Wall clock time and date at job start Wed Apr 1 2020 04:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33324 * 126.10523 * 2 1 4 4 C 1.30857 * 109.68412 * 180.02562 * 3 2 1 5 5 N 1.34491 * 109.16380 * 0.02562 * 4 3 2 6 6 C 1.46505 * 126.47052 * 180.02562 * 5 4 3 7 7 C 1.36657 * 126.10806 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84866 * 359.97438 * 7 2 1 9 9 O 1.21675 * 120.00244 * 87.40125 * 8 7 2 10 10 N 1.34774 * 119.99640 * 267.40489 * 8 7 2 11 11 C 1.46927 * 120.63539 * 5.15224 * 10 8 7 12 12 C 1.53623 * 108.54087 * 126.36718 * 11 10 8 13 13 C 1.53040 * 109.24296 * 54.86144 * 12 11 10 14 14 C 1.53005 * 109.44731 * 178.49692 * 13 12 11 15 15 H 1.08997 * 110.89178 * 60.76166 * 14 13 12 16 16 C 1.55157 * 111.00069 * 296.87562 * 14 13 12 17 17 C 1.54374 * 102.91777 * 206.45462 * 16 14 13 18 18 N 1.47022 * 107.28845 * 22.14364 * 17 16 14 19 19 C 1.36942 * 125.64634 * 181.05628 * 18 17 16 20 20 H 1.08001 * 119.99514 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99843 * 0.03485 * 19 18 17 22 22 N 1.31612 * 120.00430 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99742 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47083 * 60.00381 * 23 21 19 25 25 H 1.48499 * 109.47283 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47179 * 300.00330 * 23 21 19 27 27 C 1.47418 * 108.70124 * 1.09024 * 18 17 16 28 28 C 1.53040 * 109.53520 * 298.50691 * 13 12 11 29 29 C 1.46932 * 120.62838 * 185.43033 * 10 8 7 30 30 H 1.08996 * 109.47371 * 90.02586 * 1 2 3 31 31 H 1.09001 * 109.47112 * 210.02301 * 1 2 3 32 32 H 1.08996 * 109.47336 * 330.01891 * 1 2 3 33 33 H 1.07998 * 125.41485 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46835 * 85.10918 * 6 5 4 35 35 H 1.08997 * 109.46808 * 205.10885 * 6 5 4 36 36 H 1.08989 * 109.47061 * 325.11071 * 6 5 4 37 37 H 1.08999 * 109.58857 * 246.20074 * 11 10 8 38 38 H 1.08999 * 109.58249 * 6.63040 * 11 10 8 39 39 H 1.09004 * 109.63824 * 294.86143 * 12 11 10 40 40 H 1.09005 * 109.45971 * 174.74393 * 12 11 10 41 41 H 1.08997 * 109.46263 * 58.52927 * 13 12 11 42 42 H 1.08992 * 110.72465 * 324.78924 * 16 14 13 43 43 H 1.08998 * 110.71815 * 88.06613 * 16 14 13 44 44 H 1.09000 * 109.84831 * 262.73497 * 17 16 14 45 45 H 1.09005 * 110.02928 * 141.65551 * 17 16 14 46 46 H 0.96999 * 120.00303 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.36704 * 217.03147 * 27 18 17 48 48 H 1.09003 * 110.36683 * 94.71427 * 27 18 17 49 49 H 1.09001 * 109.49748 * 301.41361 * 28 13 12 50 50 H 1.09004 * 109.49838 * 181.31911 * 28 13 12 51 51 H 1.09000 * 109.58698 * 353.37950 * 29 10 8 52 52 H 1.08997 * 109.58382 * 113.65641 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6121 -0.6361 -0.0015 6 6 4.8306 -1.4496 -0.0018 7 6 2.3123 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0006 9 8 1.6577 -3.0748 -1.0532 10 7 1.7356 -3.1672 1.1654 11 6 1.8928 -2.4665 2.4472 12 6 0.6366 -2.7134 3.2962 13 6 0.4054 -4.2204 3.4285 14 6 -0.8234 -4.4724 4.3046 15 1 -1.7149 -4.0298 3.8603 16 6 -0.5977 -3.9415 5.7450 17 6 -1.5312 -4.8331 6.5916 18 7 -1.7769 -6.0621 5.8231 19 6 -2.5734 -7.1040 6.2172 20 1 -2.6893 -7.9669 5.5781 21 6 -3.2318 -7.0510 7.4381 22 7 -3.0911 -5.9993 8.2166 23 14 -4.3177 -8.4726 7.9760 24 1 -3.5045 -9.7123 8.0606 25 1 -4.9030 -8.1722 9.3073 26 1 -5.4095 -8.6632 6.9874 27 6 -1.0232 -5.9874 4.5583 28 6 0.1761 -4.8266 2.0421 29 6 1.4215 -4.6025 1.1788 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8901 0.5135 33 1 4.3969 1.3746 -0.0011 34 1 5.1812 -1.5792 1.0221 35 1 4.6161 -2.4249 -0.4386 36 1 5.6009 -0.9499 -0.5891 37 1 2.7703 -2.8497 2.9679 38 1 2.0098 -1.3978 2.2673 39 1 -0.2268 -2.2536 2.8152 40 1 0.7760 -2.2785 4.2860 41 1 1.2794 -4.6830 3.8871 42 1 0.4410 -4.0751 6.0469 43 1 -0.8907 -2.8944 5.8203 44 1 -2.4728 -4.3152 6.7735 45 1 -1.0538 -5.0783 7.5404 46 1 -3.5515 -5.9621 9.0695 47 1 -1.5975 -6.4353 3.7474 48 1 -0.0589 -6.4853 4.6614 49 1 -0.6830 -4.3471 1.5729 50 1 -0.0117 -5.8960 2.1391 51 1 1.2275 -4.9436 0.1619 52 1 2.2624 -5.1566 1.5959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039205284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:14 Heat of formation + Delta-G solvation = 45.967096 kcal Electronic energy + Delta-G solvation = -31385.257056 eV Core-core repulsion = 27386.122221 eV Total energy + Delta-G solvation = -3999.134835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58470 -40.16570 -38.39001 -36.64918 -34.82981 -33.80471 -32.16185 -31.57241 -31.03758 -29.21332 -28.79165 -27.70640 -26.44111 -25.31524 -24.15011 -23.36208 -22.53316 -21.02534 -20.62794 -19.87970 -19.53625 -19.13457 -17.86014 -16.92693 -16.80474 -16.06080 -15.91131 -15.60803 -14.94150 -14.67144 -14.42656 -14.31927 -14.25021 -13.92660 -13.77732 -13.65894 -13.38317 -13.14590 -12.98286 -12.82733 -12.63879 -12.47808 -12.38955 -12.23088 -12.02756 -11.73707 -11.40111 -11.07621 -11.04894 -10.85727 -10.75585 -10.67569 -10.55285 -10.13636 -10.11398 -9.95667 -9.84338 -9.80390 -9.70453 -9.58215 -8.87988 -8.67208 -8.57141 -6.79263 -5.68470 -3.01553 1.38165 1.84484 2.45645 2.67432 2.88502 3.41584 3.45731 3.47014 4.08128 4.17854 4.25386 4.51164 4.59171 4.62520 4.67672 4.77382 4.80959 4.87119 4.95926 4.97798 5.11121 5.25025 5.34948 5.49426 5.50525 5.54304 5.56036 5.60415 5.63545 5.66637 5.71353 5.78698 5.81941 5.89702 5.98233 5.98785 6.11774 6.16622 6.27405 6.33368 6.37507 6.45383 6.58337 6.62297 6.70963 6.78356 7.01555 7.04791 7.59011 7.64784 7.67007 7.78257 7.85847 8.29903 9.25512 9.86288 10.52913 11.43195 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002193 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.466537 B =12763.757687 C =13079.291021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.490 5.490 4 C 0.199 3.801 5 N -0.440 5.440 6 C 0.069 3.931 7 C -0.073 4.073 8 C 0.597 3.403 9 O -0.528 6.528 10 N -0.596 5.596 11 C 0.109 3.891 12 C -0.127 4.127 13 C -0.073 4.073 14 C -0.096 4.096 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.143 3.857 28 C -0.129 4.129 29 C 0.111 3.889 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.211 0.789 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.252 0.748 47 H 0.035 0.965 48 H 0.016 0.984 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.092 0.908 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.386 12.205 -15.474 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.209 5.209 4 C -0.083 4.083 5 N -0.124 5.124 6 C -0.073 4.073 7 C -0.190 4.190 8 C 0.382 3.618 9 O -0.404 6.404 10 N -0.329 5.329 11 C -0.014 4.014 12 C -0.165 4.165 13 C -0.092 4.092 14 C -0.115 4.115 15 H 0.090 0.910 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.016 3.984 28 C -0.167 4.167 29 C -0.011 4.011 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.033 0.967 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.110 0.890 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.998 12.515 -15.836 26.388 hybrid contribution -0.074 -1.475 0.484 1.554 sum 16.924 11.040 -15.352 25.376 Atomic orbital electron populations 1.20154 0.86966 1.03185 1.02939 1.20870 0.96467 0.86720 1.03356 1.70031 1.00345 1.30066 1.20420 1.24998 0.97251 0.81531 1.04473 1.45281 1.05773 1.07764 1.53554 1.22154 0.84659 0.96424 1.04078 1.20608 0.84876 0.95005 1.18479 1.16951 0.77663 0.83448 0.83711 1.90838 1.50650 1.67722 1.31144 1.48149 1.68806 1.10333 1.05660 1.21896 0.98882 0.97229 0.83371 1.22040 0.97048 0.97335 1.00056 1.21102 0.98875 0.94398 0.94847 1.22349 0.96278 0.98015 0.94901 0.90970 1.22902 1.00051 0.99235 0.95422 1.21133 0.95800 0.85393 0.92444 1.44484 1.53829 1.18433 1.16583 1.19016 1.19670 0.95668 1.01229 0.90603 1.24795 1.00681 0.97957 0.97126 1.69958 1.46664 1.28530 1.11925 0.86213 0.80382 0.81578 0.77672 1.21217 1.21625 1.21192 1.21550 0.94565 0.92696 0.89549 1.21990 0.97156 1.02311 0.95256 1.21754 0.97955 0.79146 1.02207 0.90715 0.91196 0.90329 0.77225 0.89849 0.89566 0.88825 0.91315 0.90005 0.91310 0.90143 0.91052 0.92728 0.92489 0.93850 0.94222 0.93777 0.94669 0.96677 0.91348 0.89943 0.88968 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.24 36.00 0.37 -0.40 16 2 C 0.06 0.69 6.96 -82.52 -0.57 0.11 16 3 N -0.49 -5.60 11.20 -10.65 -0.12 -5.72 16 4 C 0.20 1.62 12.52 -90.58 -1.13 0.49 16 5 N -0.44 -3.67 3.17 -121.98 -0.39 -4.05 16 6 C 0.07 0.32 11.07 59.85 0.66 0.98 16 7 C -0.07 -0.82 4.71 -82.14 -0.39 -1.21 16 8 C 0.60 7.34 6.61 -12.81 -0.08 7.25 16 9 O -0.53 -8.25 16.53 5.21 0.09 -8.16 16 10 N -0.60 -6.26 2.97 -174.01 -0.52 -6.78 16 11 C 0.11 1.00 6.34 -3.49 -0.02 0.97 16 12 C -0.13 -1.32 5.21 -26.39 -0.14 -1.45 16 13 C -0.07 -0.88 1.65 -90.58 -0.15 -1.03 16 14 C -0.10 -1.55 2.56 -88.47 -0.23 -1.78 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -2.44 5.42 -24.87 -0.13 -2.58 16 17 C 0.18 4.28 5.38 -3.04 -0.02 4.26 16 18 N -0.61 -15.50 3.39 -170.04 -0.58 -16.08 16 19 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.14 2.85 5.80 -2.53 -0.01 2.83 16 28 C -0.13 -1.46 5.21 -26.62 -0.14 -1.60 16 29 C 0.11 1.15 6.44 -3.71 -0.02 1.12 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.50 7.80 -51.93 -0.40 0.09 16 36 H 0.09 0.19 8.14 -51.94 -0.42 -0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.77 6.24 -51.93 -0.32 0.44 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.82 7.32 -51.93 -0.38 0.44 16 41 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 42 H 0.05 0.90 8.04 -51.93 -0.42 0.49 16 43 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 44 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 45 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.04 0.69 8.03 -51.93 -0.42 0.28 16 48 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.95 7.32 -51.93 -0.38 0.57 16 51 H 0.09 1.04 6.99 -51.93 -0.36 0.68 16 52 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 406.61 15.07 6.13 6.13 Total: -1.00 -35.15 406.61 -11.01 -46.16 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.90 Total: -3.02 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.26 Total: 1.08 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -1.03 Total: -59.40 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.15 -11.01 -46.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039205284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.123 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds