Wall clock time and date at job start Wed Apr 1 2020 03:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90012 * 2 1 4 4 N 1.40089 * 108.20603 * 180.25760 * 3 2 1 5 5 H 0.97003 * 126.03575 * 179.73789 * 4 3 2 6 6 C 1.34944 * 107.92341 * 359.72158 * 4 3 2 7 7 C 1.50709 * 126.12707 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74948 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03996 * 180.02562 * 8 6 4 10 10 C 1.50695 * 109.46814 * 90.00852 * 9 8 6 11 11 O 1.21280 * 120.00193 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00107 * 179.97438 * 10 9 8 13 13 C 1.47494 * 125.66062 * 359.97201 * 12 10 9 14 14 C 1.55025 * 104.90275 * 204.03621 * 13 12 10 15 15 C 1.54786 * 101.63511 * 323.75066 * 14 13 12 16 16 C 1.47179 * 125.66782 * 179.97438 * 12 10 9 17 17 C 1.52238 * 110.45627 * 153.14413 * 15 14 13 18 18 C 1.53154 * 109.70964 * 63.24006 * 17 15 14 19 19 C 1.53192 * 109.27868 * 60.15769 * 18 17 15 20 20 N 1.46943 * 108.87871 * 304.70581 * 19 18 17 21 21 C 1.36936 * 120.70483 * 234.21963 * 20 19 18 22 22 H 1.07993 * 120.00392 * 27.25689 * 21 20 19 23 23 C 1.38818 * 119.99680 * 207.25727 * 21 20 19 24 24 N 1.31620 * 119.99881 * 17.20535 * 23 21 20 25 25 Si 1.86797 * 119.99797 * 197.20251 * 23 21 20 26 26 H 1.48507 * 109.46916 * 60.00100 * 25 23 21 27 27 H 1.48498 * 109.47254 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47194 * 300.00438 * 25 23 21 29 29 C 1.47072 * 118.59112 * 54.24047 * 20 19 18 30 30 H 1.08992 * 109.46922 * 270.21247 * 1 2 3 31 31 H 1.08998 * 109.46720 * 30.21296 * 1 2 3 32 32 H 1.08996 * 109.46816 * 150.21323 * 1 2 3 33 33 H 1.09004 * 109.46671 * 269.97394 * 7 6 4 34 34 H 1.08996 * 109.46608 * 29.96709 * 7 6 4 35 35 H 1.08994 * 109.47225 * 149.96709 * 7 6 4 36 36 H 1.08994 * 109.47219 * 330.00201 * 9 8 6 37 37 H 1.08998 * 109.46734 * 210.00744 * 9 8 6 38 38 H 1.08994 * 110.35120 * 322.89135 * 13 12 10 39 39 H 1.08994 * 110.34949 * 85.17784 * 13 12 10 40 40 H 1.08997 * 111.01527 * 81.71080 * 14 13 12 41 41 H 1.09001 * 111.01147 * 205.59157 * 14 13 12 42 42 H 1.08997 * 109.90935 * 297.81679 * 16 12 10 43 43 H 1.09000 * 109.90941 * 58.89156 * 16 12 10 44 44 H 1.09004 * 109.43435 * 183.31711 * 17 15 14 45 45 H 1.09007 * 109.42735 * 303.21810 * 17 15 14 46 46 H 1.08995 * 109.50263 * 180.09643 * 18 17 15 47 47 H 1.08998 * 109.49977 * 300.17658 * 18 17 15 48 48 H 1.08997 * 109.57003 * 64.53196 * 19 18 17 49 49 H 1.09001 * 109.56464 * 184.76993 * 19 18 17 50 50 H 0.97005 * 119.99306 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.57002 * 187.74397 * 29 20 19 52 52 H 1.08997 * 109.57159 * 67.38017 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0109 6 6 3.6142 -0.7154 -0.0033 7 6 4.8351 -1.5990 -0.0073 8 6 2.3272 -1.1330 0.0047 9 6 1.8600 -2.5658 0.0107 10 6 1.7118 -3.0398 1.4334 11 8 1.9614 -2.2884 2.3521 12 7 1.3018 -4.2988 1.6851 13 6 0.9653 -5.3129 0.6684 14 6 0.0060 -6.2956 1.3877 15 6 0.6015 -6.3237 2.8162 16 6 1.1155 -4.8900 3.0200 17 6 -0.4779 -6.6591 3.8360 18 6 -1.0197 -8.0668 3.5707 19 6 0.1233 -9.0797 3.6908 20 7 1.2073 -8.6833 2.7814 21 6 1.7006 -9.5638 1.8558 22 1 1.0707 -10.3519 1.4708 23 6 3.0105 -9.4431 1.4124 24 7 3.8746 -8.7265 2.0996 25 14 3.5469 -10.2980 -0.1595 26 1 2.7352 -9.7964 -1.2975 27 1 4.9822 -10.0137 -0.4126 28 1 3.3492 -11.7630 -0.0185 29 6 1.7516 -7.3211 2.8866 30 1 -0.3633 0.0038 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5105 33 1 5.1243 -1.8144 -1.0359 34 1 5.6537 -1.0898 0.5012 35 1 4.6102 -2.5317 0.5100 36 1 2.5906 -3.1884 -0.5056 37 1 0.8985 -2.6365 -0.4979 38 1 0.4645 -4.8472 -0.1803 39 1 1.8649 -5.8333 0.3399 40 1 -1.0130 -5.9091 1.3992 41 1 0.0425 -7.2837 0.9288 42 1 2.0657 -4.9085 3.5536 43 1 0.3846 -4.3104 3.5839 44 1 -0.0544 -6.6167 4.8395 45 1 -1.2905 -5.9372 3.7545 46 1 -1.7932 -8.3027 4.3015 47 1 -1.4418 -8.1110 2.5668 48 1 0.4932 -9.0929 4.7160 49 1 -0.2381 -10.0718 3.4203 50 1 4.7898 -8.6420 1.7894 51 1 2.4431 -7.1396 2.0638 52 1 2.2743 -7.2091 3.8365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040525061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:22 Heat of formation + Delta-G solvation = 48.905369 kcal Electronic energy + Delta-G solvation = -31973.811317 eV Core-core repulsion = 27974.803895 eV Total energy + Delta-G solvation = -3999.007422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45182 -39.97175 -38.21757 -35.65343 -33.51771 -33.21746 -32.93424 -31.26917 -29.99951 -29.35133 -29.00412 -27.70742 -26.51743 -25.40894 -24.85505 -22.72693 -22.18625 -20.80745 -20.25119 -19.70968 -18.75408 -18.01910 -17.34799 -16.78648 -16.50702 -15.75587 -15.32392 -15.01582 -14.67485 -14.17360 -14.05660 -13.88345 -13.73029 -13.52627 -13.40684 -13.34334 -13.12908 -12.91100 -12.58689 -12.47105 -12.40807 -12.30409 -12.10491 -12.07213 -11.93688 -11.76156 -11.54355 -11.23975 -10.99440 -10.92523 -10.66162 -10.54883 -10.42697 -10.17033 -10.02676 -9.81025 -9.68707 -9.47955 -9.39134 -9.25983 -8.50658 -8.38743 -8.25443 -6.70962 -5.82710 -3.24251 1.81222 2.60100 2.80109 2.96059 3.33608 3.40544 3.40917 3.44137 4.44936 4.55910 4.59526 4.79991 4.90605 5.02772 5.09337 5.16489 5.24568 5.26829 5.32994 5.36435 5.41513 5.50813 5.55290 5.62239 5.65856 5.66480 5.73433 5.78364 5.82864 5.88964 5.92822 6.03064 6.05819 6.11787 6.22983 6.26643 6.35513 6.44755 6.47319 6.55828 6.61349 6.65798 6.76922 6.83666 6.92288 6.99785 7.23461 7.30110 7.60890 7.65608 7.75711 7.89200 8.40045 8.51382 9.17010 9.80840 10.38431 11.25509 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003200 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.069590 B = 8748.611259 C =10099.169445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.094 3.906 3 N -0.301 5.301 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.104 3.896 7 C -0.096 4.096 8 C -0.215 4.215 9 C -0.057 4.057 10 C 0.525 3.475 11 O -0.542 6.542 12 N -0.613 5.613 13 C 0.099 3.901 14 C -0.112 4.112 15 C -0.092 4.092 16 C 0.122 3.878 17 C -0.093 4.093 18 C -0.132 4.132 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.251 4.251 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.898 3.102 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.189 3.811 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.016 0.984 49 H 0.052 0.948 50 H 0.254 0.746 51 H 0.091 0.909 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 12.611 -5.458 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.124 5.124 4 N -0.186 5.186 5 H 0.279 0.721 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.226 4.226 9 C -0.098 4.098 10 C 0.313 3.687 11 O -0.419 6.419 12 N -0.347 5.347 13 C -0.024 4.024 14 C -0.150 4.150 15 C -0.094 4.094 16 C -0.001 4.001 17 C -0.131 4.131 18 C -0.172 4.172 19 C 0.017 3.983 20 N -0.311 5.311 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.727 3.273 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.209 1.209 29 C 0.063 3.937 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.109 0.891 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.579 14.359 -5.017 15.885 hybrid contribution 0.897 -1.029 -0.691 1.530 sum -3.682 13.330 -5.708 14.961 Atomic orbital electron populations 1.20184 0.86940 1.02976 1.03195 1.22116 0.96791 0.90152 0.98199 1.77226 0.86439 1.22252 1.26529 1.46036 1.07246 1.04740 1.60533 0.72052 1.20818 0.96878 0.84888 0.99876 1.20500 0.92855 0.98790 1.03286 1.19037 0.91347 0.94739 1.17491 1.19875 1.03265 0.92284 0.94344 1.20289 0.76871 0.80060 0.91439 1.90677 1.50424 1.54033 1.46787 1.48614 1.66234 1.11319 1.08568 1.22460 0.99532 0.89352 0.91042 1.22730 0.96681 1.00032 0.95560 1.21879 0.98658 0.94050 0.94857 1.21900 1.00745 0.93290 0.84143 1.21248 0.96716 0.96837 0.98275 1.22019 0.98522 0.95875 1.00754 1.20917 0.88774 0.95450 0.93195 1.44041 1.39707 1.09107 1.38283 1.19117 0.93653 1.10303 1.15018 0.91708 1.25000 0.95366 0.99806 0.99263 1.70030 1.03280 1.43832 1.37375 0.86447 0.77371 0.79524 0.83915 1.20968 1.21711 1.20949 1.20659 0.90698 0.81460 1.00908 0.90348 0.90974 0.90549 0.90000 0.90961 0.89361 0.88519 0.88485 0.91410 0.90649 0.92195 0.88328 0.91636 0.92343 0.92573 0.93396 0.93218 0.92187 0.96594 0.92944 0.93611 0.89078 0.96455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.26 36.01 0.37 -0.41 16 2 C 0.09 1.28 7.22 -82.40 -0.59 0.69 16 3 N -0.30 -4.27 12.70 33.67 0.43 -3.84 16 4 N -0.48 -5.64 7.36 33.48 0.25 -5.40 16 5 H 0.44 3.64 8.96 -182.60 -1.64 2.01 16 6 C 0.10 1.27 7.21 -82.26 -0.59 0.68 16 7 C -0.10 -0.91 10.04 36.01 0.36 -0.55 16 8 C -0.21 -2.88 4.59 -105.05 -0.48 -3.36 16 9 C -0.06 -0.70 4.62 -29.04 -0.13 -0.83 16 10 C 0.53 8.37 7.84 -10.99 -0.09 8.28 16 11 O -0.54 -10.64 16.36 5.56 0.09 -10.55 16 12 N -0.61 -9.68 3.33 -170.68 -0.57 -10.24 16 13 C 0.10 1.42 6.37 -2.43 -0.02 1.41 16 14 C -0.11 -1.74 4.94 -24.72 -0.12 -1.86 16 15 C -0.09 -1.58 0.56 -153.92 -0.09 -1.67 16 16 C 0.12 2.08 6.04 -3.32 -0.02 2.05 16 17 C -0.09 -1.46 4.53 -27.04 -0.12 -1.58 16 18 C -0.13 -2.12 5.91 -26.55 -0.16 -2.27 16 19 C 0.14 2.81 6.49 -3.70 -0.02 2.78 16 20 N -0.59 -13.56 2.56 -172.67 -0.44 -14.00 16 21 C -0.25 -6.39 9.60 -15.06 -0.14 -6.53 16 22 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 23 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 24 N -0.90 -24.74 11.17 55.49 0.62 -24.12 16 25 Si 0.90 20.42 29.59 -169.99 -5.03 15.39 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.19 4.13 3.81 -4.04 -0.02 4.11 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.96 7.77 -51.93 -0.40 0.56 16 36 H 0.10 1.05 7.77 -51.93 -0.40 0.65 16 37 H 0.10 0.98 6.95 -51.93 -0.36 0.62 16 38 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 39 H 0.08 1.20 7.68 -51.93 -0.40 0.81 16 40 H 0.06 0.83 8.01 -51.93 -0.42 0.42 16 41 H 0.10 1.75 7.63 -51.93 -0.40 1.35 16 42 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 43 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.96 7.35 -51.93 -0.38 0.58 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 50 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 51 H 0.09 2.23 5.29 -51.93 -0.27 1.95 16 52 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -32.25 404.44 -10.52 -42.78 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -10.01 Total: 2.92 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.95 Total: 0.96 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.28 Total: -57.60 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.25 -10.52 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040525061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.683 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds