Wall clock time and date at job start Wed Apr 1 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33324 * 126.10523 * 2 1 4 4 C 1.30857 * 109.68412 * 180.02562 * 3 2 1 5 5 N 1.34491 * 109.16380 * 0.02562 * 4 3 2 6 6 C 1.46505 * 126.47052 * 180.02562 * 5 4 3 7 7 C 1.36657 * 126.10806 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84866 * 359.97438 * 7 2 1 9 9 O 1.21675 * 120.00244 * 87.40125 * 8 7 2 10 10 N 1.34774 * 119.99640 * 267.40489 * 8 7 2 11 11 C 1.46927 * 120.63539 * 5.15224 * 10 8 7 12 12 C 1.53623 * 108.54087 * 126.36718 * 11 10 8 13 13 C 1.53040 * 109.24296 * 54.86144 * 12 11 10 14 14 C 1.53005 * 109.44731 * 178.49692 * 13 12 11 15 15 H 1.08997 * 110.89178 * 60.76166 * 14 13 12 16 16 C 1.55157 * 111.00069 * 296.87562 * 14 13 12 17 17 C 1.54374 * 102.91777 * 206.45462 * 16 14 13 18 18 N 1.47022 * 107.28845 * 22.14364 * 17 16 14 19 19 C 1.36942 * 125.64634 * 181.05628 * 18 17 16 20 20 H 1.08001 * 119.99514 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99843 * 0.03485 * 19 18 17 22 22 N 1.31612 * 120.00430 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99742 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47083 * 60.00381 * 23 21 19 25 25 H 1.48499 * 109.47283 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47179 * 300.00330 * 23 21 19 27 27 C 1.47418 * 108.70124 * 1.09024 * 18 17 16 28 28 C 1.53040 * 109.53520 * 298.50691 * 13 12 11 29 29 C 1.46932 * 120.62838 * 185.43033 * 10 8 7 30 30 H 1.08996 * 109.47371 * 90.02586 * 1 2 3 31 31 H 1.09001 * 109.47112 * 210.02301 * 1 2 3 32 32 H 1.08996 * 109.47336 * 330.01891 * 1 2 3 33 33 H 1.07998 * 125.41485 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46835 * 85.10918 * 6 5 4 35 35 H 1.08997 * 109.46808 * 205.10885 * 6 5 4 36 36 H 1.08989 * 109.47061 * 325.11071 * 6 5 4 37 37 H 1.08999 * 109.58857 * 246.20074 * 11 10 8 38 38 H 1.08999 * 109.58249 * 6.63040 * 11 10 8 39 39 H 1.09004 * 109.63824 * 294.86143 * 12 11 10 40 40 H 1.09005 * 109.45971 * 174.74393 * 12 11 10 41 41 H 1.08997 * 109.46263 * 58.52927 * 13 12 11 42 42 H 1.08992 * 110.72465 * 324.78924 * 16 14 13 43 43 H 1.08998 * 110.71815 * 88.06613 * 16 14 13 44 44 H 1.09000 * 109.84831 * 262.73497 * 17 16 14 45 45 H 1.09005 * 110.02928 * 141.65551 * 17 16 14 46 46 H 0.96999 * 120.00303 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.36704 * 217.03147 * 27 18 17 48 48 H 1.09003 * 110.36683 * 94.71427 * 27 18 17 49 49 H 1.09001 * 109.49748 * 301.41361 * 28 13 12 50 50 H 1.09004 * 109.49838 * 181.31911 * 28 13 12 51 51 H 1.09000 * 109.58698 * 353.37950 * 29 10 8 52 52 H 1.08997 * 109.58382 * 113.65641 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6121 -0.6361 -0.0015 6 6 4.8306 -1.4496 -0.0018 7 6 2.3123 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0006 9 8 1.6577 -3.0748 -1.0532 10 7 1.7356 -3.1672 1.1654 11 6 1.8928 -2.4665 2.4472 12 6 0.6366 -2.7134 3.2962 13 6 0.4054 -4.2204 3.4285 14 6 -0.8234 -4.4724 4.3046 15 1 -1.7149 -4.0298 3.8603 16 6 -0.5977 -3.9415 5.7450 17 6 -1.5312 -4.8331 6.5916 18 7 -1.7769 -6.0621 5.8231 19 6 -2.5734 -7.1040 6.2172 20 1 -2.6893 -7.9669 5.5781 21 6 -3.2318 -7.0510 7.4381 22 7 -3.0911 -5.9993 8.2166 23 14 -4.3177 -8.4726 7.9760 24 1 -3.5045 -9.7123 8.0606 25 1 -4.9030 -8.1722 9.3073 26 1 -5.4095 -8.6632 6.9874 27 6 -1.0232 -5.9874 4.5583 28 6 0.1761 -4.8266 2.0421 29 6 1.4215 -4.6025 1.1788 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8901 0.5135 33 1 4.3969 1.3746 -0.0011 34 1 5.1812 -1.5792 1.0221 35 1 4.6161 -2.4249 -0.4386 36 1 5.6009 -0.9499 -0.5891 37 1 2.7703 -2.8497 2.9679 38 1 2.0098 -1.3978 2.2673 39 1 -0.2268 -2.2536 2.8152 40 1 0.7760 -2.2785 4.2860 41 1 1.2794 -4.6830 3.8871 42 1 0.4410 -4.0751 6.0469 43 1 -0.8907 -2.8944 5.8203 44 1 -2.4728 -4.3152 6.7735 45 1 -1.0538 -5.0783 7.5404 46 1 -3.5515 -5.9621 9.0695 47 1 -1.5975 -6.4353 3.7474 48 1 -0.0589 -6.4853 4.6614 49 1 -0.6830 -4.3471 1.5729 50 1 -0.0117 -5.8960 2.1391 51 1 1.2275 -4.9436 0.1619 52 1 2.2624 -5.1566 1.5959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039205284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:13 Heat of formation + Delta-G solvation = 25.723602 kcal Electronic energy + Delta-G solvation = -31386.134880 eV Core-core repulsion = 27386.122221 eV Total energy + Delta-G solvation = -4000.012659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.27352 -41.09142 -39.68303 -37.96515 -35.43421 -35.25378 -33.60718 -32.65856 -31.85087 -30.90955 -29.68229 -28.95507 -27.15310 -26.81895 -25.42843 -24.41538 -23.43858 -21.86460 -21.69250 -21.48151 -20.83997 -19.94679 -18.83830 -18.60748 -17.71484 -16.83390 -16.72873 -16.58896 -16.48378 -16.08809 -15.74831 -15.29065 -15.18269 -15.12023 -14.61894 -14.43113 -14.27279 -14.14567 -13.96955 -13.82404 -13.80362 -13.55477 -13.42591 -13.27406 -13.23264 -13.13379 -12.90311 -12.70524 -12.32699 -12.25631 -12.17603 -12.03433 -11.80192 -11.67813 -11.55074 -11.31966 -11.10787 -11.04674 -10.90826 -10.68656 -10.58683 -9.77412 -9.41087 -8.86631 -7.83907 -5.18858 0.68240 1.06793 1.44631 1.48045 1.54277 1.67389 1.98217 2.16274 2.50123 3.32376 3.33895 3.61426 3.62462 3.71033 3.80631 3.83684 3.92587 4.07265 4.12610 4.23139 4.26997 4.28156 4.35833 4.42085 4.43036 4.45902 4.57594 4.62474 4.70626 4.74513 4.78798 4.82238 4.84156 4.88793 4.94323 4.98373 5.02135 5.04394 5.13117 5.15490 5.18879 5.28825 5.42202 5.46137 5.49209 5.54462 5.61515 5.73310 5.81889 6.14059 6.20521 6.22594 6.88526 6.96791 7.12475 7.81420 8.45703 9.26286 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002193 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.466537 B =12763.757687 C =13079.291021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.040 3.960 3 N -0.527 5.527 4 C 0.214 3.786 5 N -0.438 5.438 6 C 0.064 3.936 7 C -0.091 4.091 8 C 0.601 3.399 9 O -0.571 6.571 10 N -0.591 5.591 11 C 0.116 3.884 12 C -0.122 4.122 13 C -0.061 4.061 14 C -0.079 4.079 15 H 0.063 0.937 16 C -0.121 4.121 17 C 0.182 3.818 18 N -0.632 5.632 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.137 3.863 28 C -0.124 4.124 29 C 0.115 3.885 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.246 0.754 47 H 0.035 0.965 48 H 0.027 0.973 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.979 12.745 -16.164 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 N -0.246 5.246 4 C -0.068 4.068 5 N -0.120 5.120 6 C -0.077 4.077 7 C -0.208 4.208 8 C 0.387 3.613 9 O -0.449 6.449 10 N -0.322 5.322 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.080 4.080 14 C -0.098 4.098 15 H 0.081 0.919 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.358 5.358 19 C -0.372 4.372 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.013 3.987 28 C -0.162 4.162 29 C -0.007 4.007 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.270 0.730 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.099 0.901 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.626 13.041 -16.538 28.788 hybrid contribution -0.841 -1.642 0.678 1.966 sum 18.785 11.398 -15.859 27.098 Atomic orbital electron populations 1.20132 0.87029 1.03213 1.02728 1.21057 0.96938 0.87272 1.03974 1.70016 1.01843 1.30472 1.22248 1.25834 0.97426 0.81873 1.01642 1.45507 1.05732 1.08164 1.52632 1.22445 0.83743 0.95663 1.05863 1.20442 0.86333 0.94094 1.19920 1.17105 0.76980 0.83777 0.83447 1.90813 1.52695 1.68792 1.32641 1.48205 1.67803 1.10377 1.05830 1.21935 0.98924 0.97410 0.82350 1.21990 0.97521 0.95722 1.00820 1.20993 0.96931 0.95928 0.94170 1.22213 0.98054 0.94792 0.94734 0.91901 1.22756 0.99442 0.98858 0.94812 1.20930 0.95034 0.85910 0.92426 1.44846 1.54033 1.18212 1.18690 1.19439 1.19761 0.96575 1.01386 0.90160 1.25660 1.02499 1.00599 0.97454 1.70194 1.47660 1.30377 1.11952 0.85167 0.78669 0.78739 0.76866 1.20199 1.22061 1.20373 1.21772 0.94113 0.95602 0.87254 1.21915 0.97349 1.02027 0.94930 1.21730 0.98148 0.79329 1.01456 0.91073 0.91577 0.89807 0.73016 0.87837 0.91001 0.85859 0.89026 0.89824 0.92102 0.89185 0.89861 0.90673 0.90454 0.97847 0.97974 0.94505 0.94658 0.95566 0.92515 0.90095 0.90131 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.24 71.23 0.73 -0.79 16 2 C 0.04 0.92 6.96 41.96 0.29 1.21 16 3 N -0.53 -11.23 11.20 -187.60 -2.10 -13.33 16 4 C 0.21 2.86 12.52 180.33 2.26 5.12 16 5 N -0.44 -6.15 3.17 -539.82 -1.71 -7.87 16 6 C 0.06 0.38 11.07 127.77 1.41 1.79 16 7 C -0.09 -1.91 4.71 40.01 0.19 -1.72 16 8 C 0.60 14.23 6.61 86.47 0.57 14.80 16 9 O -0.57 -17.90 16.53 -4.27 -0.07 -17.97 16 10 N -0.59 -11.26 2.97 -822.69 -2.44 -13.70 16 11 C 0.12 1.76 6.34 86.51 0.55 2.31 16 12 C -0.12 -2.20 5.21 30.82 0.16 -2.04 16 13 C -0.06 -1.31 1.65 -10.77 -0.02 -1.33 16 14 C -0.08 -2.42 2.56 -9.40 -0.02 -2.44 16 15 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.12 -4.10 5.42 31.80 0.17 -3.93 16 17 C 0.18 9.03 5.38 86.75 0.47 9.50 16 18 N -0.63 -32.74 3.39 -691.89 -2.35 -35.09 16 19 C -0.24 -13.83 10.28 84.03 0.86 -12.97 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 22 N -0.95 -58.43 10.31 21.65 0.22 -58.21 16 23 Si 0.98 46.44 29.55 68.60 2.03 48.46 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.14 5.38 5.80 86.86 0.50 5.89 16 28 C -0.12 -2.59 5.21 30.67 0.16 -2.43 16 29 C 0.11 2.16 6.44 86.36 0.56 2.71 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.36 7.94 -2.39 -0.02 1.34 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.25 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.07 0.68 7.80 -2.39 -0.02 0.66 16 36 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.33 6.24 -2.39 -0.01 1.32 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.51 7.32 -2.38 -0.02 1.49 16 41 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 42 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 43 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 44 H 0.00 0.18 7.38 -2.39 -0.02 0.17 16 45 H 0.00 0.11 7.50 -2.38 -0.02 0.10 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.04 1.37 8.03 -2.39 -0.02 1.35 16 48 H 0.03 0.99 8.03 -2.39 -0.02 0.98 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.73 7.32 -2.39 -0.02 1.72 16 51 H 0.08 1.76 6.99 -2.39 -0.02 1.74 16 52 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.39 406.61 3.78 -76.61 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.89 Total: 8.99 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 9.31 Total: 12.09 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -8.38 Total: -128.19 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.07 Total: -17.97 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.39 3.78 -76.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039205284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.331 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds