Wall clock time and date at job start Wed Apr 1 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90012 * 2 1 4 4 N 1.40089 * 108.20603 * 180.25760 * 3 2 1 5 5 H 0.97003 * 126.03575 * 179.73789 * 4 3 2 6 6 C 1.34944 * 107.92341 * 359.72158 * 4 3 2 7 7 C 1.50709 * 126.12707 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74948 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03996 * 180.02562 * 8 6 4 10 10 C 1.50695 * 109.46814 * 90.00852 * 9 8 6 11 11 O 1.21280 * 120.00193 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00107 * 179.97438 * 10 9 8 13 13 C 1.47494 * 125.66062 * 359.97201 * 12 10 9 14 14 C 1.55025 * 104.90275 * 204.03621 * 13 12 10 15 15 C 1.54786 * 101.63511 * 323.75066 * 14 13 12 16 16 C 1.47179 * 125.66782 * 179.97438 * 12 10 9 17 17 C 1.52238 * 110.45627 * 153.14413 * 15 14 13 18 18 C 1.53154 * 109.70964 * 63.24006 * 17 15 14 19 19 C 1.53192 * 109.27868 * 60.15769 * 18 17 15 20 20 N 1.46943 * 108.87871 * 304.70581 * 19 18 17 21 21 C 1.36936 * 120.70483 * 234.21963 * 20 19 18 22 22 H 1.07993 * 120.00392 * 27.25689 * 21 20 19 23 23 C 1.38818 * 119.99680 * 207.25727 * 21 20 19 24 24 N 1.31620 * 119.99881 * 17.20535 * 23 21 20 25 25 Si 1.86797 * 119.99797 * 197.20251 * 23 21 20 26 26 H 1.48507 * 109.46916 * 60.00100 * 25 23 21 27 27 H 1.48498 * 109.47254 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47194 * 300.00438 * 25 23 21 29 29 C 1.47072 * 118.59112 * 54.24047 * 20 19 18 30 30 H 1.08992 * 109.46922 * 270.21247 * 1 2 3 31 31 H 1.08998 * 109.46720 * 30.21296 * 1 2 3 32 32 H 1.08996 * 109.46816 * 150.21323 * 1 2 3 33 33 H 1.09004 * 109.46671 * 269.97394 * 7 6 4 34 34 H 1.08996 * 109.46608 * 29.96709 * 7 6 4 35 35 H 1.08994 * 109.47225 * 149.96709 * 7 6 4 36 36 H 1.08994 * 109.47219 * 330.00201 * 9 8 6 37 37 H 1.08998 * 109.46734 * 210.00744 * 9 8 6 38 38 H 1.08994 * 110.35120 * 322.89135 * 13 12 10 39 39 H 1.08994 * 110.34949 * 85.17784 * 13 12 10 40 40 H 1.08997 * 111.01527 * 81.71080 * 14 13 12 41 41 H 1.09001 * 111.01147 * 205.59157 * 14 13 12 42 42 H 1.08997 * 109.90935 * 297.81679 * 16 12 10 43 43 H 1.09000 * 109.90941 * 58.89156 * 16 12 10 44 44 H 1.09004 * 109.43435 * 183.31711 * 17 15 14 45 45 H 1.09007 * 109.42735 * 303.21810 * 17 15 14 46 46 H 1.08995 * 109.50263 * 180.09643 * 18 17 15 47 47 H 1.08998 * 109.49977 * 300.17658 * 18 17 15 48 48 H 1.08997 * 109.57003 * 64.53196 * 19 18 17 49 49 H 1.09001 * 109.56464 * 184.76993 * 19 18 17 50 50 H 0.97005 * 119.99306 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.57002 * 187.74397 * 29 20 19 52 52 H 1.08997 * 109.57159 * 67.38017 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0109 6 6 3.6142 -0.7154 -0.0033 7 6 4.8351 -1.5990 -0.0073 8 6 2.3272 -1.1330 0.0047 9 6 1.8600 -2.5658 0.0107 10 6 1.7118 -3.0398 1.4334 11 8 1.9614 -2.2884 2.3521 12 7 1.3018 -4.2988 1.6851 13 6 0.9653 -5.3129 0.6684 14 6 0.0060 -6.2956 1.3877 15 6 0.6015 -6.3237 2.8162 16 6 1.1155 -4.8900 3.0200 17 6 -0.4779 -6.6591 3.8360 18 6 -1.0197 -8.0668 3.5707 19 6 0.1233 -9.0797 3.6908 20 7 1.2073 -8.6833 2.7814 21 6 1.7006 -9.5638 1.8558 22 1 1.0707 -10.3519 1.4708 23 6 3.0105 -9.4431 1.4124 24 7 3.8746 -8.7265 2.0996 25 14 3.5469 -10.2980 -0.1595 26 1 2.7352 -9.7964 -1.2975 27 1 4.9822 -10.0137 -0.4126 28 1 3.3492 -11.7630 -0.0185 29 6 1.7516 -7.3211 2.8866 30 1 -0.3633 0.0038 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3633 -0.8919 -0.5105 33 1 5.1243 -1.8144 -1.0359 34 1 5.6537 -1.0898 0.5012 35 1 4.6102 -2.5317 0.5100 36 1 2.5906 -3.1884 -0.5056 37 1 0.8985 -2.6365 -0.4979 38 1 0.4645 -4.8472 -0.1803 39 1 1.8649 -5.8333 0.3399 40 1 -1.0130 -5.9091 1.3992 41 1 0.0425 -7.2837 0.9288 42 1 2.0657 -4.9085 3.5536 43 1 0.3846 -4.3104 3.5839 44 1 -0.0544 -6.6167 4.8395 45 1 -1.2905 -5.9372 3.7545 46 1 -1.7932 -8.3027 4.3015 47 1 -1.4418 -8.1110 2.5668 48 1 0.4932 -9.0929 4.7160 49 1 -0.2381 -10.0718 3.4203 50 1 4.7898 -8.6420 1.7894 51 1 2.4431 -7.1396 2.0638 52 1 2.2743 -7.2091 3.8365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040525061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:21 Heat of formation + Delta-G solvation = 29.675649 kcal Electronic energy + Delta-G solvation = -31974.645180 eV Core-core repulsion = 27974.803895 eV Total energy + Delta-G solvation = -3999.841285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39566 -41.30213 -39.60379 -37.15161 -34.88308 -34.40740 -33.97332 -32.74399 -31.67279 -30.45154 -30.12635 -28.61133 -27.64088 -27.21788 -26.12310 -24.07486 -23.74113 -22.25642 -21.22094 -20.79090 -19.96168 -19.46632 -18.43160 -18.27446 -17.88695 -17.04840 -16.66838 -16.44714 -15.91182 -15.67511 -15.32157 -15.29689 -14.95092 -14.83045 -14.51849 -14.42111 -14.16201 -14.04176 -13.96370 -13.71416 -13.50996 -13.40875 -13.25756 -13.18459 -13.13152 -12.88826 -12.87981 -12.60803 -12.59477 -12.50848 -12.28684 -12.11775 -11.77695 -11.58906 -11.49518 -11.25327 -11.14967 -10.96942 -10.81959 -10.45174 -10.19412 -9.56745 -9.35008 -8.60984 -7.79917 -5.24112 0.87834 1.52599 1.53559 1.59971 1.60394 1.73689 1.96507 2.25541 2.57164 3.32608 3.51199 3.69863 3.72653 3.77548 3.83568 3.98735 4.03572 4.12939 4.24281 4.34082 4.36126 4.40512 4.45278 4.54620 4.56503 4.64444 4.65393 4.66572 4.75181 4.81991 4.84593 4.87442 4.96330 4.99826 5.05364 5.06709 5.07398 5.19028 5.20014 5.23027 5.24900 5.34327 5.45721 5.46562 5.53721 5.67828 5.72318 5.73033 5.82423 6.42196 6.45119 6.66479 6.72791 7.21638 7.27102 7.93413 8.46440 9.25928 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003200 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.069590 B = 8748.611259 C =10099.169445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.102 3.898 7 C -0.093 4.093 8 C -0.240 4.240 9 C -0.047 4.047 10 C 0.524 3.476 11 O -0.585 6.585 12 N -0.613 5.613 13 C 0.102 3.898 14 C -0.103 4.103 15 C -0.085 4.085 16 C 0.126 3.874 17 C -0.091 4.091 18 C -0.119 4.119 19 C 0.135 3.865 20 N -0.604 5.604 21 C -0.254 4.254 22 H 0.068 0.932 23 C -0.045 4.045 24 N -0.935 5.935 25 Si 0.958 3.042 26 H -0.270 1.270 27 H -0.300 1.300 28 H -0.282 1.282 29 C 0.204 3.796 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.004 0.996 49 H 0.053 0.947 50 H 0.247 0.753 51 H 0.061 0.939 52 H -0.025 1.025 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 12.930 -7.344 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.156 5.156 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.252 4.252 9 C -0.087 4.087 10 C 0.314 3.686 11 O -0.465 6.465 12 N -0.346 5.346 13 C -0.020 4.020 14 C -0.141 4.141 15 C -0.087 4.087 16 C 0.003 3.997 17 C -0.129 4.129 18 C -0.158 4.158 19 C 0.010 3.990 20 N -0.326 5.326 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.241 4.241 24 N -0.581 5.581 25 Si 0.787 3.213 26 H -0.195 1.195 27 H -0.227 1.227 28 H -0.208 1.208 29 C 0.078 3.922 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.022 0.978 49 H 0.072 0.928 50 H 0.056 0.944 51 H 0.080 0.920 52 H -0.007 1.007 Dipole moment (debyes) X Y Z Total from point charges -6.781 14.672 -6.913 17.580 hybrid contribution 1.628 -1.170 -0.001 2.005 sum -5.152 13.502 -6.915 16.021 Atomic orbital electron populations 1.20288 0.85221 1.04581 1.03156 1.22631 0.98162 0.90079 0.97637 1.77162 0.87439 1.23173 1.27803 1.46085 1.07216 1.04964 1.60011 0.70623 1.21263 0.97641 0.85247 0.98648 1.20562 0.92268 0.97579 1.04764 1.19308 0.91907 0.95243 1.18693 1.19897 1.05233 0.91825 0.91785 1.20992 0.75536 0.79417 0.92618 1.90657 1.52205 1.55166 1.48462 1.48695 1.66084 1.11615 1.08241 1.22504 0.98811 0.88952 0.91755 1.22660 0.98337 0.99498 0.93633 1.21650 0.97392 0.92461 0.97199 1.21743 0.99413 0.93487 0.85092 1.21266 0.96877 0.97579 0.97182 1.21881 0.97343 0.94423 1.02130 1.21105 0.89107 0.97015 0.91769 1.44285 1.40317 1.09337 1.38702 1.19425 0.93658 1.10265 1.15019 0.91432 1.25671 0.95502 1.00961 1.01917 1.70207 1.03180 1.45838 1.38925 0.85486 0.76406 0.78450 0.80998 1.19510 1.22675 1.20786 1.20330 0.91875 0.82607 0.97378 0.91047 0.89910 0.88474 0.87620 0.89514 0.91015 0.86991 0.85607 0.87128 0.92796 0.89156 0.90297 0.94737 0.91343 0.93386 0.90304 0.90232 0.91479 0.97806 0.92815 0.94430 0.92048 1.00677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.26 71.24 0.73 -0.69 16 2 C 0.08 2.11 7.22 43.10 0.31 2.43 16 3 N -0.33 -9.19 12.70 -47.38 -0.60 -9.79 16 4 N -0.47 -10.80 7.36 -48.00 -0.35 -11.16 16 5 H 0.45 7.14 8.96 -213.32 -1.91 5.23 16 6 C 0.10 2.38 7.21 41.41 0.30 2.68 16 7 C -0.09 -1.66 10.04 71.24 0.72 -0.94 16 8 C -0.24 -6.10 4.59 -20.14 -0.09 -6.20 16 9 C -0.05 -1.05 4.62 29.10 0.13 -0.92 16 10 C 0.52 16.16 7.84 87.66 0.69 16.85 16 11 O -0.58 -23.03 16.36 -3.03 -0.05 -23.08 16 12 N -0.61 -18.67 3.33 -812.30 -2.71 -21.38 16 13 C 0.10 2.71 6.37 86.88 0.55 3.26 16 14 C -0.10 -2.97 4.94 31.90 0.16 -2.81 16 15 C -0.08 -2.87 0.56 -51.80 -0.03 -2.89 16 16 C 0.13 4.29 6.04 86.47 0.52 4.81 16 17 C -0.09 -2.68 4.53 30.39 0.14 -2.54 16 18 C -0.12 -3.49 5.91 30.71 0.18 -3.31 16 19 C 0.14 5.26 6.49 86.36 0.56 5.82 16 20 N -0.60 -28.21 2.56 -700.22 -1.79 -30.00 16 21 C -0.25 -13.00 9.60 84.03 0.81 -12.19 16 22 H 0.07 3.37 7.89 -2.91 -0.02 3.35 16 23 C -0.05 -2.38 4.92 84.86 0.42 -1.97 16 24 N -0.94 -53.40 11.17 21.65 0.24 -53.15 16 25 Si 0.96 42.34 29.59 68.60 2.03 44.37 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 C 0.20 9.26 3.81 86.07 0.33 9.59 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.40 7.25 -2.39 -0.02 1.38 16 33 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.54 7.77 -2.39 -0.02 1.52 16 36 H 0.11 2.17 7.77 -2.39 -0.02 2.15 16 37 H 0.13 2.06 6.95 -2.39 -0.02 2.04 16 38 H 0.11 2.03 7.48 -2.39 -0.02 2.01 16 39 H 0.05 1.69 7.68 -2.39 -0.02 1.67 16 40 H 0.09 2.09 8.01 -2.39 -0.02 2.07 16 41 H 0.08 2.64 7.63 -2.39 -0.02 2.63 16 42 H 0.03 1.37 7.79 -2.39 -0.02 1.35 16 43 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 44 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.91 7.35 -2.39 -0.02 1.90 16 48 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.05 2.03 7.94 -2.39 -0.02 2.02 16 50 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 51 H 0.06 3.15 5.29 -2.39 -0.01 3.14 16 52 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 Total: -1.00 -73.23 404.44 2.20 -71.03 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.99 Total: 22.18 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.42 Total: 10.98 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.22 Total: -125.48 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.23 2.20 -71.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040525061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.710 kcal (2) G-P(sol) polarization free energy of solvation -73.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds