Wall clock time and date at job start Wed Apr 1 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34676 * 125.98851 * 2 1 4 4 N 1.36879 * 106.81694 * 179.71949 * 3 2 1 5 5 C 1.46504 * 126.39503 * 180.25099 * 4 3 2 6 6 C 1.53001 * 109.47287 * 309.20601 * 5 4 3 7 7 C 1.53001 * 109.47166 * 69.20568 * 5 4 3 8 8 C 1.50704 * 109.46950 * 189.20509 * 5 4 3 9 9 O 1.21277 * 120.00060 * 231.15747 * 8 5 4 10 10 N 1.34776 * 119.99851 * 51.15485 * 8 5 4 11 11 C 1.46949 * 120.44260 * 4.49422 * 10 8 5 12 12 C 1.54069 * 108.29828 * 125.72048 * 11 10 8 13 13 H 1.08998 * 111.00763 * 172.56112 * 12 11 10 14 14 C 1.53372 * 108.83494 * 294.50916 * 12 11 10 15 15 C 1.53009 * 109.25249 * 60.25606 * 14 12 11 16 16 C 1.53004 * 109.79766 * 60.57982 * 15 14 12 17 17 C 1.53375 * 109.27674 * 299.44041 * 16 15 14 18 18 H 1.09000 * 110.59350 * 178.09814 * 17 16 15 19 19 C 1.46948 * 120.43917 * 184.76254 * 10 8 5 20 20 N 1.47563 * 107.69834 * 51.33344 * 12 11 10 21 21 C 1.36940 * 121.61023 * 120.35098 * 20 12 11 22 22 H 1.07992 * 119.99964 * 335.32391 * 21 20 12 23 23 C 1.38807 * 120.00362 * 155.32060 * 21 20 12 24 24 N 1.31627 * 119.99839 * 336.32233 * 23 21 20 25 25 Si 1.86794 * 120.00410 * 156.31823 * 23 21 20 26 26 H 1.48499 * 109.47325 * 94.99926 * 25 23 21 27 27 H 1.48499 * 109.47426 * 215.00300 * 25 23 21 28 28 H 1.48497 * 109.47164 * 334.99894 * 25 23 21 29 29 C 1.35040 * 107.20644 * 0.41342 * 4 3 2 30 30 N 1.30502 * 108.69822 * 359.57928 * 29 4 3 31 31 H 1.09003 * 109.46671 * 269.99645 * 1 2 3 32 32 H 1.08994 * 109.47323 * 30.00010 * 1 2 3 33 33 H 1.09001 * 109.46661 * 150.00430 * 1 2 3 34 34 H 1.08000 * 126.58888 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.47158 * 65.27904 * 6 5 4 36 36 H 1.09003 * 109.46868 * 185.28187 * 6 5 4 37 37 H 1.09006 * 109.47111 * 305.28080 * 6 5 4 38 38 H 1.09007 * 109.46807 * 64.84083 * 7 5 4 39 39 H 1.08999 * 109.47184 * 184.84221 * 7 5 4 40 40 H 1.08999 * 109.47190 * 304.84880 * 7 5 4 41 41 H 1.08996 * 109.62043 * 245.48667 * 11 10 8 42 42 H 1.09000 * 109.62276 * 6.04687 * 11 10 8 43 43 H 1.08999 * 109.50448 * 300.32581 * 14 12 11 44 44 H 1.09002 * 109.50702 * 180.19384 * 14 12 11 45 45 H 1.08997 * 109.41693 * 300.48036 * 15 14 12 46 46 H 1.09003 * 109.36195 * 180.64210 * 15 14 12 47 47 H 1.08998 * 109.50631 * 179.49732 * 16 15 14 48 48 H 1.08998 * 109.53764 * 59.39865 * 16 15 14 49 49 H 1.08994 * 109.63010 * 353.97092 * 19 10 8 50 50 H 1.09004 * 109.62384 * 114.54537 * 19 10 8 51 51 H 0.96999 * 119.99998 * 180.02562 * 24 23 21 52 52 H 1.07997 * 125.65011 * 179.84158 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6402 0.0064 5 6 4.7996 1.4686 0.0140 6 6 4.7107 2.5105 -1.1030 7 6 4.9234 2.1777 1.3641 8 6 6.0082 0.5961 -0.2079 9 8 6.9536 0.6660 0.5485 10 7 6.0383 -0.2618 -1.2469 11 6 4.9421 -0.2852 -2.2252 12 6 5.5448 -0.1028 -3.6314 13 1 4.7874 -0.2435 -4.4024 14 6 6.1598 1.2989 -3.7286 15 6 7.2592 1.4417 -2.6741 16 6 8.3532 0.4011 -2.9218 17 6 7.7471 -1.0043 -2.8222 18 1 8.5020 -1.7630 -3.0285 19 6 7.1650 -1.1905 -1.4131 20 7 6.6319 -1.0888 -3.7848 21 6 6.6068 -2.0368 -4.7727 22 1 5.6643 -2.3504 -5.1964 23 6 7.7929 -2.5947 -5.2297 24 7 8.9252 -1.9378 -5.0917 25 14 7.7823 -4.2776 -6.0403 26 1 7.7035 -4.1165 -7.5144 27 1 9.0281 -5.0048 -5.6877 28 1 6.6068 -5.0494 -5.5632 29 6 3.5450 -0.7094 0.0008 30 7 2.2952 -1.0852 0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8901 -0.5138 34 1 1.9750 2.1202 -0.0004 35 1 3.8926 3.1995 -0.8929 36 1 5.6476 3.0648 -1.1581 37 1 4.5286 2.0093 -2.0537 38 1 5.0730 1.4379 2.1506 39 1 5.7735 2.8594 1.3399 40 1 4.0117 2.7408 1.5637 41 1 4.4209 -1.2407 -2.1682 42 1 4.2466 0.5274 -2.0152 43 1 5.3877 2.0480 -3.5531 44 1 6.5868 1.4410 -4.7213 45 1 6.8324 1.2897 -1.6827 46 1 7.6898 2.4413 -2.7340 47 1 9.1379 0.5128 -2.1736 48 1 8.7753 0.5456 -3.9163 49 1 7.9311 -0.9736 -0.6688 50 1 6.8149 -2.2158 -1.2941 51 1 9.7540 -2.3275 -5.4113 52 1 4.4005 -1.3685 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039677654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:06 Heat of formation + Delta-G solvation = 89.594076 kcal Electronic energy + Delta-G solvation = -34515.769630 eV Core-core repulsion = 30518.526602 eV Total energy + Delta-G solvation = -3997.243027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.79007 -42.02847 -39.60797 -37.06155 -35.74470 -34.60470 -33.54380 -32.74568 -32.29705 -31.40587 -28.83043 -28.49452 -27.92923 -27.02463 -25.84495 -24.21281 -23.27480 -22.98199 -22.42677 -21.06526 -20.72940 -19.94833 -18.92718 -18.34585 -17.30148 -16.81153 -16.70185 -16.47552 -16.11860 -15.79365 -15.73157 -15.22708 -15.07835 -14.88461 -14.80624 -14.54468 -14.30860 -14.12557 -13.89603 -13.77596 -13.60746 -13.39831 -13.29033 -13.19739 -13.12769 -13.11845 -13.00498 -12.79332 -12.66460 -12.51124 -12.24090 -12.16571 -11.87702 -11.80818 -11.70384 -11.29727 -11.14582 -10.95699 -10.82829 -10.49113 -10.45983 -9.60573 -9.19519 -8.56223 -7.87142 -5.25201 1.01257 1.10506 1.44442 1.49637 1.57311 1.73023 1.89453 2.17385 2.50536 2.94215 3.25111 3.42649 3.54543 3.64650 3.69438 3.86979 4.01137 4.05663 4.13445 4.21166 4.26916 4.32513 4.38522 4.45270 4.51596 4.52794 4.60123 4.65048 4.65256 4.69729 4.74921 4.79230 4.82223 4.95641 4.99772 5.01958 5.04820 5.08955 5.14927 5.20571 5.22704 5.29193 5.33847 5.37696 5.47240 5.60012 5.68966 5.79091 5.92439 6.14273 6.26031 6.34800 6.84105 7.11664 7.16484 7.81340 8.38208 9.16884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.004437 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.458368 B = 6309.028147 C = 7315.696503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.028 4.028 3 C -0.034 4.034 4 N -0.445 5.445 5 C 0.151 3.849 6 C -0.175 4.175 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.557 6.557 10 N -0.580 5.580 11 C 0.098 3.902 12 C 0.144 3.856 13 H 0.077 0.923 14 C -0.119 4.119 15 C -0.133 4.133 16 C -0.107 4.107 17 C 0.179 3.821 18 H 0.078 0.922 19 C 0.100 3.900 20 N -0.590 5.590 21 C -0.257 4.257 22 H 0.066 0.934 23 C -0.039 4.039 24 N -0.916 5.916 25 Si 0.952 3.048 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.275 1.275 29 C 0.173 3.827 30 N -0.520 5.520 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.214 0.786 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.248 0.752 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 12.707 10.829 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 C -0.165 4.165 4 N -0.130 5.130 5 C 0.063 3.937 6 C -0.232 4.232 7 C -0.194 4.194 8 C 0.300 3.700 9 O -0.436 6.436 10 N -0.311 5.311 11 C -0.026 4.026 12 C 0.037 3.963 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.171 4.171 16 C -0.146 4.146 17 C 0.071 3.929 18 H 0.096 0.904 19 C -0.024 4.024 20 N -0.311 5.311 21 C -0.387 4.387 22 H 0.083 0.917 23 C -0.236 4.236 24 N -0.562 5.562 25 Si 0.781 3.219 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.200 1.200 29 C -0.109 4.109 30 N -0.239 5.239 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.057 0.943 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.086 11.925 11.147 20.921 hybrid contribution 1.404 -0.822 -0.955 1.886 sum -11.682 11.103 10.191 19.069 Atomic orbital electron populations 1.20064 0.85978 1.03257 1.02623 1.21298 0.97803 0.88365 1.08154 1.22900 0.81237 1.01759 1.10651 1.45706 1.06561 1.06598 1.54173 1.21172 0.80027 0.90870 1.01590 1.22765 1.06219 0.97933 0.96270 1.22005 1.04979 1.00572 0.91812 1.20478 0.88941 0.80554 0.80061 1.90723 1.38097 1.67891 1.46851 1.48242 1.22345 1.35646 1.24906 1.22887 0.88126 1.02655 0.88942 1.21512 0.91126 0.89286 0.94357 0.90525 1.21989 0.98227 0.97314 0.98207 1.22127 0.96508 0.97197 1.01230 1.21652 0.97075 0.96664 0.99185 1.20915 0.90178 0.96267 0.85493 0.90428 1.22269 0.88868 0.91876 0.99379 1.44552 1.21077 1.33700 1.31778 1.19343 0.92114 1.13488 1.13761 0.91666 1.25458 0.96049 1.01805 1.00245 1.70192 0.98613 1.36675 1.50692 0.85507 0.76702 0.81743 0.77918 1.21738 1.22216 1.20024 1.24729 0.96669 0.82963 1.06529 1.70207 1.00855 1.32149 1.20711 0.90938 0.88842 0.92501 0.76928 0.86649 0.89323 0.90083 0.93032 0.89300 0.88037 0.92184 0.87107 0.89765 0.94638 0.89176 0.93586 0.94404 0.94554 0.90042 0.92133 0.94305 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.42 71.24 0.74 -0.23 16 2 C -0.03 -0.63 7.09 41.39 0.29 -0.33 16 3 C -0.03 -0.59 10.56 83.09 0.88 0.29 16 4 N -0.44 -9.62 1.47 -488.69 -0.72 -10.33 16 5 C 0.15 3.11 0.79 2.86 0.00 3.11 16 6 C -0.18 -2.73 6.70 71.98 0.48 -2.25 16 7 C -0.14 -2.35 7.98 71.98 0.57 -1.78 16 8 C 0.51 15.00 3.45 87.66 0.30 15.30 16 9 O -0.56 -19.61 15.38 -3.02 -0.05 -19.66 16 10 N -0.58 -18.51 0.73 -816.31 -0.59 -19.11 16 11 C 0.10 3.00 3.41 86.66 0.30 3.29 16 12 C 0.14 5.28 3.63 45.27 0.16 5.44 16 13 H 0.08 2.82 8.01 -2.39 -0.02 2.80 16 14 C -0.12 -3.91 5.10 30.72 0.16 -3.75 16 15 C -0.13 -4.54 4.73 30.60 0.14 -4.39 16 16 C -0.11 -4.52 5.58 30.72 0.17 -4.35 16 17 C 0.18 7.99 2.70 45.11 0.12 8.11 16 18 H 0.08 4.09 5.87 -2.39 -0.01 4.07 16 19 C 0.10 3.82 5.89 86.49 0.51 4.33 16 20 N -0.59 -26.99 2.54 -644.80 -1.64 -28.62 16 21 C -0.26 -13.36 9.69 84.03 0.81 -12.55 16 22 H 0.07 3.36 7.93 -2.91 -0.02 3.34 16 23 C -0.04 -2.08 4.88 84.86 0.41 -1.67 16 24 N -0.92 -51.52 11.31 21.65 0.24 -51.27 16 25 Si 0.95 43.99 29.61 68.60 2.03 46.02 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 C 0.17 4.87 8.58 180.26 1.55 6.42 16 30 N -0.52 -15.45 11.25 -188.32 -2.12 -17.57 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.21 1.79 7.98 -2.91 -0.02 1.77 16 35 H 0.11 0.96 7.91 -2.39 -0.02 0.95 16 36 H 0.09 1.43 7.50 -2.39 -0.02 1.41 16 37 H 0.08 1.48 2.81 -2.38 -0.01 1.47 16 38 H 0.05 1.10 8.09 -2.38 -0.02 1.09 16 39 H 0.09 1.49 8.13 -2.39 -0.02 1.47 16 40 H 0.10 1.12 8.02 -2.39 -0.02 1.11 16 41 H 0.06 2.06 7.06 -2.39 -0.02 2.04 16 42 H 0.11 2.82 3.12 -2.39 -0.01 2.81 16 43 H 0.08 2.10 6.01 -2.39 -0.01 2.09 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 2.85 1.60 -3.36 -0.01 2.85 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.08 3.13 6.98 -2.39 -0.02 3.11 16 50 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.25 13.72 8.31 -92.71 -0.77 12.94 16 52 H 0.18 5.63 6.42 -2.91 -0.02 5.61 16 Total: -1.00 -66.48 371.67 5.71 -60.77 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.93 Total: 24.79 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.61 Total: 14.99 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.83 Total: -126.90 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -66.48 5.71 -60.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039677654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.362 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds