Wall clock time and date at job start Wed Apr 1 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34676 * 125.98851 * 2 1 4 4 N 1.36879 * 106.81694 * 179.71949 * 3 2 1 5 5 C 1.46504 * 126.39503 * 180.25099 * 4 3 2 6 6 C 1.53001 * 109.47287 * 309.20601 * 5 4 3 7 7 C 1.53001 * 109.47166 * 69.20568 * 5 4 3 8 8 C 1.50704 * 109.46950 * 189.20509 * 5 4 3 9 9 O 1.21277 * 120.00060 * 231.15747 * 8 5 4 10 10 N 1.34776 * 119.99851 * 51.15485 * 8 5 4 11 11 C 1.46949 * 120.44260 * 4.49422 * 10 8 5 12 12 C 1.54069 * 108.29828 * 125.72048 * 11 10 8 13 13 H 1.08998 * 111.00763 * 172.56112 * 12 11 10 14 14 C 1.53372 * 108.83494 * 294.50916 * 12 11 10 15 15 C 1.53009 * 109.25249 * 60.25606 * 14 12 11 16 16 C 1.53004 * 109.79766 * 60.57982 * 15 14 12 17 17 C 1.53375 * 109.27674 * 299.44041 * 16 15 14 18 18 H 1.09000 * 110.59350 * 178.09814 * 17 16 15 19 19 C 1.46948 * 120.43917 * 184.76254 * 10 8 5 20 20 N 1.47563 * 107.69834 * 51.33344 * 12 11 10 21 21 C 1.36940 * 121.61023 * 120.35098 * 20 12 11 22 22 H 1.07992 * 119.99964 * 335.32391 * 21 20 12 23 23 C 1.38807 * 120.00362 * 155.32060 * 21 20 12 24 24 N 1.31627 * 119.99839 * 336.32233 * 23 21 20 25 25 Si 1.86794 * 120.00410 * 156.31823 * 23 21 20 26 26 H 1.48499 * 109.47325 * 94.99926 * 25 23 21 27 27 H 1.48499 * 109.47426 * 215.00300 * 25 23 21 28 28 H 1.48497 * 109.47164 * 334.99894 * 25 23 21 29 29 C 1.35040 * 107.20644 * 0.41342 * 4 3 2 30 30 N 1.30502 * 108.69822 * 359.57928 * 29 4 3 31 31 H 1.09003 * 109.46671 * 269.99645 * 1 2 3 32 32 H 1.08994 * 109.47323 * 30.00010 * 1 2 3 33 33 H 1.09001 * 109.46661 * 150.00430 * 1 2 3 34 34 H 1.08000 * 126.58888 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.47158 * 65.27904 * 6 5 4 36 36 H 1.09003 * 109.46868 * 185.28187 * 6 5 4 37 37 H 1.09006 * 109.47111 * 305.28080 * 6 5 4 38 38 H 1.09007 * 109.46807 * 64.84083 * 7 5 4 39 39 H 1.08999 * 109.47184 * 184.84221 * 7 5 4 40 40 H 1.08999 * 109.47190 * 304.84880 * 7 5 4 41 41 H 1.08996 * 109.62043 * 245.48667 * 11 10 8 42 42 H 1.09000 * 109.62276 * 6.04687 * 11 10 8 43 43 H 1.08999 * 109.50448 * 300.32581 * 14 12 11 44 44 H 1.09002 * 109.50702 * 180.19384 * 14 12 11 45 45 H 1.08997 * 109.41693 * 300.48036 * 15 14 12 46 46 H 1.09003 * 109.36195 * 180.64210 * 15 14 12 47 47 H 1.08998 * 109.50631 * 179.49732 * 16 15 14 48 48 H 1.08998 * 109.53764 * 59.39865 * 16 15 14 49 49 H 1.08994 * 109.63010 * 353.97092 * 19 10 8 50 50 H 1.09004 * 109.62384 * 114.54537 * 19 10 8 51 51 H 0.96999 * 119.99998 * 180.02562 * 24 23 21 52 52 H 1.07997 * 125.65011 * 179.84158 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6402 0.0064 5 6 4.7996 1.4686 0.0140 6 6 4.7107 2.5105 -1.1030 7 6 4.9234 2.1777 1.3641 8 6 6.0082 0.5961 -0.2079 9 8 6.9536 0.6660 0.5485 10 7 6.0383 -0.2618 -1.2469 11 6 4.9421 -0.2852 -2.2252 12 6 5.5448 -0.1028 -3.6314 13 1 4.7874 -0.2435 -4.4024 14 6 6.1598 1.2989 -3.7286 15 6 7.2592 1.4417 -2.6741 16 6 8.3532 0.4011 -2.9218 17 6 7.7471 -1.0043 -2.8222 18 1 8.5020 -1.7630 -3.0285 19 6 7.1650 -1.1905 -1.4131 20 7 6.6319 -1.0888 -3.7848 21 6 6.6068 -2.0368 -4.7727 22 1 5.6643 -2.3504 -5.1964 23 6 7.7929 -2.5947 -5.2297 24 7 8.9252 -1.9378 -5.0917 25 14 7.7823 -4.2776 -6.0403 26 1 7.7035 -4.1165 -7.5144 27 1 9.0281 -5.0048 -5.6877 28 1 6.6068 -5.0494 -5.5632 29 6 3.5450 -0.7094 0.0008 30 7 2.2952 -1.0852 0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8901 -0.5138 34 1 1.9750 2.1202 -0.0004 35 1 3.8926 3.1995 -0.8929 36 1 5.6476 3.0648 -1.1581 37 1 4.5286 2.0093 -2.0537 38 1 5.0730 1.4379 2.1506 39 1 5.7735 2.8594 1.3399 40 1 4.0117 2.7408 1.5637 41 1 4.4209 -1.2407 -2.1682 42 1 4.2466 0.5274 -2.0152 43 1 5.3877 2.0480 -3.5531 44 1 6.5868 1.4410 -4.7213 45 1 6.8324 1.2897 -1.6827 46 1 7.6898 2.4413 -2.7340 47 1 9.1379 0.5128 -2.1736 48 1 8.7753 0.5456 -3.9163 49 1 7.9311 -0.9736 -0.6688 50 1 6.8149 -2.2158 -1.2941 51 1 9.7540 -2.3275 -5.4113 52 1 4.4005 -1.3685 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039677654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:07 Heat of formation + Delta-G solvation = 103.249981 kcal Electronic energy + Delta-G solvation = -34515.177465 eV Core-core repulsion = 30518.526602 eV Total energy + Delta-G solvation = -3996.650863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.72372 -40.74824 -38.17054 -35.97587 -34.18897 -32.97803 -31.98031 -31.82920 -30.67143 -30.32183 -27.66764 -27.38427 -26.78296 -25.65531 -24.25445 -22.88818 -22.01039 -21.44092 -21.07257 -20.14292 -19.43922 -18.37746 -17.75852 -16.79590 -16.01048 -15.53368 -15.36456 -15.03145 -14.70896 -14.55955 -14.15055 -13.96110 -13.85352 -13.63542 -13.53057 -13.24928 -13.04221 -12.93383 -12.71552 -12.54252 -12.49826 -12.43893 -12.29896 -12.07917 -12.00595 -11.88645 -11.63992 -11.29027 -11.12305 -11.03686 -10.67672 -10.40276 -10.30218 -10.10324 -10.06713 -9.94142 -9.82272 -9.61118 -9.53914 -9.25522 -8.58446 -8.28541 -8.06409 -6.76062 -5.91112 -3.28148 2.03661 2.16960 2.96854 3.01902 3.15868 3.32357 3.41627 3.44592 4.08341 4.39511 4.47293 4.57621 4.63205 4.78602 4.99460 5.18969 5.22393 5.23565 5.27956 5.36422 5.42582 5.47397 5.53191 5.54172 5.61397 5.66547 5.71723 5.75862 5.79424 5.83832 5.87869 5.91954 5.97206 6.06522 6.16371 6.24966 6.29301 6.34443 6.36993 6.47453 6.57835 6.72943 6.77306 6.81521 6.95467 6.99377 7.14261 7.36907 7.46115 7.60194 7.71446 8.13042 8.14358 8.25754 9.04622 9.68635 10.28107 11.16143 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.004437 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.458368 B = 6309.028147 C = 7315.696503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.003 4.003 3 C -0.055 4.055 4 N -0.449 5.449 5 C 0.144 3.856 6 C -0.175 4.175 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.579 5.579 11 C 0.077 3.923 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.113 4.113 17 C 0.179 3.821 18 H 0.116 0.884 19 C 0.088 3.912 20 N -0.575 5.575 21 C -0.254 4.254 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.891 5.891 25 Si 0.897 3.103 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.278 1.278 29 C 0.196 3.804 30 N -0.489 5.489 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.031 0.969 47 H 0.038 0.962 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.254 0.746 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 9.774 9.650 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.187 4.187 4 N -0.134 5.134 5 C 0.056 3.944 6 C -0.232 4.232 7 C -0.197 4.197 8 C 0.299 3.701 9 O -0.408 6.408 10 N -0.311 5.311 11 C -0.047 4.047 12 C 0.045 3.955 13 H 0.097 0.903 14 C -0.167 4.167 15 C -0.177 4.177 16 C -0.152 4.152 17 C 0.071 3.929 18 H 0.134 0.866 19 C -0.035 4.035 20 N -0.296 5.296 21 C -0.383 4.383 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.535 5.535 25 Si 0.726 3.274 26 H -0.216 1.216 27 H -0.215 1.215 28 H -0.204 1.204 29 C -0.086 4.086 30 N -0.207 5.207 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.064 0.936 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.181 8.977 9.955 16.833 hybrid contribution 0.560 0.087 -0.648 0.860 sum -9.621 9.064 9.308 16.166 Atomic orbital electron populations 1.19986 0.87896 1.02502 1.01837 1.20706 0.96380 0.88558 1.07530 1.22271 0.82642 1.00317 1.13441 1.45670 1.05826 1.07369 1.54541 1.21128 0.82025 0.91600 0.99629 1.22713 1.04311 0.98133 0.98066 1.21971 1.03090 1.00952 0.93686 1.19787 0.87993 0.81060 0.81243 1.90729 1.36575 1.67213 1.46318 1.48314 1.23058 1.35666 1.24090 1.23091 0.88458 1.02249 0.90884 1.21281 0.92166 0.89341 0.92759 0.90345 1.22095 0.97576 0.97195 0.99860 1.22151 0.97365 0.97722 1.00430 1.21788 0.96069 0.95928 1.01438 1.21116 0.90776 0.96882 0.84082 0.86630 1.22658 0.88026 0.91333 1.01483 1.44432 1.20113 1.32858 1.32191 1.19113 0.92357 1.12900 1.13917 0.91352 1.24892 0.96117 0.99375 0.98877 1.70060 0.98487 1.35763 1.49165 0.86375 0.77205 0.84819 0.78978 1.21582 1.21538 1.20377 1.25043 0.97137 0.82006 1.04385 1.70252 1.00123 1.30212 1.20153 0.91773 0.91564 0.91267 0.81222 0.90689 0.89614 0.88839 0.91159 0.89783 0.91269 0.90759 0.89884 0.93953 0.91953 0.90548 0.94979 0.94350 0.90866 0.89880 0.91563 0.93567 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.42 36.01 0.38 -0.24 16 2 C 0.00 -0.04 7.09 -82.85 -0.59 -0.62 16 3 C -0.05 -0.61 10.56 -16.56 -0.17 -0.79 16 4 N -0.45 -5.61 1.47 -105.82 -0.16 -5.76 16 5 C 0.14 1.75 0.79 -132.97 -0.10 1.65 16 6 C -0.18 -1.85 6.70 37.16 0.25 -1.60 16 7 C -0.14 -1.49 7.98 37.16 0.30 -1.19 16 8 C 0.51 7.96 3.45 -10.98 -0.04 7.92 16 9 O -0.53 -9.64 15.38 5.56 0.09 -9.56 16 10 N -0.58 -9.42 0.73 -171.95 -0.13 -9.55 16 11 C 0.08 1.23 3.41 -3.24 -0.01 1.22 16 12 C 0.15 2.84 3.63 -66.60 -0.24 2.60 16 13 H 0.08 1.47 8.01 -51.93 -0.42 1.06 16 14 C -0.13 -2.22 5.10 -26.53 -0.14 -2.35 16 15 C -0.14 -2.45 4.73 -26.72 -0.13 -2.58 16 16 C -0.11 -2.33 5.58 -26.53 -0.15 -2.48 16 17 C 0.18 3.83 2.70 -66.85 -0.18 3.65 16 18 H 0.12 2.85 5.87 -51.93 -0.30 2.55 16 19 C 0.09 1.63 5.89 -3.49 -0.02 1.61 16 20 N -0.58 -12.80 2.54 -155.16 -0.39 -13.20 16 21 C -0.25 -6.41 9.69 -15.06 -0.15 -6.55 16 22 H 0.07 1.72 7.93 -52.49 -0.42 1.31 16 23 C 0.01 0.17 4.88 -17.43 -0.09 0.09 16 24 N -0.89 -23.89 11.31 55.49 0.63 -23.26 16 25 Si 0.90 20.68 29.61 -169.99 -5.03 15.65 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C 0.20 2.88 8.58 -90.38 -0.78 2.10 16 30 N -0.49 -7.56 11.25 -10.87 -0.12 -7.68 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.17 1.36 7.98 -52.49 -0.42 0.94 16 35 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 36 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 37 H 0.09 1.10 2.81 -51.93 -0.15 0.96 16 38 H 0.07 0.85 8.09 -51.92 -0.42 0.43 16 39 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 40 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 41 H 0.07 1.28 7.06 -51.93 -0.37 0.91 16 42 H 0.08 1.18 3.12 -51.93 -0.16 1.02 16 43 H 0.04 0.61 6.01 -51.93 -0.31 0.30 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.28 1.60 -52.43 -0.08 1.20 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 49 H 0.08 1.54 6.98 -51.93 -0.36 1.18 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 52 H 0.20 3.03 6.42 -52.49 -0.34 2.69 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -28.67 371.67 -9.27 -37.94 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.90 Total: 7.38 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.85 Total: 2.43 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.17 Total: -59.44 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.67 -9.27 -37.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039677654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.192 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds