Wall clock time and date at job start Wed Apr 1 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33316 * 126.10537 * 2 1 4 4 C 1.30859 * 109.68537 * 180.27387 * 3 2 1 5 5 N 1.34504 * 109.16045 * 359.76628 * 4 3 2 6 6 C 1.46499 * 126.47271 * 180.02562 * 5 4 3 7 7 C 1.36664 * 126.10579 * 179.88330 * 2 1 3 8 8 C 1.46762 * 126.84541 * 359.97438 * 7 2 1 9 9 O 1.21682 * 120.00103 * 84.13938 * 8 7 2 10 10 N 1.34780 * 120.00000 * 264.14034 * 8 7 2 11 11 C 1.46924 * 120.63063 * 6.39788 * 10 8 7 12 12 C 1.53191 * 108.77151 * 126.37196 * 11 10 8 13 13 C 1.53038 * 109.31226 * 54.63896 * 12 11 10 14 14 C 1.53038 * 109.53887 * 298.62988 * 13 12 11 15 15 C 1.46929 * 120.62706 * 186.38163 * 10 8 7 16 16 H 1.09003 * 109.70035 * 113.77251 * 15 10 8 17 17 C 1.52992 * 109.58836 * 353.41411 * 15 10 8 18 18 H 1.09002 * 110.88790 * 313.68389 * 17 15 10 19 19 C 1.55163 * 111.00486 * 189.80450 * 17 15 10 20 20 C 1.54321 * 102.94166 * 206.42546 * 19 17 15 21 21 N 1.47019 * 107.40739 * 22.11427 * 20 19 17 22 22 C 1.36935 * 125.65209 * 181.10294 * 21 20 19 23 23 H 1.08003 * 119.99711 * 185.76403 * 22 21 20 24 24 C 1.38809 * 119.99848 * 5.76132 * 22 21 20 25 25 N 1.31619 * 120.00133 * 7.20049 * 24 22 21 26 26 Si 1.86798 * 119.99895 * 187.19793 * 24 22 21 27 27 H 1.48500 * 109.47287 * 94.99172 * 26 24 22 28 28 H 1.48502 * 109.47184 * 214.99241 * 26 24 22 29 29 H 1.48499 * 109.47015 * 334.98810 * 26 24 22 30 30 C 1.47756 * 108.52419 * 1.18359 * 21 20 19 31 31 H 1.08998 * 109.47418 * 270.11649 * 1 2 3 32 32 H 1.09004 * 109.47093 * 30.12434 * 1 2 3 33 33 H 1.09007 * 109.47155 * 150.11503 * 1 2 3 34 34 H 1.07993 * 125.42258 * 179.74368 * 4 3 2 35 35 H 1.08993 * 109.47438 * 264.81124 * 6 5 4 36 36 H 1.09006 * 109.47004 * 24.80914 * 6 5 4 37 37 H 1.08999 * 109.47071 * 144.80683 * 6 5 4 38 38 H 1.09000 * 109.58436 * 6.58735 * 11 10 8 39 39 H 1.08996 * 109.70320 * 246.22914 * 11 10 8 40 40 H 1.08995 * 109.50279 * 294.68212 * 12 11 10 41 41 H 1.08999 * 109.49595 * 174.58615 * 12 11 10 42 42 H 1.09008 * 109.45875 * 178.61091 * 13 12 11 43 43 H 1.08997 * 109.45238 * 58.64945 * 13 12 11 44 44 H 1.09004 * 109.49813 * 301.41865 * 14 13 12 45 45 H 1.08999 * 109.50160 * 181.32189 * 14 13 12 46 46 H 1.09000 * 110.71741 * 88.06053 * 19 17 15 47 47 H 1.08993 * 110.71800 * 324.78791 * 19 17 15 48 48 H 1.08999 * 109.88349 * 141.61098 * 20 19 17 49 49 H 1.09003 * 109.88175 * 262.62042 * 20 19 17 50 50 H 0.97003 * 120.00113 * 179.97438 * 25 24 22 51 51 H 1.09000 * 110.28530 * 216.94420 * 30 21 20 52 52 H 1.08998 * 110.43289 * 94.62730 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6363 -0.0047 6 6 4.8305 -1.4498 -0.0094 7 6 2.3124 -1.1042 0.0022 8 6 1.8821 -2.5073 0.0056 9 8 1.6005 -3.0598 -1.0413 10 7 1.7989 -3.1838 1.1684 11 6 1.9992 -2.4956 2.4509 12 6 0.7921 -2.7722 3.3526 13 6 0.5881 -4.2840 3.4757 14 6 0.3042 -4.8763 2.0934 15 6 1.5057 -4.6235 1.1773 16 1 2.3708 -5.1724 1.5495 17 6 1.1752 -5.0885 -0.2423 18 1 0.4739 -4.4054 -0.7216 19 6 0.6239 -6.5389 -0.2382 20 6 0.9956 -7.0538 -1.6447 21 7 2.1094 -6.2288 -2.1350 22 6 2.7166 -6.3520 -3.3562 23 1 3.5889 -5.7588 -3.5877 24 6 2.2109 -7.2392 -4.2964 25 7 1.0704 -7.8565 -4.0720 26 14 3.1492 -7.5569 -5.8801 27 1 3.9985 -8.7643 -5.7186 28 1 2.1872 -7.7732 -6.9905 29 1 4.0078 -6.3856 -6.1902 30 6 2.4630 -5.2477 -1.0884 31 1 -0.3634 0.0021 1.0276 32 1 -0.3633 0.8889 -0.5158 33 1 -0.3634 -0.8911 -0.5121 34 1 4.3970 1.3744 -0.0112 35 1 5.0764 -1.7300 -1.0336 36 1 5.6527 -0.8753 0.4174 37 1 4.6690 -2.3494 0.5846 38 1 2.0893 -1.4229 2.2797 39 1 2.9055 -2.8667 2.9294 40 1 -0.0986 -2.3192 2.9174 41 1 0.9711 -2.3477 4.3404 42 1 -0.2553 -4.4840 4.1367 43 1 1.4885 -4.7393 3.8879 44 1 -0.5819 -4.4034 1.6700 45 1 0.1358 -5.9493 2.1850 46 1 -0.4573 -6.5401 -0.1003 47 1 1.1127 -7.1351 0.5323 48 1 1.3046 -8.0976 -1.5877 49 1 0.1401 -6.9566 -2.3131 50 1 0.7168 -8.4763 -4.7292 51 1 2.7396 -4.2955 -1.5410 52 1 3.2779 -5.6264 -0.4715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039219008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:07 Heat of formation + Delta-G solvation = 60.442984 kcal Electronic energy + Delta-G solvation = -33086.432193 eV Core-core repulsion = 29087.925080 eV Total energy + Delta-G solvation = -3998.507113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.26761 -41.59533 -38.70336 -38.31237 -35.41868 -34.95511 -33.91698 -32.80425 -32.04857 -30.59031 -29.54713 -28.86217 -27.14402 -26.70964 -25.67218 -24.40744 -23.42616 -22.03976 -21.59733 -21.38810 -21.05666 -19.96376 -19.01046 -18.18224 -17.52289 -16.95280 -16.83915 -16.45902 -16.37714 -16.09580 -15.67397 -15.33546 -15.11724 -15.03264 -14.73832 -14.45132 -14.36632 -14.15249 -14.08278 -13.92366 -13.65554 -13.52727 -13.46606 -13.25107 -13.20201 -13.14500 -12.82555 -12.75346 -12.33134 -12.12236 -12.02719 -11.87221 -11.73695 -11.54501 -11.48891 -11.40665 -11.20743 -11.13866 -10.72952 -10.59938 -10.15734 -9.56778 -9.34661 -8.80834 -7.82662 -5.19837 0.72890 1.18727 1.39457 1.42951 1.51764 1.77136 1.99797 2.19019 2.48015 3.29841 3.37597 3.61084 3.72780 3.75736 3.84093 3.87697 4.00596 4.07941 4.14822 4.17455 4.23936 4.26584 4.30872 4.33488 4.44459 4.54641 4.59325 4.60752 4.71746 4.73244 4.76152 4.85528 4.92451 4.93867 4.97317 5.01368 5.08596 5.12210 5.19137 5.21144 5.24552 5.29512 5.40359 5.50022 5.54076 5.57218 5.63571 5.76872 5.84328 6.17225 6.22659 6.35216 6.97316 7.10055 7.16183 7.80179 8.47060 9.25381 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.004011 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.459468 B = 6979.199982 C = 8557.705712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.038 3.962 3 N -0.524 5.524 4 C 0.210 3.790 5 N -0.439 5.439 6 C 0.065 3.935 7 C -0.086 4.086 8 C 0.577 3.423 9 O -0.530 6.530 10 N -0.591 5.591 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.113 4.113 14 C -0.126 4.126 15 C 0.166 3.834 16 H 0.081 0.919 17 C -0.076 4.076 18 H 0.079 0.921 19 C -0.126 4.126 20 C 0.179 3.821 21 N -0.625 5.625 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.070 4.070 25 N -0.950 5.950 26 Si 0.978 3.022 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.271 1.271 30 C 0.146 3.854 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.253 0.747 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.076 0.924 48 H -0.008 1.008 49 H 0.017 0.983 50 H 0.246 0.754 51 H 0.048 0.952 52 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 15.667 22.138 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 N -0.243 5.243 4 C -0.072 4.072 5 N -0.122 5.122 6 C -0.076 4.076 7 C -0.203 4.203 8 C 0.363 3.637 9 O -0.407 6.407 10 N -0.324 5.324 11 C -0.011 4.011 12 C -0.166 4.166 13 C -0.151 4.151 14 C -0.164 4.164 15 C 0.063 3.937 16 H 0.099 0.901 17 C -0.096 4.096 18 H 0.097 0.903 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.351 5.351 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.262 4.262 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.210 1.210 28 H -0.219 1.219 29 H -0.196 1.196 30 C 0.021 3.979 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.269 0.731 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.010 0.990 49 H 0.035 0.965 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 4.161 15.953 21.413 27.025 hybrid contribution 0.634 -1.383 -1.694 2.277 sum 4.795 14.571 19.719 24.983 Atomic orbital electron populations 1.20105 0.86865 1.02490 1.03269 1.21044 0.96983 0.87125 1.04290 1.69994 1.01649 1.30335 1.22312 1.25821 0.97538 0.81776 1.02059 1.45493 1.05788 1.08208 1.52676 1.22376 0.84479 0.96576 1.04139 1.20692 0.86089 0.94494 1.19056 1.17299 0.78864 0.83670 0.83822 1.91011 1.48621 1.66924 1.34096 1.48070 1.69390 1.08971 1.05985 1.21882 0.99683 0.97264 0.82318 1.21898 0.97415 0.97032 1.00301 1.21519 1.03125 0.94960 0.95460 1.21968 0.96429 1.02404 0.95583 1.21272 0.98693 0.79154 0.94564 0.90133 1.22551 0.97961 0.95065 0.93987 0.90338 1.22850 1.00723 0.96375 0.96488 1.20953 0.90143 0.91652 0.91886 1.44868 1.38758 1.37425 1.13999 1.19386 1.07282 1.19230 0.90879 0.91106 1.25668 0.98284 1.00483 1.01783 1.70212 1.20538 1.32960 1.36270 0.85058 0.77437 0.78071 0.78798 1.20953 1.21863 1.19589 1.22183 0.94729 0.91347 0.89605 0.89274 0.90371 0.92849 0.73077 0.91109 0.84346 0.90236 0.90256 0.89755 0.92173 0.88200 0.89994 0.90641 0.92420 0.89686 0.90561 0.90566 0.99028 0.96469 0.94510 0.93390 0.97858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.24 71.24 0.73 -0.96 16 2 C 0.04 1.04 7.05 41.97 0.30 1.34 16 3 N -0.52 -13.36 11.20 -187.58 -2.10 -15.47 16 4 C 0.21 3.88 12.52 180.33 2.26 6.14 16 5 N -0.44 -9.14 3.17 -539.82 -1.71 -10.86 16 6 C 0.07 0.95 10.99 127.77 1.40 2.36 16 7 C -0.09 -2.37 4.67 40.01 0.19 -2.19 16 8 C 0.58 18.20 6.45 86.47 0.56 18.75 16 9 O -0.53 -22.62 10.02 -4.29 -0.04 -22.66 16 10 N -0.59 -14.52 2.97 -799.61 -2.38 -16.89 16 11 C 0.11 1.77 6.31 86.36 0.55 2.32 16 12 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 13 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 14 C -0.13 -2.56 4.87 30.67 0.15 -2.41 16 15 C 0.17 4.42 2.57 44.97 0.12 4.53 16 16 H 0.08 2.04 7.87 -2.39 -0.02 2.02 16 17 C -0.08 -2.93 1.91 -9.40 -0.02 -2.95 16 18 H 0.08 3.54 5.97 -4.75 -0.03 3.51 16 19 C -0.13 -4.95 5.09 31.78 0.16 -4.78 16 20 C 0.18 9.76 5.44 86.73 0.47 10.23 16 21 N -0.62 -36.14 3.41 -691.15 -2.35 -38.49 16 22 C -0.24 -14.86 10.27 84.03 0.86 -13.99 16 23 H 0.07 4.30 7.84 -2.91 -0.02 4.27 16 24 C -0.07 -4.30 5.45 84.86 0.46 -3.84 16 25 N -0.95 -61.56 10.45 21.65 0.23 -61.33 16 26 Si 0.98 49.23 29.56 68.60 2.03 51.26 16 27 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 28 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 29 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 30 C 0.15 6.86 5.89 86.79 0.51 7.37 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.48 7.94 -2.38 -0.02 1.46 16 34 H 0.25 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.14 0.72 8.13 -2.38 -0.02 0.70 16 37 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 38 H 0.08 1.36 6.32 -2.39 -0.02 1.35 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.08 1.66 7.17 -2.39 -0.02 1.64 16 46 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.08 2.60 7.83 -2.39 -0.02 2.58 16 48 H -0.01 -0.50 7.97 -2.39 -0.02 -0.52 16 49 H 0.02 1.07 6.88 -2.39 -0.02 1.05 16 50 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 51 H 0.05 2.46 5.42 -13.08 -0.07 2.39 16 52 H 0.00 0.17 7.84 -2.39 -0.02 0.15 16 Total: -1.00 -86.58 396.82 3.56 -83.03 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.83 Total: 12.25 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 9.06 Total: 19.17 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -8.32 Total: -143.04 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.04 Total: -22.66 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -86.58 3.56 -83.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039219008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.472 kcal (2) G-P(sol) polarization free energy of solvation -86.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds