Wall clock time and date at job start Wed Apr 1 2020 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34671 * 126.58979 * 2 1 4 4 N 1.34135 * 108.02114 * 179.69650 * 3 2 1 5 5 C 1.30501 * 109.25304 * 0.26047 * 4 3 2 6 6 N 1.35040 * 108.70446 * 0.02562 * 5 4 3 7 7 C 1.46493 * 126.40024 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47547 * 264.97160 * 7 6 5 9 9 O 1.21284 * 119.99509 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00884 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62330 * 353.66037 * 10 8 7 12 12 C 1.53623 * 108.54049 * 126.37273 * 11 10 8 13 13 C 1.53043 * 109.24211 * 54.85355 * 12 11 10 14 14 C 1.53036 * 109.54042 * 298.51243 * 13 12 11 15 15 C 1.46922 * 120.63742 * 173.94632 * 10 8 7 16 16 H 1.08998 * 109.59070 * 113.79299 * 15 10 8 17 17 C 1.53005 * 109.58329 * 353.51249 * 15 10 8 18 18 H 1.08997 * 110.88893 * 55.47427 * 17 15 10 19 19 C 1.55163 * 111.00341 * 291.54918 * 17 15 10 20 20 C 1.54327 * 102.93960 * 206.42221 * 19 17 15 21 21 N 1.47022 * 107.27018 * 22.19997 * 20 19 17 22 22 C 1.36935 * 125.64465 * 181.02632 * 21 20 19 23 23 H 1.08001 * 120.00010 * 180.02562 * 22 21 20 24 24 C 1.38809 * 120.00402 * 0.03218 * 22 21 20 25 25 N 1.31620 * 119.99834 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00384 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46829 * 60.00081 * 26 24 22 28 28 H 1.48502 * 109.47074 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46865 * 299.99939 * 26 24 22 30 30 C 1.47424 * 108.70635 * 1.05227 * 21 20 19 31 31 H 1.09001 * 109.47211 * 90.03009 * 1 2 3 32 32 H 1.09004 * 109.46787 * 210.02388 * 1 2 3 33 33 H 1.08998 * 109.47596 * 330.02263 * 1 2 3 34 34 H 1.07994 * 125.99158 * 359.95822 * 3 2 1 35 35 H 1.08004 * 125.64771 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47350 * 24.97031 * 7 6 5 37 37 H 1.09003 * 109.47361 * 144.97313 * 7 6 5 38 38 H 1.09004 * 109.58749 * 246.19754 * 11 10 8 39 39 H 1.08990 * 109.59256 * 6.63139 * 11 10 8 40 40 H 1.09003 * 109.63710 * 294.86410 * 12 11 10 41 41 H 1.09000 * 109.43559 * 174.72318 * 12 11 10 42 42 H 1.09000 * 109.45991 * 178.48841 * 13 12 11 43 43 H 1.08999 * 109.45914 * 58.53492 * 13 12 11 44 44 H 1.09002 * 109.49720 * 301.41211 * 14 13 12 45 45 H 1.08994 * 109.49729 * 181.31784 * 14 13 12 46 46 H 1.08997 * 110.71963 * 324.79054 * 19 17 15 47 47 H 1.09006 * 110.71547 * 88.06330 * 19 17 15 48 48 H 1.08995 * 109.88093 * 262.77418 * 20 19 17 49 49 H 1.09006 * 110.00502 * 141.68369 * 20 19 17 50 50 H 0.96999 * 120.00194 * 179.97438 * 25 24 22 51 51 H 1.08997 * 110.36744 * 217.04245 * 30 21 20 52 52 H 1.09000 * 110.45913 * 94.75990 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 0.0068 5 6 3.5968 -0.6507 0.0053 6 7 2.3230 -1.0991 -0.0030 7 6 1.8945 -2.4999 -0.0067 8 6 1.6373 -2.9429 -1.4240 9 8 1.7968 -2.1650 -2.3408 10 7 1.2301 -4.2032 -1.6729 11 6 1.1653 -5.1961 -0.5917 12 6 -0.2448 -5.8053 -0.5718 13 6 -0.5725 -6.3641 -1.9584 14 6 -0.5528 -5.2295 -2.9852 15 6 0.8485 -4.6123 -3.0314 16 1 1.5600 -5.3487 -3.4048 17 6 0.8439 -3.3906 -3.9526 18 1 1.8080 -2.8826 -3.9292 19 6 -0.3071 -2.4185 -3.5815 20 6 -0.5914 -1.6947 -4.9145 21 7 -0.0931 -2.5582 -5.9950 22 6 -0.1367 -2.2683 -7.3326 23 1 0.2572 -2.9721 -8.0508 24 6 -0.6871 -1.0697 -7.7655 25 7 -1.1666 -0.2116 -6.8902 26 14 -0.7473 -0.6746 -9.5902 27 1 -1.5443 -1.7106 -10.2949 28 1 -1.3788 0.6548 -9.7882 29 1 0.6328 -0.6541 -10.1380 30 6 0.4608 -3.7881 -5.4000 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 1.9864 2.1117 -0.0006 35 1 4.4819 -1.2697 0.0093 36 1 2.6762 -3.1202 0.4316 37 1 0.9797 -2.6016 0.5773 38 1 1.9021 -5.9793 -0.7702 39 1 1.3687 -4.7109 0.3628 40 1 -0.9720 -5.0373 -0.3080 41 1 -0.2820 -6.6098 0.1627 42 1 -1.5619 -6.8212 -1.9412 43 1 0.1692 -7.1144 -2.2321 44 1 -1.2770 -4.4669 -2.6987 45 1 -0.8092 -5.6241 -3.9683 46 1 -1.1854 -2.9706 -3.2473 47 1 0.0174 -1.7099 -2.8194 48 1 -0.0707 -0.7373 -4.9348 49 1 -1.6635 -1.5359 -5.0313 50 1 -1.5508 0.6261 -7.1926 51 1 1.3439 -4.1116 -5.9509 52 1 -0.2900 -4.5782 -5.3903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039229610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:22 Heat of formation + Delta-G solvation = 64.502589 kcal Electronic energy + Delta-G solvation = -32898.365916 eV Core-core repulsion = 28900.034840 eV Total energy + Delta-G solvation = -3998.331076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.08955 -41.78847 -38.96672 -38.17568 -35.38219 -34.59465 -33.79882 -32.83859 -32.55191 -30.66465 -29.08075 -28.81620 -27.30994 -26.57837 -25.53812 -24.36264 -22.44930 -22.24737 -22.09468 -21.43274 -20.59785 -19.74971 -18.94835 -18.05456 -17.85334 -16.92218 -16.80348 -16.54350 -16.40314 -15.93479 -15.64278 -15.39573 -15.09857 -14.89816 -14.67917 -14.64146 -14.34576 -14.17250 -13.99178 -13.90020 -13.83169 -13.68636 -13.50886 -13.21902 -13.10398 -12.93363 -12.86093 -12.69699 -12.27729 -12.09327 -12.06595 -11.86636 -11.66964 -11.60274 -11.47817 -11.29825 -11.16485 -10.92152 -10.79557 -10.70058 -9.85030 -9.45078 -9.19660 -8.88291 -7.86609 -5.23010 1.00944 1.39276 1.44732 1.50902 1.57932 1.74205 2.13274 2.26085 2.46944 3.29228 3.39803 3.68454 3.77603 3.78633 3.84989 3.89427 3.93238 4.00621 4.07979 4.11758 4.20785 4.27463 4.29848 4.33551 4.44317 4.53897 4.57511 4.68723 4.71952 4.72504 4.78559 4.86777 4.91185 4.91613 5.01025 5.04112 5.15411 5.17436 5.22029 5.30225 5.33142 5.40825 5.43696 5.52794 5.56853 5.67149 5.73950 5.83080 5.84676 6.17134 6.27031 6.50094 7.07215 7.14897 7.26111 7.76671 8.43069 9.23705 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009353 B = 0.004132 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.091450 B = 6774.794117 C = 8959.355725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.065 4.065 4 N -0.535 5.535 5 C 0.184 3.816 6 N -0.441 5.441 7 C 0.087 3.913 8 C 0.481 3.519 9 O -0.543 6.543 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.131 4.131 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.171 3.829 16 H 0.082 0.918 17 C -0.082 4.082 18 H 0.084 0.916 19 C -0.109 4.109 20 C 0.197 3.803 21 N -0.626 5.626 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.982 3.018 27 H -0.271 1.271 28 H -0.293 1.293 29 H -0.278 1.278 30 C 0.129 3.871 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.233 0.767 36 H 0.165 0.835 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.067 0.933 48 H -0.012 1.012 49 H -0.003 1.003 50 H 0.245 0.755 51 H 0.029 0.971 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -15.932 24.137 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C -0.211 4.211 4 N -0.253 5.253 5 C -0.098 4.098 6 N -0.125 5.125 7 C -0.038 4.038 8 C 0.268 3.732 9 O -0.421 6.421 10 N -0.333 5.333 11 C -0.022 4.022 12 C -0.169 4.169 13 C -0.153 4.153 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.100 0.900 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.146 4.146 20 C 0.072 3.928 21 N -0.352 5.352 22 C -0.376 4.376 23 H 0.100 0.900 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.809 3.191 27 H -0.197 1.197 28 H -0.219 1.219 29 H -0.204 1.204 30 C 0.003 3.997 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.186 0.814 35 H 0.249 0.751 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.015 0.985 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.227 -15.004 23.535 28.229 hybrid contribution -0.903 0.573 -1.829 2.119 sum 3.325 -14.430 21.706 26.277 Atomic orbital electron populations 1.20262 0.85939 1.04812 1.02161 1.21506 0.95450 0.86882 1.08856 1.22257 0.88819 0.99391 1.10661 1.70169 1.23282 1.10714 1.21170 1.25427 0.88196 0.91534 1.04679 1.45006 1.06886 1.06347 1.54228 1.22097 1.06997 0.80038 0.94686 1.21291 0.77912 0.82205 0.91787 1.90876 1.51018 1.54521 1.45690 1.48145 1.65251 1.10160 1.09712 1.22278 0.98483 0.91725 0.89683 1.22002 0.96190 1.01437 0.97277 1.21517 1.02677 0.96609 0.94457 1.22093 0.95706 0.98803 1.00675 1.20974 0.96671 0.94602 0.81006 0.89984 1.22690 0.99905 0.94941 0.92617 0.89767 1.22934 0.97216 0.98154 0.96323 1.20725 0.94464 0.91536 0.86114 1.44769 1.70373 1.17954 1.02152 1.19488 1.33287 1.01904 0.82902 0.89986 1.25751 1.01229 0.96839 1.02532 1.70257 1.46468 1.10055 1.33591 0.85103 0.77882 0.76921 0.79152 1.19663 1.21931 1.20386 1.21946 0.95371 0.88790 0.93578 0.93041 0.89624 0.88451 0.81402 0.75108 0.81741 0.83604 0.89070 0.86724 0.91949 0.87848 0.91190 0.90713 0.92339 0.91668 0.91739 0.91472 0.99405 0.98523 0.94583 0.95298 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.17 71.23 0.72 -0.84 16 2 C -0.01 -0.32 6.95 40.95 0.28 -0.03 16 3 C -0.07 -1.99 11.79 83.52 0.98 -1.01 16 4 N -0.54 -17.13 11.25 -200.31 -2.25 -19.39 16 5 C 0.18 4.52 12.56 180.26 2.26 6.78 16 6 N -0.44 -9.74 2.24 -518.63 -1.16 -10.90 16 7 C 0.09 1.11 4.78 85.63 0.41 1.52 16 8 C 0.48 10.64 6.97 87.66 0.61 11.25 16 9 O -0.54 -19.29 10.06 -3.04 -0.03 -19.33 16 10 N -0.60 -10.46 2.95 -794.21 -2.34 -12.81 16 11 C 0.10 0.64 6.38 86.51 0.55 1.19 16 12 C -0.13 -0.93 6.10 30.82 0.19 -0.74 16 13 C -0.12 -1.42 5.88 30.62 0.18 -1.24 16 14 C -0.13 -2.92 4.73 30.67 0.14 -2.77 16 15 C 0.17 4.17 2.79 44.98 0.13 4.29 16 16 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 17 C -0.08 -3.09 2.12 -9.40 -0.02 -3.11 16 18 H 0.08 3.76 5.75 -17.16 -0.10 3.66 16 19 C -0.11 -4.56 5.35 31.79 0.17 -4.39 16 20 C 0.20 11.14 5.38 86.73 0.47 11.61 16 21 N -0.63 -35.83 3.39 -691.99 -2.35 -38.18 16 22 C -0.25 -15.12 10.28 84.03 0.86 -14.26 16 23 H 0.08 4.75 7.83 -2.91 -0.02 4.73 16 24 C -0.07 -4.39 5.49 84.86 0.47 -3.93 16 25 N -0.95 -62.88 10.31 21.65 0.22 -62.66 16 26 Si 0.98 49.08 29.55 68.60 2.03 51.11 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 29 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 30 C 0.13 5.71 6.61 86.86 0.57 6.28 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.29 7.33 -2.38 -0.02 1.27 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.23 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.17 0.58 7.67 -2.39 -0.02 0.56 16 37 H 0.15 1.00 7.15 -2.39 -0.02 0.98 16 38 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.11 -0.03 5.93 -2.39 -0.01 -0.04 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 1.49 5.69 -2.39 -0.01 1.47 16 45 H 0.06 1.62 6.49 -2.39 -0.02 1.60 16 46 H 0.06 2.46 5.40 -2.39 -0.01 2.44 16 47 H 0.07 2.88 5.71 -2.38 -0.01 2.87 16 48 H -0.01 -0.82 7.38 -2.39 -0.02 -0.84 16 49 H 0.00 -0.21 7.50 -2.38 -0.02 -0.23 16 50 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 51 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 52 H 0.03 1.33 6.08 -2.39 -0.01 1.31 16 Total: -1.00 -92.45 389.03 3.93 -88.51 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.83 Total: 13.02 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 8.99 Total: 10.61 kcal Atomic # 7 Polarization: -136.04 SS G_CDS: -7.89 Total: -143.93 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.03 Total: -19.33 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.11 kcal Total: -92.45 3.93 -88.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039229610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.015 kcal (2) G-P(sol) polarization free energy of solvation -92.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds