Wall clock time and date at job start Wed Apr 1 2020 03:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30837 * 125.89889 * 2 1 4 4 N 1.40080 * 108.20521 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.04123 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92752 * 359.97438 * 4 3 2 7 7 C 1.50695 * 126.12669 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.74515 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.04080 * 180.02562 * 8 6 4 10 10 C 1.52992 * 109.47277 * 89.99819 * 9 8 6 11 11 C 1.50693 * 109.47218 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00218 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00318 * 179.97438 * 11 10 9 14 14 C 1.46953 * 120.43969 * 359.72831 * 13 11 10 15 15 C 1.54065 * 108.30139 * 125.71680 * 14 13 11 16 16 H 1.08995 * 110.52441 * 172.86826 * 15 14 13 17 17 C 1.53371 * 108.83638 * 294.51227 * 15 14 13 18 18 C 1.53014 * 109.25278 * 60.25639 * 17 15 14 19 19 C 1.53006 * 109.79870 * 60.57463 * 18 17 15 20 20 C 1.53366 * 109.28231 * 299.44075 * 19 18 17 21 21 H 1.08995 * 110.59641 * 178.09764 * 20 19 18 22 22 C 1.46944 * 120.44641 * 179.97438 * 13 11 10 23 23 N 1.47569 * 107.98135 * 56.33740 * 20 19 18 24 24 C 1.36941 * 121.61227 * 122.27993 * 23 20 19 25 25 H 1.07997 * 119.99533 * 332.60277 * 24 23 20 26 26 C 1.38812 * 120.00161 * 152.59594 * 24 23 20 27 27 N 1.31623 * 120.00001 * 341.94274 * 26 24 23 28 28 Si 1.86796 * 120.00141 * 161.94356 * 26 24 23 29 29 H 1.48500 * 109.47046 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47210 * 119.99825 * 28 26 24 31 31 H 1.48498 * 109.47404 * 240.00291 * 28 26 24 32 32 H 1.08993 * 109.47469 * 90.02364 * 1 2 3 33 33 H 1.09000 * 109.46772 * 210.02626 * 1 2 3 34 34 H 1.08998 * 109.47142 * 330.02360 * 1 2 3 35 35 H 1.09005 * 109.47383 * 89.97816 * 7 6 4 36 36 H 1.09009 * 109.47152 * 209.97522 * 7 6 4 37 37 H 1.09007 * 109.47587 * 329.97549 * 7 6 4 38 38 H 1.09007 * 109.46966 * 210.00154 * 9 8 6 39 39 H 1.09000 * 109.46496 * 329.99738 * 9 8 6 40 40 H 1.09007 * 109.47396 * 300.00071 * 10 9 8 41 41 H 1.09001 * 109.47145 * 60.00017 * 10 9 8 42 42 H 1.08995 * 109.61941 * 245.48479 * 14 13 11 43 43 H 1.08999 * 109.61870 * 6.04822 * 14 13 11 44 44 H 1.08993 * 109.50776 * 300.32439 * 17 15 14 45 45 H 1.09001 * 109.50320 * 180.18487 * 17 15 14 46 46 H 1.09003 * 109.41384 * 300.47805 * 18 17 15 47 47 H 1.08996 * 109.36234 * 180.64276 * 18 17 15 48 48 H 1.08999 * 109.50155 * 179.50140 * 19 18 17 49 49 H 1.08998 * 109.53853 * 59.40545 * 19 18 17 50 50 H 1.09003 * 109.62784 * 353.96988 * 22 13 11 51 51 H 1.08998 * 109.62602 * 114.53922 * 22 13 11 52 52 H 0.96992 * 119.99975 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7154 -0.0004 7 6 4.8350 -1.5989 -0.0014 8 6 2.3272 -1.1331 -0.0002 9 6 1.8599 -2.5658 0.0006 10 6 1.7017 -3.0499 1.4432 11 6 1.2351 -4.4827 1.4440 12 8 1.0480 -5.0602 0.3940 13 7 1.0267 -5.1230 2.6116 14 6 1.2571 -4.4350 3.8895 15 6 -0.0265 -4.5416 4.7347 16 1 0.1438 -4.1536 5.7389 17 6 -1.1456 -3.7590 4.0364 18 6 -1.3904 -4.3575 2.6497 19 6 -1.8170 -5.8207 2.7847 20 6 -0.7011 -6.6116 3.4785 21 1 -0.9968 -7.6516 3.6160 22 6 0.5712 -6.5200 2.6237 23 7 -0.4209 -5.9631 4.7741 24 6 -0.5220 -6.6473 5.9560 25 1 -1.1982 -7.4854 6.0386 26 6 0.2446 -6.2638 7.0478 27 7 1.3037 -5.5020 6.8733 28 14 -0.2267 -6.8288 8.7648 29 1 -1.4481 -7.6703 8.6911 30 1 0.8854 -7.6216 9.3477 31 1 -0.4919 -5.6444 9.6203 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3633 -0.8898 0.5143 34 1 -0.3633 0.8902 0.5135 35 1 5.1306 -1.8114 1.0261 36 1 4.6070 -2.5332 -0.5145 37 1 5.6506 -1.0912 -0.5165 38 1 0.9012 -2.6356 -0.5134 39 1 2.5935 -3.1874 -0.5129 40 1 2.6605 -2.9801 1.9572 41 1 0.9682 -2.4282 1.9567 42 1 2.0859 -4.9085 4.4158 43 1 1.4890 -3.3863 3.7039 44 1 -0.8508 -2.7145 3.9352 45 1 -2.0590 -3.8245 4.6275 46 1 -0.4734 -4.3001 2.0632 47 1 -2.1776 -3.7954 2.1473 48 1 -1.9986 -6.2396 1.7949 49 1 -2.7291 -5.8812 3.3783 50 1 0.3522 -6.8426 1.6058 51 1 1.3468 -7.1543 3.0528 52 1 1.8396 -5.2343 7.6361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039998538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:04 Heat of formation + Delta-G solvation = 54.990213 kcal Electronic energy + Delta-G solvation = -32694.651659 eV Core-core repulsion = 28695.908096 eV Total energy + Delta-G solvation = -3998.743563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35287 -41.92539 -39.23216 -35.46375 -35.21014 -34.54461 -34.23376 -33.45442 -31.99487 -31.29792 -29.07214 -28.46589 -27.82501 -27.02880 -25.53172 -24.57083 -23.10033 -22.66537 -21.06988 -20.62229 -20.15624 -19.86648 -18.56226 -18.21858 -17.48037 -16.90287 -16.54983 -16.44765 -15.97691 -15.74952 -15.44661 -15.17255 -14.74628 -14.66817 -14.43557 -14.29673 -14.12000 -14.09535 -13.84066 -13.65064 -13.55920 -13.36897 -13.30216 -13.17309 -12.98725 -12.87216 -12.76539 -12.67247 -12.58854 -12.33496 -12.05891 -11.93994 -11.83617 -11.65819 -11.62738 -11.34482 -11.09735 -11.08066 -10.68169 -10.47293 -10.14934 -9.33102 -9.26691 -8.39821 -7.82029 -5.22889 0.93525 1.48189 1.53066 1.60427 1.72426 1.74330 2.01631 2.24056 2.55815 3.32723 3.55161 3.63324 3.79294 3.86201 4.14493 4.17454 4.23053 4.23488 4.29107 4.29652 4.35859 4.47365 4.51375 4.54918 4.65580 4.72602 4.74171 4.75986 4.81445 4.82853 4.86011 4.89657 4.95743 5.05052 5.06355 5.10987 5.16525 5.19697 5.20825 5.26133 5.32703 5.37335 5.42155 5.53690 5.56522 5.67183 5.71782 5.79506 5.91555 6.43455 6.48823 6.65531 6.78608 7.20677 7.30267 7.87214 8.46109 9.23206 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.003123 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.828271 B = 8964.058846 C = 9365.469026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.076 3.924 3 N -0.331 5.331 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.099 3.901 7 C -0.096 4.096 8 C -0.252 4.252 9 C -0.009 4.009 10 C -0.126 4.126 11 C 0.514 3.486 12 O -0.583 6.583 13 N -0.592 5.592 14 C 0.116 3.884 15 C 0.174 3.826 16 H 0.081 0.919 17 C -0.124 4.124 18 C -0.135 4.135 19 C -0.115 4.115 20 C 0.148 3.852 21 H 0.071 0.929 22 C 0.108 3.892 23 N -0.595 5.595 24 C -0.256 4.256 25 H 0.058 0.942 26 C -0.037 4.037 27 N -0.917 5.917 28 Si 0.956 3.044 29 H -0.276 1.276 30 H -0.296 1.296 31 H -0.292 1.292 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.089 0.911 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.046 0.954 50 H 0.084 0.916 51 H 0.044 0.956 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 10.215 -13.239 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.155 5.155 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.031 4.031 7 C -0.154 4.154 8 C -0.263 4.263 9 C -0.048 4.048 10 C -0.166 4.166 11 C 0.306 3.694 12 O -0.464 6.464 13 N -0.324 5.324 14 C -0.008 4.008 15 C 0.067 3.933 16 H 0.099 0.901 17 C -0.163 4.163 18 C -0.173 4.173 19 C -0.154 4.154 20 C 0.041 3.959 21 H 0.089 0.911 22 C -0.017 4.017 23 N -0.316 5.316 24 C -0.386 4.386 25 H 0.076 0.924 26 C -0.233 4.233 27 N -0.563 5.563 28 Si 0.786 3.214 29 H -0.201 1.201 30 H -0.223 1.223 31 H -0.219 1.219 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.062 0.938 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.389 11.213 -13.622 18.180 hybrid contribution 0.262 -1.042 1.490 1.837 sum 4.651 10.170 -12.132 16.500 Atomic orbital electron populations 1.20290 0.85666 1.03872 1.03767 1.22614 0.97928 0.90250 0.98243 1.77209 0.87611 1.23175 1.27530 1.46165 1.07097 1.05160 1.59887 0.70585 1.21328 0.97635 0.85050 0.99071 1.20623 0.92070 0.98151 1.04531 1.19795 0.91827 0.95998 1.18691 1.19413 1.01868 0.89505 0.93998 1.21721 1.03721 0.90837 1.00278 1.20926 0.76202 0.89841 0.82438 1.90635 1.54559 1.69517 1.31734 1.48276 1.64542 1.13096 1.06521 1.22245 0.99448 0.96391 0.82725 1.21107 0.90578 0.83875 0.97728 0.90075 1.22004 0.99059 0.98759 0.96458 1.22077 1.02555 0.95268 0.97433 1.21821 0.97858 0.96648 0.99080 1.21321 0.92696 0.96045 0.85814 0.91089 1.21980 0.97032 0.82268 1.00418 1.44543 1.79900 1.06574 1.00617 1.19361 1.16824 1.13179 0.89228 0.92418 1.25478 0.95439 1.01174 1.01210 1.70063 1.15627 1.40989 1.29611 0.85392 0.77308 0.77224 0.81517 1.20121 1.22311 1.21865 0.89541 0.89769 0.90548 0.89085 0.89236 0.88963 0.91252 0.91003 0.88185 0.88277 0.92759 0.89005 0.91311 0.94191 0.89373 0.93088 0.91995 0.93508 0.89740 0.93798 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.12 71.24 0.72 -0.72 16 2 C 0.08 1.76 7.22 43.10 0.31 2.07 16 3 N -0.33 -8.10 12.70 -47.38 -0.60 -8.70 16 4 N -0.47 -8.82 7.36 -48.01 -0.35 -9.17 16 5 H 0.45 5.39 8.96 -213.33 -1.91 3.47 16 6 C 0.10 1.81 7.21 41.40 0.30 2.11 16 7 C -0.10 -1.13 10.22 71.23 0.73 -0.40 16 8 C -0.25 -5.52 5.35 -20.14 -0.11 -5.63 16 9 C -0.01 -0.20 4.44 29.85 0.13 -0.07 16 10 C -0.13 -3.06 3.99 29.84 0.12 -2.94 16 11 C 0.51 16.33 5.02 87.65 0.44 16.77 16 12 O -0.58 -21.29 15.38 -3.03 -0.05 -21.34 16 13 N -0.59 -20.75 1.64 -816.40 -1.34 -22.09 16 14 C 0.12 4.29 5.78 86.65 0.50 4.79 16 15 C 0.17 7.31 2.63 45.27 0.12 7.42 16 16 H 0.08 3.97 5.96 -2.39 -0.01 3.95 16 17 C -0.12 -4.39 5.59 30.72 0.17 -4.22 16 18 C -0.14 -4.48 5.55 30.60 0.17 -4.31 16 19 C -0.12 -4.04 5.58 30.72 0.17 -3.87 16 20 C 0.15 5.90 3.61 45.10 0.16 6.06 16 21 H 0.07 2.83 8.03 -2.39 -0.02 2.82 16 22 C 0.11 4.07 5.88 86.48 0.51 4.58 16 23 N -0.59 -27.39 2.53 -644.86 -1.63 -29.02 16 24 C -0.26 -13.24 9.73 84.03 0.82 -12.42 16 25 H 0.06 3.02 7.89 -2.91 -0.02 2.99 16 26 C -0.04 -1.89 4.99 84.86 0.42 -1.47 16 27 N -0.92 -48.65 10.71 21.65 0.23 -48.42 16 28 Si 0.96 42.97 29.59 68.60 2.03 45.00 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 31 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.49 7.92 -2.39 -0.02 1.47 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.09 1.10 7.15 -2.38 -0.02 1.08 16 37 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.07 1.67 7.88 -2.38 -0.02 1.65 16 39 H 0.07 1.64 7.10 -2.39 -0.02 1.62 16 40 H 0.10 2.23 7.91 -2.38 -0.02 2.21 16 41 H 0.10 2.31 7.69 -2.39 -0.02 2.29 16 42 H 0.05 2.38 7.74 -2.39 -0.02 2.36 16 43 H 0.09 2.82 5.90 -2.39 -0.01 2.81 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 2.91 2.49 -3.36 -0.01 2.90 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 3.07 6.99 -2.39 -0.02 3.05 16 51 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 Total: -1.00 -63.90 393.48 3.00 -60.90 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.98 Total: 25.07 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.69 Total: 7.77 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -3.69 Total: -117.40 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.90 3.00 -60.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039998538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.893 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds