12562 * 19 18 17 29 29 N 1.30833 * 108.19825 * 359.59723 * 4 3 2 30 30 N 1.34945 * 126.12616 * 179.70375 * 2 1 3 31 31 H 0.97003 * 126.04053 * 0.02562 * 30 2 1 32 32 H 1.08993 * 109.47358 * 270.31745 * 1 2 3 33 33 H 1.09007 * 109.46926 * 30.32021 * 1 2 3 34 34 H 1.09007 * 109.47014 * 150.31213 * 1 2 3 35 35 H 1.08004 * 126.03480 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.47612 * 4.71219 * 5 4 3 37 37 H 1.09000 * 109.46767 * 244.71219 * 5 4 3 38 38 H 1.09005 * 109.58997 * 6.63366 * 9 8 6 39 39 H 1.08996 * 109.59243 * 246.20732 * 9 8 6 40 40 H 1.09002 * 109.50045 * 294.69265 * 10 9 8 41 41 H 1.08998 * 109.50395 * 174.58737 * 10 9 8 42 42 H 1.09001 * 109.46256 * 58.65543 * 11 10 9 43 43 H 1.09001 * 109.46539 * 178.61666 * 11 10 9 44 44 H 1.09005 * 109.49427 * 181.31087 * 12 11 10 45 45 H 1.08993 * 109.49686 * 301.41503 * 12 11 10 46 46 H 1.08995 * 111.00326 * 271.93931 * 17 15 13 47 47 H 1.09003 * 111.00084 * 35.79582 * 17 15 13 48 48 H 1.08996 * 110.37287 * 204.15150 * 18 17 15 49 49 H 1.09008 * 110.45906 * 81.88077 * 18 17 15 50 50 H 0.96999 * 119.99554 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.88391 * 239.52855 * 28 19 18 52 52 H 1.08999 * 110.01705 * 118.43202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 6 5.7389 1.1793 1.1583 7 8 5.4101 0.2928 1.9179 8 7 6.8948 1.8431 1.3573 9 6 7.2851 2.9489 0.4721 10 6 7.5856 4.1833 1.3281 11 6 8.6332 3.8239 2.3843 12 6 8.0838 2.7252 3.2971 13 6 7.7890 1.4743 2.4633 14 1 8.7204 1.0745 2.0625 15 6 7.1142 0.4193 3.3423 16 1 6.8104 -0.4408 2.7456 17 6 8.0536 -0.0142 4.4986 18 6 7.0350 -0.4779 5.5696 19 7 5.9039 0.4594 5.4456 20 6 5.0016 0.7565 6.4320 21 1 4.2046 1.4596 6.2409 22 6 5.1118 0.1540 7.6778 23 7 6.0838 -0.7024 7.9109 24 14 3.8816 0.5597 9.0236 25 1 2.8945 1.5440 8.5115 26 1 3.1752 -0.6789 9.4383 27 1 4.5965 1.1362 10.1904 28 6 5.9044 1.0219 4.0872 29 7 3.6334 -0.6524 0.0034 30 7 2.3026 -1.0900 0.0056 31 1 2.0055 -2.0134 0.0101 32 1 -0.3634 0.0057 1.0276 33 1 -0.3633 0.8872 -0.5188 34 1 -0.3633 -0.8928 -0.5090 35 1 1.9741 2.1211 0.0004 36 1 4.5484 2.5823 0.0771 37 1 5.4034 1.3962 -0.9381 38 1 6.4696 3.1713 -0.2161 39 1 8.1753 2.6693 -0.0912 40 1 6.6718 4.5157 1.8207 41 1 7.9685 4.9821 0.6930 42 1 9.5382 3.4681 1.8918 43 1 8.8670 4.7069 2.9791 44 1 8.8214 2.4861 4.0633 45 1 7.1653 3.0714 3.7709 46 1 8.6984 -0.8372 4.1904 47 1 8.6435 0.8284 4.8595 48 1 7.4745 -0.4125 6.5648 49 1 6.7067 -1.4975 5.3670 50 1 6.1606 -1.1236 8.7812 51 1 6.0013 2.1066 4.1352 52 1 4.9815 0.7547 3.5724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039197502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:21 Heat of formation + Delta-G solvation = 95.514738 kcal Electronic energy + Delta-G solvation = -32451.138414 eV Core-core repulsion = 28454.152126 eV Total energy + Delta-G solvation = -3996.986288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.27600 -40.45225 -37.33532 -36.68715 -33.61700 -32.80799 -32.64978 -31.54937 -30.81865 -28.84540 -28.64284 -27.00414 -26.85967 -25.03542 -24.14978 -22.97199 -21.31230 -20.63191 -20.33509 -19.89391 -19.12302 -18.12420 -17.34508 -16.87057 -16.24521 -15.62705 -15.31389 -14.99232 -14.88658 -14.42447 -14.36263 -14.08040 -13.81612 -13.76146 -13.53714 -13.32683 -13.02930 -12.91295 -12.87338 -12.68404 -12.49788 -12.16448 -11.93674 -11.63290 -11.52422 -11.47680 -11.11931 -10.91524 -10.76578 -10.68537 -10.60403 -10.46727 -10.32515 -9.92999 -9.81688 -9.64794 -9.44784 -9.28220 -9.25547 -8.61621 -8.52031 -8.34586 -8.10355 -6.49660 -5.44617 -2.82697 1.93948 2.71032 2.90160 2.99416 3.28225 3.49424 3.54217 3.57141 4.50906 4.56722 4.66214 4.70295 4.84347 4.89242 4.92652 5.04057 5.15837 5.22198 5.29239 5.34122 5.38103 5.40261 5.54361 5.60848 5.62326 5.68745 5.71137 5.75773 5.77522 5.92773 5.95205 5.98830 6.02199 6.12875 6.17628 6.22240 6.33152 6.51094 6.57184 6.64180 6.70559 6.81720 7.00091 7.09857 7.29640 7.33744 7.56626 7.70300 7.78088 7.79363 7.86098 8.08402 8.57336 8.67662 9.44990 10.07765 10.76287 11.59242 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.004496 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.658080 B = 6226.355163 C = 8835.822709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.266 4.266 4 C 0.090 3.910 5 C -0.058 4.058 6 C 0.496 3.504 7 O -0.478 6.478 8 N -0.612 5.612 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.118 4.118 12 C -0.140 4.140 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.092 4.092 16 H 0.102 0.898 17 C -0.150 4.150 18 C 0.158 3.842 19 N -0.605 5.605 20 C -0.207 4.207 21 H 0.073 0.927 22 C -0.018 4.018 23 N -0.925 5.925 24 Si 0.908 3.092 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.144 3.856 29 N -0.258 5.258 30 N -0.475 5.475 31 H 0.436 0.564 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.101 0.899 49 H 0.005 0.995 50 H 0.248 0.752 51 H 0.013 0.987 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 8.107 -22.095 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.296 4.296 4 C -0.078 4.078 5 C -0.100 4.100 6 C 0.283 3.717 7 O -0.351 6.351 8 N -0.348 5.348 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.156 4.156 12 C -0.178 4.178 13 C 0.061 3.939 14 H 0.083 0.917 15 C -0.111 4.111 16 H 0.120 0.880 17 C -0.189 4.189 18 C 0.033 3.967 19 N -0.331 5.331 20 C -0.336 4.336 21 H 0.091 0.909 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.740 3.260 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.019 3.981 29 N -0.080 5.080 30 N -0.183 5.183 31 H 0.279 0.721 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.023 0.977 50 H 0.058 0.942 51 H 0.030 0.970 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.136 6.537 -21.477 22.478 hybrid contribution -1.265 0.533 0.749 1.564 sum -2.401 7.070 -20.727 22.031 Atomic orbital electron populations 1.20441 0.87480 1.03560 1.03562 1.21046 0.94487 0.87854 1.01340 1.21044 0.91484 0.99039 1.17995 1.21489 0.94386 0.91611 1.00324 1.20087 0.92080 0.98858 0.98966 1.20251 0.81272 0.83829 0.86366 1.90832 1.71206 1.29924 1.43177 1.48029 1.21206 1.34369 1.31168 1.21681 1.00686 0.86700 0.92338 1.21921 1.00217 0.97053 0.98161 1.21524 0.97844 0.98989 0.97239 1.22185 1.02778 0.94814 0.98015 1.21208 0.91811 0.94935 0.85970 0.91712 1.22652 0.95436 0.97951 0.95054 0.87999 1.23222 0.98211 0.99610 0.97891 1.21802 0.86171 0.90857 0.97913 1.44568 1.31352 1.49155 1.08005 1.19120 1.04819 1.19589 0.90083 0.90946 1.24737 0.99082 0.99703 0.97730 1.69837 1.32937 1.32870 1.21847 0.86062 0.80394 0.77317 0.82226 1.20741 1.22011 1.21949 1.21879 0.96376 0.94324 0.85487 1.77405 0.95538 1.12376 1.22706 1.46314 1.04212 1.08145 1.59669 0.72091 0.90046 0.89712 0.91291 0.83769 0.87587 0.87887 0.90043 0.91664 0.91363 0.91159 0.92247 0.91973 0.90558 0.89974 0.93079 0.92478 0.88146 0.97657 0.94151 0.96965 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.43 36.00 0.38 -0.30 16 2 C 0.08 0.94 7.21 -82.27 -0.59 0.35 16 3 C -0.27 -3.36 10.64 -40.01 -0.43 -3.78 16 4 C 0.09 1.29 6.02 -82.41 -0.50 0.79 16 5 C -0.06 -0.68 4.64 -29.03 -0.13 -0.81 16 6 C 0.50 7.69 7.25 -10.98 -0.08 7.61 16 7 O -0.48 -9.76 8.53 5.56 0.05 -9.71 16 8 N -0.61 -8.22 2.95 -165.22 -0.49 -8.71 16 9 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16 10 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 11 C -0.12 -1.26 5.88 -26.68 -0.16 -1.42 16 12 C -0.14 -2.05 4.78 -26.61 -0.13 -2.17 16 13 C 0.16 2.53 2.77 -67.60 -0.19 2.34 16 14 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 15 C -0.09 -1.87 2.08 -88.78 -0.18 -2.05 16 16 H 0.10 2.30 5.99 -52.01 -0.31 1.99 16 17 C -0.15 -3.19 6.43 -24.58 -0.16 -3.35 16 18 C 0.16 4.27 5.89 -2.53 -0.01 4.26 16 19 N -0.61 -17.21 3.39 -170.07 -0.58 -17.79 16 20 C -0.21 -6.30 10.27 -15.05 -0.15 -6.45 16 21 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.02 -0.55 5.49 -17.43 -0.10 -0.64 16 23 N -0.92 -28.87 10.09 55.49 0.56 -28.31 16 24 Si 0.91 23.54 29.55 -169.99 -5.02 18.51 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 C 0.14 3.46 5.54 -3.07 -0.02 3.44 16 29 N -0.26 -4.19 12.04 33.67 0.41 -3.78 16 30 N -0.47 -6.17 7.36 33.47 0.25 -5.92 16 31 H 0.44 4.37 8.96 -182.60 -1.64 2.73 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.11 0.94 7.58 -51.93 -0.39 0.55 16 37 H 0.10 0.94 8.02 -51.93 -0.42 0.53 16 38 H 0.08 0.55 5.94 -51.93 -0.31 0.24 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.17 6.49 -51.93 -0.34 0.83 16 45 H 0.08 1.43 5.58 -51.93 -0.29 1.14 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.06 1.15 6.14 -51.93 -0.32 0.83 16 48 H 0.10 2.98 5.87 -51.93 -0.30 2.68 16 49 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.01 0.30 5.22 -51.92 -0.27 0.03 16 52 H 0.05 1.30 5.58 -52.21 -0.29 1.01 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -38.12 388.11 -11.12 -49.24 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.50 Total: 3.23 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.63 Total: -2.61 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: 0.15 Total: -64.51 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.05 Total: -9.71 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.12 -11.12 -49.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.754 kcal (2) G-P(sol) polarization free energy of solvation -38.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds