Wall clock time and date at job start Wed Apr 1 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34672 * 126.58740 * 2 1 4 4 N 1.34134 * 108.01698 * 180.20800 * 3 2 1 5 5 C 1.30498 * 109.25264 * 359.61742 * 4 3 2 6 6 N 1.35038 * 108.70405 * 0.38623 * 5 4 3 7 7 C 1.46502 * 126.39985 * 179.76686 * 6 5 4 8 8 C 1.50699 * 109.46927 * 264.99800 * 7 6 5 9 9 O 1.21284 * 120.00074 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00453 * 180.02562 * 8 7 6 11 11 C 1.46935 * 120.62639 * 353.53349 * 10 8 7 12 12 C 1.52761 * 109.00848 * 233.58587 * 11 10 8 13 13 C 1.53036 * 109.38286 * 305.58734 * 12 11 10 14 14 C 1.53042 * 109.53874 * 61.24538 * 13 12 11 15 15 C 1.46921 * 120.63781 * 173.81993 * 10 8 7 16 16 H 1.09000 * 109.58329 * 246.29627 * 15 10 8 17 17 C 1.53003 * 109.58531 * 6.57659 * 15 10 8 18 18 H 1.08998 * 110.64023 * 47.86163 * 17 15 10 19 19 C 1.55149 * 110.71920 * 171.00355 * 17 15 10 20 20 C 1.55133 * 101.48587 * 153.73480 * 19 17 15 21 21 N 1.47422 * 104.93886 * 323.22425 * 20 19 17 22 22 C 1.36946 * 125.64533 * 203.96880 * 21 20 19 23 23 H 1.08001 * 119.99893 * 165.51327 * 22 21 20 24 24 C 1.38807 * 119.99605 * 345.51143 * 22 21 20 25 25 N 1.31618 * 120.00468 * 350.63994 * 24 22 21 26 26 Si 1.86805 * 119.99719 * 170.64558 * 24 22 21 27 27 H 1.48506 * 109.47259 * 94.96112 * 26 24 22 28 28 H 1.48496 * 109.46966 * 214.96098 * 26 24 22 29 29 H 1.48499 * 109.46808 * 334.96230 * 26 24 22 30 30 C 1.47025 * 108.70698 * 23.99910 * 21 20 19 31 31 H 1.09003 * 109.46959 * 90.02293 * 1 2 3 32 32 H 1.08999 * 109.47217 * 210.02398 * 1 2 3 33 33 H 1.08996 * 109.47440 * 330.02617 * 1 2 3 34 34 H 1.07996 * 125.99127 * 359.94377 * 3 2 1 35 35 H 1.08008 * 125.64743 * 180.14580 * 5 4 3 36 36 H 1.09000 * 109.47218 * 24.99499 * 7 6 5 37 37 H 1.08996 * 109.47665 * 144.99717 * 7 6 5 38 38 H 1.09001 * 109.58407 * 353.42295 * 11 10 8 39 39 H 1.08996 * 109.58407 * 113.84526 * 11 10 8 40 40 H 1.08999 * 109.56184 * 185.55128 * 12 11 10 41 41 H 1.09004 * 109.38420 * 65.51872 * 12 11 10 42 42 H 1.09002 * 109.46316 * 301.22219 * 13 12 11 43 43 H 1.09004 * 109.45455 * 181.26103 * 13 12 11 44 44 H 1.08996 * 109.49718 * 178.68319 * 14 13 12 45 45 H 1.08998 * 109.49933 * 58.57522 * 14 13 12 46 46 H 1.08997 * 111.00599 * 271.93538 * 19 17 15 47 47 H 1.09000 * 111.00793 * 35.79241 * 19 17 15 48 48 H 1.08993 * 110.41774 * 204.29293 * 20 19 17 49 49 H 1.08998 * 110.20476 * 82.04072 * 20 19 17 50 50 H 0.97003 * 120.00357 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.88293 * 239.52345 * 30 21 20 52 52 H 1.08999 * 110.00388 * 118.43242 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 -0.0046 5 6 3.5968 -0.6507 0.0007 6 7 2.3230 -1.0990 0.0004 7 6 1.8943 -2.4999 0.0006 8 6 1.6294 -2.9443 -1.4148 9 8 1.7830 -2.1672 -2.3332 10 7 1.2208 -4.2050 -1.6601 11 6 1.1645 -5.1975 -0.5781 12 6 1.9593 -6.4337 -0.9951 13 6 1.4392 -6.9414 -2.3418 14 6 1.6328 -5.8590 -3.4063 15 6 0.8291 -4.6147 -3.0155 16 1 -0.2363 -4.8446 -3.0342 17 6 1.1266 -3.4819 -3.9999 18 1 2.1348 -3.0963 -3.8486 19 6 0.9363 -3.9619 -5.4630 20 6 0.5998 -2.6300 -6.1837 21 7 -0.2197 -1.8729 -5.2201 22 6 -1.1151 -0.8860 -5.5360 23 1 -1.8327 -0.5526 -4.8010 24 6 -1.1001 -0.3143 -6.8008 25 7 -0.1168 -0.5836 -7.6332 26 14 -2.4756 0.8375 -7.3214 27 1 -2.0672 2.2426 -7.0681 28 1 -2.7522 0.6556 -8.7690 29 1 -3.7008 0.5298 -6.5408 30 6 0.0839 -2.3524 -3.8638 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9864 2.1118 -0.0009 35 1 4.4819 -1.2697 0.0011 36 1 2.6785 -3.1198 0.4352 37 1 0.9829 -2.6010 0.5897 38 1 1.5979 -4.7748 0.3284 39 1 0.1277 -5.4783 -0.3934 40 1 1.8425 -7.2135 -0.2425 41 1 3.0134 -6.1720 -1.0873 42 1 0.3791 -7.1800 -2.2552 43 1 1.9904 -7.8366 -2.6298 44 1 1.2837 -6.2298 -4.3699 45 1 2.6898 -5.6021 -3.4759 46 1 1.8552 -4.3992 -5.8534 47 1 0.1076 -4.6658 -5.5386 48 1 0.0330 -2.8232 -7.0945 49 1 1.5151 -2.0848 -6.4140 50 1 -0.1062 -0.1838 -8.5169 51 1 -0.8216 -2.7382 -3.3956 52 1 0.4938 -1.5397 -3.2641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039229613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:33 Heat of formation + Delta-G solvation = 63.178076 kcal Electronic energy + Delta-G solvation = -32869.218266 eV Core-core repulsion = 28870.829755 eV Total energy + Delta-G solvation = -3998.388511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.09912 -41.75141 -38.83409 -38.30372 -35.37456 -34.61889 -33.83213 -32.86139 -32.64788 -30.63051 -29.41151 -28.50028 -27.32719 -26.72758 -25.45715 -24.03959 -22.71114 -22.33884 -21.76362 -21.08209 -20.96959 -20.05507 -19.00417 -18.11728 -17.89658 -17.10269 -16.69556 -16.51367 -16.27028 -15.91255 -15.62160 -15.40711 -15.18954 -14.89186 -14.68833 -14.54791 -14.29457 -14.17402 -13.96648 -13.87804 -13.72803 -13.69929 -13.49109 -13.27618 -13.20057 -13.11119 -12.76854 -12.66429 -12.38549 -12.08603 -12.02924 -11.89165 -11.71065 -11.61566 -11.44621 -11.39102 -11.20983 -10.94423 -10.80432 -10.67313 -9.89880 -9.48897 -9.21288 -8.74790 -7.90941 -5.25707 0.99652 1.39091 1.42348 1.51852 1.58093 1.73939 2.13038 2.24865 2.47051 3.26495 3.39896 3.71995 3.76228 3.78937 3.82038 3.86692 3.91275 3.99928 4.07961 4.12887 4.17599 4.25686 4.27554 4.35710 4.43836 4.52708 4.60843 4.65557 4.69493 4.72368 4.77275 4.85315 4.92398 4.97150 5.01127 5.02000 5.13473 5.16499 5.20936 5.27400 5.31507 5.39766 5.42232 5.52671 5.56757 5.63121 5.67937 5.77308 5.81953 6.20284 6.26194 6.49387 7.06170 7.13447 7.29673 7.77411 8.46905 9.22344 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.004697 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.331591 B = 5960.159228 C = 8537.377370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.013 4.013 3 C -0.064 4.064 4 N -0.535 5.535 5 C 0.185 3.815 6 N -0.442 5.442 7 C 0.089 3.911 8 C 0.469 3.531 9 O -0.534 6.534 10 N -0.602 5.602 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.124 4.124 15 C 0.168 3.832 16 H 0.068 0.932 17 C -0.068 4.068 18 H 0.077 0.923 19 C -0.129 4.129 20 C 0.183 3.817 21 N -0.625 5.625 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.978 3.022 27 H -0.288 1.288 28 H -0.288 1.288 29 H -0.265 1.265 30 C 0.152 3.848 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.233 0.767 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.022 0.978 49 H -0.018 1.018 50 H 0.248 0.752 51 H -0.001 1.001 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -17.332 22.931 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C -0.210 4.210 4 N -0.253 5.253 5 C -0.098 4.098 6 N -0.125 5.125 7 C -0.036 4.036 8 C 0.256 3.744 9 O -0.412 6.412 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.162 4.162 15 C 0.064 3.936 16 H 0.086 0.914 17 C -0.087 4.087 18 H 0.095 0.905 19 C -0.167 4.167 20 C 0.058 3.942 21 N -0.351 5.351 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.259 4.259 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.215 1.215 28 H -0.214 1.214 29 H -0.189 1.189 30 C 0.028 3.972 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.186 0.814 35 H 0.249 0.751 36 H 0.182 0.818 37 H 0.162 0.838 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.041 0.959 49 H 0.000 1.000 50 H 0.057 0.943 51 H 0.017 0.983 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.316 -16.433 22.320 28.051 hybrid contribution -1.180 0.833 -1.339 1.969 sum 3.136 -15.600 20.980 26.332 Atomic orbital electron populations 1.20233 0.86054 1.04784 1.01936 1.21495 0.95422 0.86961 1.08899 1.22244 0.88821 0.99347 1.10633 1.70161 1.23261 1.10734 1.21170 1.25419 0.88169 0.91523 1.04641 1.45013 1.06898 1.06366 1.54212 1.22068 1.06858 0.79935 0.94736 1.21342 0.78870 0.82243 0.91914 1.90916 1.50178 1.54677 1.45392 1.48103 1.65741 1.09932 1.09891 1.22071 1.02409 0.88775 0.88990 1.21846 0.99831 0.97459 0.97692 1.21532 1.02146 0.97349 0.94459 1.21926 0.99830 0.94257 1.00196 1.21147 0.98265 0.93554 0.80587 0.91399 1.22272 0.99686 0.93612 0.93111 0.90535 1.23020 1.00972 0.96533 0.96221 1.21072 0.91945 0.89324 0.91856 1.44899 1.46782 1.40938 1.02514 1.19355 1.08114 1.11951 0.97897 0.91138 1.25765 1.00744 1.01636 0.97795 1.70191 1.33045 1.48792 1.07954 0.85077 0.78914 0.78229 0.77220 1.21465 1.21430 1.18946 1.21907 0.93289 0.95911 0.86062 0.93423 0.89681 0.88365 0.81405 0.75073 0.81801 0.83776 0.86834 0.89783 0.87842 0.91700 0.91215 0.90514 0.90761 0.92302 0.90324 0.91166 0.95912 0.99966 0.94343 0.98295 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.18 71.24 0.72 -0.95 16 2 C -0.01 -0.36 6.95 40.95 0.28 -0.08 16 3 C -0.06 -2.07 11.79 83.52 0.98 -1.08 16 4 N -0.53 -17.87 11.25 -200.31 -2.25 -20.12 16 5 C 0.18 4.79 12.56 180.26 2.26 7.05 16 6 N -0.44 -10.45 2.24 -518.62 -1.16 -11.61 16 7 C 0.09 1.28 4.85 85.63 0.42 1.69 16 8 C 0.47 11.17 7.41 87.66 0.65 11.82 16 9 O -0.53 -19.97 9.18 -3.04 -0.03 -20.00 16 10 N -0.60 -11.36 2.98 -795.83 -2.37 -13.73 16 11 C 0.10 0.75 6.29 86.22 0.54 1.30 16 12 C -0.13 -0.88 6.06 30.53 0.19 -0.70 16 13 C -0.12 -1.31 5.88 30.62 0.18 -1.13 16 14 C -0.12 -2.35 4.88 30.67 0.15 -2.20 16 15 C 0.17 4.22 2.47 44.98 0.11 4.33 16 16 H 0.07 1.79 7.84 -2.39 -0.02 1.77 16 17 C -0.07 -2.54 1.86 -9.61 -0.02 -2.56 16 18 H 0.08 3.26 6.11 -2.46 -0.01 3.25 16 19 C -0.13 -5.11 5.20 32.06 0.17 -4.94 16 20 C 0.18 10.12 5.37 86.93 0.47 10.59 16 21 N -0.63 -36.31 3.39 -691.55 -2.35 -38.66 16 22 C -0.24 -15.16 10.21 84.03 0.86 -14.30 16 23 H 0.07 4.24 7.85 -2.91 -0.02 4.22 16 24 C -0.07 -4.10 5.38 84.86 0.46 -3.65 16 25 N -0.95 -62.32 10.87 21.65 0.24 -62.09 16 26 Si 0.98 49.03 29.56 68.60 2.03 51.06 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 30 C 0.15 7.25 5.79 86.73 0.50 7.75 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.45 7.33 -2.39 -0.02 1.43 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.16 0.81 7.41 -2.39 -0.02 0.79 16 37 H 0.14 1.22 7.35 -2.39 -0.02 1.20 16 38 H 0.11 0.12 5.97 -2.39 -0.01 0.10 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 1.48 7.21 -2.39 -0.02 1.46 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 47 H 0.07 2.56 7.90 -2.39 -0.02 2.54 16 48 H 0.02 1.36 7.25 -2.39 -0.02 1.34 16 49 H -0.02 -1.10 7.97 -2.39 -0.02 -1.12 16 50 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.00 -0.04 7.62 -2.39 -0.02 -0.05 16 52 H 0.04 2.00 5.40 -31.18 -0.17 1.83 16 Total: -1.00 -92.55 394.86 3.77 -88.78 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.75 Total: 13.43 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 8.92 Total: 12.94 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -7.90 Total: -146.20 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.03 Total: -20.00 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.03 Total: 51.06 kcal Total: -92.55 3.77 -88.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039229613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.955 kcal (2) G-P(sol) polarization free energy of solvation -92.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds