Wall clock time and date at job start Wed Apr 1 2020 04:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33325 * 126.10633 * 2 1 4 4 C 1.30856 * 109.68239 * 180.27425 * 3 2 1 5 5 N 1.34493 * 109.16482 * 359.76938 * 4 3 2 6 6 C 1.46506 * 126.47369 * 180.02562 * 5 4 3 7 7 C 1.36662 * 126.10706 * 179.88097 * 2 1 3 8 8 C 1.46764 * 126.84368 * 359.97438 * 7 2 1 9 9 O 1.21680 * 120.00170 * 279.51362 * 8 7 2 10 10 N 1.34784 * 119.99851 * 99.51412 * 8 7 2 11 11 C 1.46923 * 120.63080 * 6.04781 * 10 8 7 12 12 C 1.53191 * 108.77468 * 233.58630 * 11 10 8 13 13 C 1.53040 * 109.31394 * 305.36219 * 12 11 10 14 14 C 1.53047 * 109.53474 * 61.36862 * 13 12 11 15 15 C 1.46927 * 120.62726 * 186.02573 * 10 8 7 16 16 H 1.08999 * 109.70113 * 246.26700 * 15 10 8 17 17 C 1.52997 * 109.58773 * 6.62726 * 15 10 8 18 18 H 1.09006 * 110.88573 * 304.49281 * 17 15 10 19 19 C 1.55160 * 111.00256 * 180.61700 * 17 15 10 20 20 C 1.54322 * 103.10216 * 206.29428 * 19 17 15 21 21 N 1.47487 * 107.03458 * 22.24024 * 20 19 17 22 22 C 1.36934 * 125.59229 * 181.00036 * 21 20 19 23 23 H 1.08004 * 120.00151 * 180.02562 * 22 21 20 24 24 C 1.38804 * 120.00350 * 0.02959 * 22 21 20 25 25 N 1.31626 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00533 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47201 * 89.99595 * 26 24 22 28 28 H 1.48504 * 109.47394 * 210.00019 * 26 24 22 29 29 H 1.48501 * 109.46742 * 329.99547 * 26 24 22 30 30 C 1.47431 * 108.75835 * 1.02571 * 21 20 19 31 31 H 1.08996 * 109.47540 * 270.12076 * 1 2 3 32 32 H 1.09009 * 109.46927 * 30.12030 * 1 2 3 33 33 H 1.09000 * 109.47276 * 150.11248 * 1 2 3 34 34 H 1.07999 * 125.42089 * 179.74064 * 4 3 2 35 35 H 1.09004 * 109.46744 * 264.96535 * 6 5 4 36 36 H 1.08995 * 109.47165 * 24.96350 * 6 5 4 37 37 H 1.09002 * 109.46804 * 144.97100 * 6 5 4 38 38 H 1.09001 * 109.58600 * 113.79972 * 11 10 8 39 39 H 1.09004 * 109.70430 * 353.44061 * 11 10 8 40 40 H 1.08999 * 109.49858 * 185.41087 * 12 11 10 41 41 H 1.08996 * 109.50056 * 65.31785 * 12 11 10 42 42 H 1.08997 * 109.46371 * 301.35039 * 13 12 11 43 43 H 1.08998 * 109.44950 * 181.37466 * 13 12 11 44 44 H 1.08997 * 109.49943 * 178.68332 * 14 13 12 45 45 H 1.08997 * 109.52710 * 58.60111 * 14 13 12 46 46 H 1.08999 * 110.72041 * 324.74827 * 19 17 15 47 47 H 1.08997 * 110.72257 * 87.84361 * 19 17 15 48 48 H 1.09003 * 109.88437 * 141.69509 * 20 19 17 49 49 H 1.08994 * 109.88427 * 262.86494 * 20 19 17 50 50 H 0.96995 * 119.99813 * 180.02562 * 25 24 22 51 51 H 1.09001 * 110.36398 * 217.05475 * 30 21 20 52 52 H 1.08999 * 110.36489 * 94.73133 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6121 -0.6362 -0.0048 6 6 4.8305 -1.4498 -0.0095 7 6 2.3123 -1.1041 0.0023 8 6 1.8820 -2.5073 0.0057 9 8 1.5375 -3.0354 1.0464 10 7 1.8685 -3.2108 -1.1438 11 6 2.4049 -2.6310 -2.3827 12 6 1.3351 -2.7260 -3.4751 13 6 0.8761 -4.1798 -3.6089 14 6 0.2599 -4.6455 -2.2877 15 6 1.3175 -4.5723 -1.1817 16 1 2.1146 -5.2857 -1.3907 17 6 0.6737 -4.9028 0.1663 18 1 1.3858 -4.7679 0.9805 19 6 0.0936 -6.3419 0.1676 20 6 -1.0338 -6.2636 1.2185 21 7 -1.4165 -4.8442 1.3367 22 6 -2.3722 -4.3440 2.1803 23 1 -2.5806 -3.2843 2.1925 24 6 -3.0731 -5.1988 3.0197 25 7 -2.8195 -6.4903 3.0046 26 14 -4.3764 -4.5165 4.1710 27 1 -5.6924 -4.5146 3.4832 28 1 -4.4549 -5.3641 5.3878 29 1 -4.0177 -3.1282 4.5572 30 6 -0.6010 -4.0534 0.3969 31 1 -0.3634 0.0022 1.0276 32 1 -0.3633 0.8890 -0.5157 33 1 -0.3634 -0.8910 -0.5121 34 1 4.3970 1.3744 -0.0113 35 1 5.0779 -1.7276 -1.0342 36 1 5.6520 -0.8763 0.4198 37 1 4.6680 -2.3508 0.5820 38 1 3.2920 -3.1843 -2.6909 39 1 2.6656 -1.5857 -2.2165 40 1 1.7525 -2.3875 -4.4234 41 1 0.4847 -2.0991 -3.2070 42 1 1.7315 -4.8098 -3.8526 43 1 0.1325 -4.2540 -4.4024 44 1 -0.0880 -5.6733 -2.3908 45 1 -0.5807 -4.0010 -2.0305 46 1 -0.3098 -6.5959 -0.8126 47 1 0.8527 -7.0634 0.4695 48 1 -1.8887 -6.8546 0.8898 49 1 -0.6723 -6.6328 2.1782 50 1 -3.3095 -7.0877 3.5909 51 1 -0.3409 -3.0909 0.8374 52 1 -1.1362 -3.9098 -0.5417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039219010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:15 Heat of formation + Delta-G solvation = 62.747858 kcal Electronic energy + Delta-G solvation = -33358.595575 eV Core-core repulsion = 29360.188408 eV Total energy + Delta-G solvation = -3998.407167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.28966 -41.66163 -38.78397 -38.21178 -35.44106 -34.93858 -33.87955 -32.76002 -32.03163 -30.73092 -29.47503 -28.63216 -27.14953 -26.80756 -25.70819 -24.69006 -23.36268 -22.17030 -21.69025 -21.45118 -20.92099 -19.61830 -18.94424 -18.20257 -17.39563 -16.89731 -16.78031 -16.63161 -16.48150 -16.15275 -15.70439 -15.40110 -15.13242 -14.94831 -14.77151 -14.51296 -14.49299 -14.13101 -13.97055 -13.86591 -13.74484 -13.51854 -13.37714 -13.27813 -13.17213 -13.08949 -12.83684 -12.71854 -12.38056 -12.10651 -12.02316 -11.90469 -11.69379 -11.59367 -11.47870 -11.41788 -11.20646 -11.07000 -10.69750 -10.57748 -10.12380 -9.59361 -9.35988 -8.77939 -7.83487 -5.16435 0.69995 1.23742 1.40170 1.43571 1.52306 1.69488 1.99433 2.22443 2.49368 3.31686 3.36943 3.59702 3.70154 3.81880 3.85186 3.93808 3.96319 4.02778 4.11503 4.18433 4.26998 4.28964 4.31910 4.35933 4.36839 4.53760 4.58795 4.64102 4.65267 4.74827 4.79301 4.83702 4.84384 4.91344 4.95187 5.05508 5.08282 5.14734 5.16928 5.24635 5.26809 5.29505 5.42636 5.48585 5.50959 5.56487 5.70872 5.74537 5.84374 6.19536 6.22338 6.34785 6.97735 7.12173 7.14382 7.82223 8.48425 9.27342 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.004123 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.995858 B = 6788.856836 C = 8081.573686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.037 3.963 3 N -0.527 5.527 4 C 0.214 3.786 5 N -0.439 5.439 6 C 0.063 3.937 7 C -0.083 4.083 8 C 0.585 3.415 9 O -0.537 6.537 10 N -0.590 5.590 11 C 0.110 3.890 12 C -0.131 4.131 13 C -0.110 4.110 14 C -0.139 4.139 15 C 0.168 3.832 16 H 0.101 0.899 17 C -0.089 4.089 18 H 0.089 0.911 19 C -0.132 4.132 20 C 0.189 3.811 21 N -0.626 5.626 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.069 4.069 25 N -0.952 5.952 26 Si 0.976 3.024 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.275 1.275 30 C 0.148 3.852 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.257 0.743 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.006 0.994 49 H 0.000 1.000 50 H 0.245 0.755 51 H 0.032 0.968 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.107 9.779 -18.322 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 N -0.247 5.247 4 C -0.068 4.068 5 N -0.122 5.122 6 C -0.078 4.078 7 C -0.200 4.200 8 C 0.371 3.629 9 O -0.414 6.414 10 N -0.323 5.323 11 C -0.011 4.011 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.177 4.177 15 C 0.066 3.934 16 H 0.119 0.881 17 C -0.109 4.109 18 H 0.106 0.894 19 C -0.171 4.171 20 C 0.064 3.936 21 N -0.352 5.352 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.804 3.196 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.200 1.200 30 C 0.024 3.976 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.273 0.727 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.024 0.976 49 H 0.018 0.982 50 H 0.055 0.945 51 H 0.050 0.950 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 20.684 10.111 -17.633 29.000 hybrid contribution -1.071 -0.694 1.409 1.901 sum 19.613 9.417 -16.224 27.140 Atomic orbital electron populations 1.20032 0.87948 1.02744 1.01966 1.20862 0.96420 0.87671 1.04555 1.69975 1.01943 1.30333 1.22406 1.25865 0.97290 0.81975 1.01684 1.45538 1.05642 1.08124 1.52849 1.22474 0.83770 0.96038 1.05486 1.20649 0.86242 0.94243 1.18853 1.17248 0.78167 0.83591 0.83908 1.90952 1.47668 1.68685 1.34080 1.48135 1.59888 1.15307 1.08936 1.21935 0.97341 0.99203 0.82666 1.21906 0.98466 0.97384 0.99187 1.21496 1.01481 0.96017 0.95732 1.22143 0.97820 1.02583 0.95104 1.21208 0.95904 0.82068 0.94232 0.88141 1.22743 0.96878 0.93822 0.97429 0.89360 1.22944 0.97741 0.97030 0.99377 1.20907 0.93289 0.84836 0.94558 1.44890 1.42269 1.03884 1.44181 1.19383 1.10983 0.92476 1.13728 0.91263 1.25606 1.02641 0.95977 1.01869 1.70204 1.44929 1.02730 1.42343 0.85113 0.79051 0.77301 0.78141 1.20777 1.21683 1.20000 1.22033 0.90010 0.94495 0.91091 0.92529 0.89448 0.92408 0.72688 0.87626 0.85388 0.91420 0.88324 0.90339 0.88001 0.93349 0.89661 0.90771 0.90090 0.93068 0.90253 0.90571 0.97603 0.98183 0.94529 0.94967 0.96661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.14 10.24 71.24 0.73 -1.42 16 2 C 0.04 1.12 7.15 41.96 0.30 1.42 16 3 N -0.53 -14.13 11.20 -187.59 -2.10 -16.24 16 4 C 0.21 3.75 12.52 180.33 2.26 6.00 16 5 N -0.44 -8.10 3.02 -539.80 -1.63 -9.73 16 6 C 0.06 0.58 10.99 127.77 1.40 1.98 16 7 C -0.08 -2.30 4.67 40.01 0.19 -2.11 16 8 C 0.58 18.45 5.96 86.47 0.52 18.97 16 9 O -0.54 -22.79 10.75 -4.29 -0.05 -22.83 16 10 N -0.59 -14.39 2.96 -799.60 -2.36 -16.75 16 11 C 0.11 1.70 6.34 86.36 0.55 2.24 16 12 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 13 C -0.11 -1.67 5.88 30.62 0.18 -1.49 16 14 C -0.14 -3.30 4.72 30.68 0.14 -3.15 16 15 C 0.17 4.44 2.80 44.97 0.13 4.56 16 16 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 17 C -0.09 -3.44 2.12 -9.40 -0.02 -3.46 16 18 H 0.09 3.94 5.74 -18.21 -0.10 3.83 16 19 C -0.13 -5.23 6.31 31.78 0.20 -5.03 16 20 C 0.19 10.36 5.39 86.64 0.47 10.83 16 21 N -0.63 -36.47 3.41 -690.81 -2.35 -38.82 16 22 C -0.24 -14.89 10.28 84.03 0.86 -14.03 16 23 H 0.07 4.29 7.83 -2.91 -0.02 4.26 16 24 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 25 N -0.95 -61.80 10.31 21.65 0.22 -61.57 16 26 Si 0.98 49.93 29.55 68.60 2.03 51.96 16 27 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 29 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 30 C 0.15 7.04 5.68 86.85 0.49 7.53 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 34 H 0.26 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.13 0.32 8.13 -2.39 -0.02 0.30 16 37 H 0.07 0.93 8.04 -2.39 -0.02 0.91 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.27 6.22 -2.38 -0.01 1.26 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.91 6.48 -2.39 -0.02 1.89 16 45 H 0.05 1.55 5.68 -2.39 -0.01 1.54 16 46 H 0.08 2.74 6.10 -2.39 -0.01 2.72 16 47 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.01 0.35 7.51 -2.39 -0.02 0.33 16 49 H 0.00 -0.01 7.39 -2.39 -0.02 -0.02 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.03 1.68 5.63 -2.39 -0.01 1.66 16 52 H 0.02 0.73 5.38 -2.39 -0.01 0.72 16 Total: -1.00 -88.78 391.03 3.63 -85.15 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.83 Total: 11.50 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 9.05 Total: 17.33 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -8.23 Total: -143.11 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -88.78 3.63 -85.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039219010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.895 kcal (2) G-P(sol) polarization free energy of solvation -88.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds