Wall clock time and date at job start Wed Apr 1 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33325 * 126.10633 * 2 1 4 4 C 1.30856 * 109.68239 * 180.27425 * 3 2 1 5 5 N 1.34493 * 109.16482 * 359.76938 * 4 3 2 6 6 C 1.46506 * 126.47369 * 180.02562 * 5 4 3 7 7 C 1.36662 * 126.10706 * 179.88097 * 2 1 3 8 8 C 1.46764 * 126.84368 * 359.97438 * 7 2 1 9 9 O 1.21680 * 120.00170 * 279.51362 * 8 7 2 10 10 N 1.34784 * 119.99851 * 99.51412 * 8 7 2 11 11 C 1.46923 * 120.63080 * 6.04781 * 10 8 7 12 12 C 1.53191 * 108.77468 * 233.58630 * 11 10 8 13 13 C 1.53040 * 109.31394 * 305.36219 * 12 11 10 14 14 C 1.53047 * 109.53474 * 61.36862 * 13 12 11 15 15 C 1.46927 * 120.62726 * 186.02573 * 10 8 7 16 16 H 1.08999 * 109.70113 * 246.26700 * 15 10 8 17 17 C 1.52997 * 109.58773 * 6.62726 * 15 10 8 18 18 H 1.09006 * 110.88573 * 304.49281 * 17 15 10 19 19 C 1.55160 * 111.00256 * 180.61700 * 17 15 10 20 20 C 1.54322 * 103.10216 * 206.29428 * 19 17 15 21 21 N 1.47487 * 107.03458 * 22.24024 * 20 19 17 22 22 C 1.36934 * 125.59229 * 181.00036 * 21 20 19 23 23 H 1.08004 * 120.00151 * 180.02562 * 22 21 20 24 24 C 1.38804 * 120.00350 * 0.02959 * 22 21 20 25 25 N 1.31626 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00533 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47201 * 89.99595 * 26 24 22 28 28 H 1.48504 * 109.47394 * 210.00019 * 26 24 22 29 29 H 1.48501 * 109.46742 * 329.99547 * 26 24 22 30 30 C 1.47431 * 108.75835 * 1.02571 * 21 20 19 31 31 H 1.08996 * 109.47540 * 270.12076 * 1 2 3 32 32 H 1.09009 * 109.46927 * 30.12030 * 1 2 3 33 33 H 1.09000 * 109.47276 * 150.11248 * 1 2 3 34 34 H 1.07999 * 125.42089 * 179.74064 * 4 3 2 35 35 H 1.09004 * 109.46744 * 264.96535 * 6 5 4 36 36 H 1.08995 * 109.47165 * 24.96350 * 6 5 4 37 37 H 1.09002 * 109.46804 * 144.97100 * 6 5 4 38 38 H 1.09001 * 109.58600 * 113.79972 * 11 10 8 39 39 H 1.09004 * 109.70430 * 353.44061 * 11 10 8 40 40 H 1.08999 * 109.49858 * 185.41087 * 12 11 10 41 41 H 1.08996 * 109.50056 * 65.31785 * 12 11 10 42 42 H 1.08997 * 109.46371 * 301.35039 * 13 12 11 43 43 H 1.08998 * 109.44950 * 181.37466 * 13 12 11 44 44 H 1.08997 * 109.49943 * 178.68332 * 14 13 12 45 45 H 1.08997 * 109.52710 * 58.60111 * 14 13 12 46 46 H 1.08999 * 110.72041 * 324.74827 * 19 17 15 47 47 H 1.08997 * 110.72257 * 87.84361 * 19 17 15 48 48 H 1.09003 * 109.88437 * 141.69509 * 20 19 17 49 49 H 1.08994 * 109.88427 * 262.86494 * 20 19 17 50 50 H 0.96995 * 119.99813 * 180.02562 * 25 24 22 51 51 H 1.09001 * 110.36398 * 217.05475 * 30 21 20 52 52 H 1.08999 * 110.36489 * 94.73133 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6121 -0.6362 -0.0048 6 6 4.8305 -1.4498 -0.0095 7 6 2.3123 -1.1041 0.0023 8 6 1.8820 -2.5073 0.0057 9 8 1.5375 -3.0354 1.0464 10 7 1.8685 -3.2108 -1.1438 11 6 2.4049 -2.6310 -2.3827 12 6 1.3351 -2.7260 -3.4751 13 6 0.8761 -4.1798 -3.6089 14 6 0.2599 -4.6455 -2.2877 15 6 1.3175 -4.5723 -1.1817 16 1 2.1146 -5.2857 -1.3907 17 6 0.6737 -4.9028 0.1663 18 1 1.3858 -4.7679 0.9805 19 6 0.0936 -6.3419 0.1676 20 6 -1.0338 -6.2636 1.2185 21 7 -1.4165 -4.8442 1.3367 22 6 -2.3722 -4.3440 2.1803 23 1 -2.5806 -3.2843 2.1925 24 6 -3.0731 -5.1988 3.0197 25 7 -2.8195 -6.4903 3.0046 26 14 -4.3764 -4.5165 4.1710 27 1 -5.6924 -4.5146 3.4832 28 1 -4.4549 -5.3641 5.3878 29 1 -4.0177 -3.1282 4.5572 30 6 -0.6010 -4.0534 0.3969 31 1 -0.3634 0.0022 1.0276 32 1 -0.3633 0.8890 -0.5157 33 1 -0.3634 -0.8910 -0.5121 34 1 4.3970 1.3744 -0.0113 35 1 5.0779 -1.7276 -1.0342 36 1 5.6520 -0.8763 0.4198 37 1 4.6680 -2.3508 0.5820 38 1 3.2920 -3.1843 -2.6909 39 1 2.6656 -1.5857 -2.2165 40 1 1.7525 -2.3875 -4.4234 41 1 0.4847 -2.0991 -3.2070 42 1 1.7315 -4.8098 -3.8526 43 1 0.1325 -4.2540 -4.4024 44 1 -0.0880 -5.6733 -2.3908 45 1 -0.5807 -4.0010 -2.0305 46 1 -0.3098 -6.5959 -0.8126 47 1 0.8527 -7.0634 0.4695 48 1 -1.8887 -6.8546 0.8898 49 1 -0.6723 -6.6328 2.1782 50 1 -3.3095 -7.0877 3.5909 51 1 -0.3409 -3.0909 0.8374 52 1 -1.1362 -3.9098 -0.5417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039219010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:16 Heat of formation + Delta-G solvation = 85.721289 kcal Electronic energy + Delta-G solvation = -33357.599372 eV Core-core repulsion = 29360.188408 eV Total energy + Delta-G solvation = -3997.410964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35616 -40.47065 -37.38691 -36.76715 -34.60067 -33.17002 -32.79896 -31.29937 -30.77420 -28.88774 -28.56288 -27.14052 -26.17192 -25.27149 -24.27095 -23.52407 -22.23966 -20.84766 -20.68320 -19.86944 -19.60105 -18.52924 -17.35192 -16.77966 -16.30548 -15.81902 -15.59657 -15.24013 -15.09770 -14.57612 -14.42597 -14.33990 -14.00485 -13.74802 -13.63651 -13.50607 -13.25498 -13.04081 -12.88566 -12.73097 -12.34598 -12.27536 -12.09926 -12.01619 -11.70027 -11.60105 -11.23451 -11.05221 -10.86729 -10.78390 -10.67227 -10.46127 -10.23375 -9.97171 -9.91759 -9.77469 -9.70084 -9.60293 -9.45062 -8.82509 -8.49487 -8.37116 -8.29841 -6.56505 -5.52774 -2.82932 1.63932 2.20413 2.74989 2.92602 3.17114 3.51135 3.55938 3.58413 4.34178 4.38977 4.45134 4.61944 4.66423 4.74940 4.76275 4.83112 4.98585 5.04536 5.07095 5.19851 5.24437 5.28423 5.37982 5.51130 5.62560 5.68030 5.77834 5.79704 5.81425 5.85610 5.90181 5.91912 6.00638 6.02535 6.08821 6.11995 6.18401 6.33321 6.41363 6.50496 6.56880 6.70595 6.78065 6.90895 6.96042 7.08661 7.35873 7.44651 7.74840 7.82186 7.90387 8.00191 8.29810 8.45913 9.41875 10.03685 10.71865 11.59569 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.004123 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.995858 B = 6788.856836 C = 8081.573686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 N -0.492 5.492 4 C 0.193 3.807 5 N -0.444 5.444 6 C 0.070 3.930 7 C -0.068 4.068 8 C 0.583 3.417 9 O -0.478 6.478 10 N -0.598 5.598 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.141 4.141 15 C 0.163 3.837 16 H 0.069 0.931 17 C -0.107 4.107 18 H 0.113 0.887 19 C -0.148 4.148 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.214 4.214 23 H 0.074 0.926 24 C -0.013 4.013 25 N -0.926 5.926 26 Si 0.907 3.093 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.144 3.856 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.208 0.792 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.042 0.958 50 H 0.249 0.751 51 H 0.052 0.948 52 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.038 8.829 -15.487 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 N -0.211 5.211 4 C -0.089 4.089 5 N -0.128 5.128 6 C -0.073 4.073 7 C -0.184 4.184 8 C 0.367 3.633 9 O -0.350 6.350 10 N -0.332 5.332 11 C -0.011 4.011 12 C -0.172 4.172 13 C -0.156 4.156 14 C -0.179 4.179 15 C 0.060 3.940 16 H 0.087 0.913 17 C -0.126 4.126 18 H 0.131 0.869 19 C -0.187 4.187 20 C 0.058 3.942 21 N -0.329 5.329 22 C -0.343 4.343 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C 0.018 3.982 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.070 0.930 52 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 17.571 9.149 -14.724 24.683 hybrid contribution -0.187 -0.472 0.545 0.745 sum 17.384 8.677 -14.179 24.053 Atomic orbital electron populations 1.20154 0.86885 1.02770 1.03386 1.20858 0.96457 0.86658 1.03172 1.70012 1.00335 1.30236 1.20495 1.24933 0.97196 0.81647 1.05120 1.45326 1.05884 1.07677 1.53960 1.22124 0.84761 0.96586 1.03782 1.20934 0.84433 0.95471 1.17579 1.16998 0.79152 0.83033 0.84075 1.90971 1.44740 1.67310 1.31967 1.48067 1.60970 1.15908 1.08283 1.21643 0.96192 0.98813 0.84480 1.21901 0.99266 0.97975 0.98076 1.21531 1.00549 0.95539 0.97952 1.22193 0.99108 1.03044 0.93531 1.21286 0.94881 0.80737 0.97086 0.91291 1.23018 0.99034 0.95622 0.94911 0.86920 1.23079 0.99505 0.95733 1.00357 1.21125 0.92472 0.85974 0.94646 1.44535 1.42049 1.02555 1.43712 1.19057 1.10007 0.92394 1.12793 0.90780 1.24742 1.00333 0.95604 1.00190 1.69972 1.44063 1.01675 1.41779 0.86171 0.81716 0.77802 0.80485 1.21839 1.21853 1.20791 1.21951 0.88820 0.95124 0.92286 0.90375 0.90813 0.91103 0.77531 0.90268 0.88842 0.89558 0.91721 0.90354 0.91097 0.91153 0.92155 0.91699 0.90243 0.89923 0.92781 0.92796 0.94351 0.93991 0.94095 0.93000 0.97297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.24 36.01 0.37 -0.70 16 2 C 0.06 0.90 7.15 -82.51 -0.59 0.31 16 3 N -0.49 -6.85 11.20 -10.65 -0.12 -6.97 16 4 C 0.19 1.97 12.52 -90.58 -1.13 0.84 16 5 N -0.44 -4.63 3.02 -121.97 -0.37 -5.00 16 6 C 0.07 0.45 10.99 59.85 0.66 1.10 16 7 C -0.07 -0.95 4.67 -82.14 -0.38 -1.34 16 8 C 0.58 9.06 5.96 -12.81 -0.08 8.98 16 9 O -0.48 -9.58 10.75 5.21 0.06 -9.53 16 10 N -0.60 -7.71 2.96 -166.72 -0.49 -8.20 16 11 C 0.11 1.06 6.34 -3.71 -0.02 1.03 16 12 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 13 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 14 C -0.14 -1.81 4.72 -26.61 -0.13 -1.93 16 15 C 0.16 2.28 2.80 -67.60 -0.19 2.09 16 16 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.11 -2.01 2.12 -88.47 -0.19 -2.20 16 18 H 0.11 2.41 5.74 -52.92 -0.30 2.11 16 19 C -0.15 -2.90 6.31 -24.90 -0.16 -3.06 16 20 C 0.18 4.73 5.39 -2.81 -0.02 4.71 16 21 N -0.60 -16.54 3.41 -169.70 -0.58 -17.11 16 22 C -0.21 -6.38 10.28 -15.06 -0.15 -6.53 16 23 H 0.07 2.16 7.83 -52.48 -0.41 1.75 16 24 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 25 N -0.93 -28.65 10.31 55.49 0.57 -28.08 16 26 Si 0.91 23.42 29.55 -169.99 -5.02 18.39 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 30 C 0.14 3.23 5.68 -2.53 -0.01 3.22 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 34 H 0.21 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.34 8.13 -51.93 -0.42 -0.09 16 37 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.76 6.22 -51.93 -0.32 0.44 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.03 6.48 -51.93 -0.34 0.69 16 45 H 0.08 1.25 5.68 -51.93 -0.29 0.96 16 46 H 0.05 0.96 6.10 -51.93 -0.32 0.64 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 49 H 0.04 1.21 7.39 -51.93 -0.38 0.83 16 50 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.05 1.25 5.63 -51.93 -0.29 0.96 16 52 H 0.01 0.21 5.38 -51.93 -0.28 -0.07 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -36.68 391.03 -10.87 -47.55 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.37 Total: -0.33 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.44 Total: 3.39 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.99 Total: -65.37 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.68 -10.87 -47.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039219010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.273 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds