Wall clock time and date at job start Wed Apr 1 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 126.13073 * 2 1 4 4 C 1.39871 * 107.92404 * 180.14541 * 3 2 1 5 5 C 1.50699 * 125.89628 * 179.86519 * 4 3 2 6 6 C 1.50706 * 109.46694 * 124.71659 * 5 4 3 7 7 O 1.21282 * 120.00278 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99522 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63297 * 1.98518 * 8 6 5 10 10 C 1.53190 * 108.77565 * 126.41533 * 9 8 6 11 11 C 1.53043 * 109.31192 * 54.63857 * 10 9 8 12 12 C 1.53049 * 109.53498 * 298.63463 * 11 10 9 13 13 C 1.46922 * 120.62834 * 182.01501 * 8 6 5 14 14 H 1.08999 * 109.59030 * 113.79613 * 13 8 6 15 15 C 1.53002 * 109.70500 * 353.44088 * 13 8 6 16 16 H 1.09003 * 110.63803 * 55.22494 * 15 13 8 17 17 C 1.55159 * 110.72116 * 178.55771 * 15 13 8 18 18 C 1.54907 * 101.58030 * 153.86167 * 17 15 13 19 19 N 1.47422 * 104.83579 * 322.99582 * 18 17 15 20 20 C 1.36940 * 125.65149 * 204.09296 * 19 18 17 21 21 H 1.07989 * 120.00411 * 180.02562 * 20 19 18 22 22 C 1.38820 * 119.99718 * 0.03644 * 20 19 18 23 23 N 1.31622 * 119.99649 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46914 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99730 * 24 22 20 27 27 H 1.48491 * 109.47395 * 240.00222 * 24 22 20 28 28 C 1.47019 * 108.70437 * 24.12562 * 19 18 17 29 29 N 1.30833 * 108.19825 * 359.59723 * 4 3 2 30 30 N 1.34945 * 126.12616 * 179.70375 * 2 1 3 31 31 H 0.97003 * 126.04053 * 0.02562 * 30 2 1 32 32 H 1.08993 * 109.47358 * 270.31745 * 1 2 3 33 33 H 1.09007 * 109.46926 * 30.32021 * 1 2 3 34 34 H 1.09007 * 109.47014 * 150.31213 * 1 2 3 35 35 H 1.08004 * 126.03480 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.47612 * 4.71219 * 5 4 3 37 37 H 1.09000 * 109.46767 * 244.71219 * 5 4 3 38 38 H 1.09005 * 109.58997 * 6.63366 * 9 8 6 39 39 H 1.08996 * 109.59243 * 246.20732 * 9 8 6 40 40 H 1.09002 * 109.50045 * 294.69265 * 10 9 8 41 41 H 1.08998 * 109.50395 * 174.58737 * 10 9 8 42 42 H 1.09001 * 109.46256 * 58.65543 * 11 10 9 43 43 H 1.09001 * 109.46539 * 178.61666 * 11 10 9 44 44 H 1.09005 * 109.49427 * 181.31087 * 12 11 10 45 45 H 1.08993 * 109.49686 * 301.41503 * 12 11 10 46 46 H 1.08995 * 111.00326 * 271.93931 * 17 15 13 47 47 H 1.09003 * 111.00084 * 35.79582 * 17 15 13 48 48 H 1.08996 * 110.37287 * 204.15150 * 18 17 15 49 49 H 1.09008 * 110.45906 * 81.88077 * 18 17 15 50 50 H 0.96999 * 119.99554 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.88391 * 239.52855 * 28 19 18 52 52 H 1.08999 * 110.01705 * 118.43202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 6 5.7389 1.1793 1.1583 7 8 5.4101 0.2928 1.9179 8 7 6.8948 1.8431 1.3573 9 6 7.2851 2.9489 0.4721 10 6 7.5856 4.1833 1.3281 11 6 8.6332 3.8239 2.3843 12 6 8.0838 2.7252 3.2971 13 6 7.7890 1.4743 2.4633 14 1 8.7204 1.0745 2.0625 15 6 7.1142 0.4193 3.3423 16 1 6.8104 -0.4408 2.7456 17 6 8.0536 -0.0142 4.4986 18 6 7.0350 -0.4779 5.5696 19 7 5.9039 0.4594 5.4456 20 6 5.0016 0.7565 6.4320 21 1 4.2046 1.4596 6.2409 22 6 5.1118 0.1540 7.6778 23 7 6.0838 -0.7024 7.9109 24 14 3.8816 0.5597 9.0236 25 1 2.8945 1.5440 8.5115 26 1 3.1752 -0.6789 9.4383 27 1 4.5965 1.1362 10.1904 28 6 5.9044 1.0219 4.0872 29 7 3.6334 -0.6524 0.0034 30 7 2.3026 -1.0900 0.0056 31 1 2.0055 -2.0134 0.0101 32 1 -0.3634 0.0057 1.0276 33 1 -0.3633 0.8872 -0.5188 34 1 -0.3633 -0.8928 -0.5090 35 1 1.9741 2.1211 0.0004 36 1 4.5484 2.5823 0.0771 37 1 5.4034 1.3962 -0.9381 38 1 6.4696 3.1713 -0.2161 39 1 8.1753 2.6693 -0.0912 40 1 6.6718 4.5157 1.8207 41 1 7.9685 4.9821 0.6930 42 1 9.5382 3.4681 1.8918 43 1 8.8670 4.7069 2.9791 44 1 8.8214 2.4861 4.0633 45 1 7.1653 3.0714 3.7709 46 1 8.6984 -0.8372 4.1904 47 1 8.6435 0.8284 4.8595 48 1 7.4745 -0.4125 6.5648 49 1 6.7067 -1.4975 5.3670 50 1 6.1606 -1.1236 8.7812 51 1 6.0013 2.1066 4.1352 52 1 4.9815 0.7547 3.5724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039197502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:20 Heat of formation + Delta-G solvation = 69.388247 kcal Electronic energy + Delta-G solvation = -32452.271344 eV Core-core repulsion = 28454.152126 eV Total energy + Delta-G solvation = -3998.119218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.27114 -41.64314 -38.83574 -38.08373 -35.12155 -34.19427 -33.68188 -32.65422 -32.27618 -30.75145 -29.62147 -28.55307 -27.80721 -26.82144 -25.45603 -24.32405 -22.45192 -22.06619 -21.52947 -21.36516 -20.38070 -19.34985 -18.90444 -18.26293 -17.50831 -17.01207 -16.81522 -16.41398 -16.26242 -15.83110 -15.64839 -15.19665 -15.02830 -14.71101 -14.64760 -14.50231 -14.27269 -14.10960 -13.84804 -13.68848 -13.52839 -13.49575 -13.39806 -13.10785 -13.01955 -12.86921 -12.77484 -12.69205 -12.23683 -12.00472 -11.99181 -11.86583 -11.59488 -11.49111 -11.45391 -11.31923 -11.26644 -11.09128 -10.73868 -10.28849 -9.81872 -9.47049 -9.33160 -8.74958 -7.77050 -5.20054 0.99963 1.39180 1.42365 1.52617 1.72973 1.86844 2.02843 2.27219 2.47958 3.29976 3.57372 3.65396 3.79238 3.88185 3.94971 4.00197 4.11574 4.14634 4.21405 4.25173 4.36061 4.36671 4.44961 4.45674 4.53051 4.64176 4.74051 4.74534 4.76677 4.81100 4.86893 4.88017 4.94323 5.05020 5.07631 5.08959 5.18871 5.21924 5.28107 5.30529 5.33993 5.38966 5.41263 5.59580 5.65067 5.71399 5.74338 5.78590 5.89356 6.30383 6.48858 6.65284 6.81826 7.11304 7.50759 7.81849 8.48752 9.25223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.004496 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.658080 B = 6226.355163 C = 8835.822709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.083 3.917 3 C -0.288 4.288 4 C 0.076 3.924 5 C -0.050 4.050 6 C 0.488 3.512 7 O -0.539 6.539 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.169 3.831 14 H 0.087 0.913 15 C -0.074 4.074 16 H 0.078 0.922 17 C -0.136 4.136 18 C 0.161 3.839 19 N -0.627 5.627 20 C -0.234 4.234 21 H 0.070 0.930 22 C -0.072 4.072 23 N -0.952 5.952 24 Si 0.982 3.018 25 H -0.269 1.269 26 H -0.292 1.292 27 H -0.284 1.284 28 C 0.153 3.847 29 N -0.313 5.313 30 N -0.481 5.481 31 H 0.443 0.557 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.072 0.928 49 H -0.035 1.035 50 H 0.246 0.754 51 H 0.017 0.983 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 10.923 -24.490 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.317 4.317 4 C -0.091 4.091 5 C -0.092 4.092 6 C 0.277 3.723 7 O -0.417 6.417 8 N -0.343 5.343 9 C -0.019 4.019 10 C -0.170 4.170 11 C -0.150 4.150 12 C -0.173 4.173 13 C 0.066 3.934 14 H 0.105 0.895 15 C -0.093 4.093 16 H 0.096 0.904 17 C -0.174 4.174 18 C 0.036 3.964 19 N -0.353 5.353 20 C -0.364 4.364 21 H 0.088 0.912 22 C -0.264 4.264 23 N -0.602 5.602 24 Si 0.809 3.191 25 H -0.193 1.193 26 H -0.219 1.219 27 H -0.210 1.210 28 C 0.029 3.971 29 N -0.137 5.137 30 N -0.191 5.191 31 H 0.287 0.713 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.185 0.815 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.090 0.910 49 H -0.017 1.017 50 H 0.056 0.944 51 H 0.034 0.966 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.995 9.399 -23.925 25.724 hybrid contribution -1.351 -0.372 1.478 2.036 sum -2.346 9.028 -22.447 24.308 Atomic orbital electron populations 1.20581 0.84436 1.05576 1.04086 1.21763 0.96339 0.87163 0.99328 1.21466 0.91065 1.00506 1.18672 1.22035 0.96075 0.91477 0.99550 1.20210 0.90770 0.99915 0.98261 1.20995 0.81770 0.82837 0.86691 1.90816 1.72597 1.32658 1.45616 1.48150 1.20197 1.35128 1.30825 1.22097 1.02910 0.84902 0.91994 1.21928 0.99105 0.97943 0.97975 1.21509 0.98934 0.97501 0.97100 1.22085 1.00990 0.95789 0.98430 1.21024 0.92244 0.93892 0.86274 0.89499 1.22387 0.93569 0.98689 0.94680 0.90385 1.23080 0.97233 1.00717 0.96410 1.21596 0.87294 0.89091 0.98459 1.44930 1.31476 1.49385 1.09494 1.19449 1.05574 1.20114 0.91244 0.91220 1.25666 1.01179 0.99540 0.99989 1.70100 1.34418 1.33517 1.22178 0.84957 0.78077 0.77179 0.78840 1.19329 1.21917 1.21031 1.21893 0.97204 0.94401 0.83587 1.77312 0.97465 1.13854 1.25029 1.46401 1.03798 1.09098 1.59807 0.71265 0.90052 0.87594 0.89431 0.81493 0.84331 0.84873 0.87072 0.89259 0.92849 0.87654 0.90268 0.91408 0.91648 0.93386 0.90866 0.91033 0.91004 1.01675 0.94432 0.96570 0.95908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.43 71.23 0.74 -0.40 16 2 C 0.08 1.87 7.21 41.40 0.30 2.17 16 3 C -0.29 -7.00 10.64 21.99 0.23 -6.77 16 4 C 0.08 2.16 6.02 43.10 0.26 2.42 16 5 C -0.05 -1.08 4.64 29.10 0.13 -0.94 16 6 C 0.49 14.87 7.25 87.66 0.64 15.51 16 7 O -0.54 -23.00 8.53 -3.04 -0.03 -23.03 16 8 N -0.61 -15.11 2.95 -795.03 -2.35 -17.46 16 9 C 0.10 1.38 6.34 86.36 0.55 1.92 16 10 C -0.13 -1.80 6.08 30.67 0.19 -1.62 16 11 C -0.11 -2.03 5.88 30.63 0.18 -1.85 16 12 C -0.13 -3.78 4.78 30.67 0.15 -3.63 16 13 C 0.17 5.04 2.77 44.98 0.12 5.16 16 14 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.07 -3.10 2.08 -9.60 -0.02 -3.12 16 16 H 0.08 3.70 5.99 -4.78 -0.03 3.67 16 17 C -0.14 -5.92 6.43 31.99 0.21 -5.71 16 18 C 0.16 9.27 5.89 86.85 0.51 9.78 16 19 N -0.63 -37.70 3.39 -691.99 -2.35 -40.05 16 20 C -0.23 -14.90 10.27 84.03 0.86 -14.04 16 21 H 0.07 4.33 7.83 -2.92 -0.02 4.30 16 22 C -0.07 -4.49 5.49 84.86 0.47 -4.03 16 23 N -0.95 -61.94 10.09 21.65 0.22 -61.72 16 24 Si 0.98 49.60 29.55 68.60 2.03 51.62 16 25 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 28 C 0.15 7.74 5.54 86.73 0.48 8.22 16 29 N -0.31 -10.51 12.04 -47.39 -0.57 -11.08 16 30 N -0.48 -12.86 7.36 -48.01 -0.35 -13.21 16 31 H 0.44 9.36 8.96 -213.32 -1.91 7.45 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.14 1.98 7.58 -2.39 -0.02 1.96 16 37 H 0.13 2.00 8.02 -2.39 -0.02 1.98 16 38 H 0.11 0.88 5.94 -2.38 -0.01 0.87 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.95 6.49 -2.38 -0.02 1.93 16 45 H 0.05 1.68 5.58 -2.39 -0.01 1.66 16 46 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 47 H 0.07 2.91 6.14 -2.39 -0.01 2.90 16 48 H 0.07 4.54 5.87 -2.39 -0.01 4.52 16 49 H -0.03 -2.21 8.14 -2.38 -0.02 -2.23 16 50 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.02 0.82 5.22 -2.38 -0.01 0.81 16 52 H 0.02 1.32 5.58 -7.86 -0.04 1.27 16 Total: -1.00 -91.35 388.11 1.58 -89.77 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -1.02 Total: 22.09 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.00 Total: 3.07 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -5.40 Total: -143.52 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.03 Total: -23.03 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.62 kcal Total: -91.35 1.58 -89.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.159 kcal (2) G-P(sol) polarization free energy of solvation -91.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds