Wall clock time and date at job start Wed Apr 1 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.90033 * 2 1 4 4 N 1.40092 * 108.20572 * 180.25311 * 3 2 1 5 5 H 0.96999 * 126.03545 * 179.69383 * 4 3 2 6 6 C 1.34951 * 107.92246 * 359.71490 * 4 3 2 7 7 C 1.50699 * 126.12148 * 180.02562 * 6 4 3 8 8 C 1.35308 * 107.74659 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.03897 * 180.02562 * 8 6 4 10 10 C 1.50701 * 109.47398 * 89.99875 * 9 8 6 11 11 O 1.21286 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00170 * 179.97438 * 10 9 8 13 13 C 1.47087 * 125.62811 * 359.97438 * 12 10 9 14 14 C 1.54466 * 107.29674 * 179.03012 * 13 12 10 15 15 C 1.54392 * 102.86842 * 338.49323 * 14 13 12 16 16 C 1.47577 * 125.63146 * 179.97438 * 12 10 9 17 17 C 1.52102 * 110.51960 * 276.65724 * 15 14 13 18 18 C 1.53341 * 109.44481 * 295.89691 * 17 15 14 19 19 N 1.46928 * 108.69262 * 306.70641 * 18 17 15 20 20 C 1.36937 * 120.55614 * 234.32395 * 19 18 17 21 21 H 1.08002 * 120.00002 * 152.04289 * 20 19 18 22 22 C 1.38810 * 120.00102 * 332.05500 * 20 19 18 23 23 N 1.31618 * 120.00058 * 342.45465 * 22 20 19 24 24 Si 1.86800 * 120.00149 * 162.46408 * 22 20 19 25 25 H 1.48501 * 109.47446 * 94.32563 * 24 22 20 26 26 H 1.48502 * 109.47223 * 214.32916 * 24 22 20 27 27 H 1.48500 * 109.47174 * 334.32210 * 24 22 20 28 28 C 1.46936 * 118.88957 * 54.35145 * 19 18 17 29 29 C 1.52111 * 110.50148 * 152.62541 * 15 14 13 30 30 H 1.08993 * 109.47442 * 270.21731 * 1 2 3 31 31 H 1.09002 * 109.46646 * 30.22237 * 1 2 3 32 32 H 1.09003 * 109.46725 * 150.21352 * 1 2 3 33 33 H 1.08996 * 109.47055 * 269.97512 * 7 6 4 34 34 H 1.09000 * 109.47506 * 29.97744 * 7 6 4 35 35 H 1.08997 * 109.46557 * 149.97592 * 7 6 4 36 36 H 1.09002 * 109.47236 * 329.99620 * 9 8 6 37 37 H 1.09001 * 109.47282 * 209.99884 * 9 8 6 38 38 H 1.08995 * 109.87859 * 59.60102 * 13 12 10 39 39 H 1.09000 * 109.99747 * 298.51635 * 13 12 10 40 40 H 1.09000 * 110.73359 * 96.84008 * 14 13 12 41 41 H 1.09003 * 110.73065 * 220.15411 * 14 13 12 42 42 H 1.09001 * 110.37184 * 322.12723 * 16 12 10 43 43 H 1.08998 * 110.37436 * 84.46803 * 16 12 10 44 44 H 1.08996 * 109.47503 * 55.88224 * 17 15 14 45 45 H 1.08995 * 109.47499 * 175.90362 * 17 15 14 46 46 H 1.09007 * 109.59782 * 186.94736 * 18 17 15 47 47 H 1.09001 * 109.60744 * 66.47283 * 18 17 15 48 48 H 0.96998 * 120.00021 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.60053 * 185.88194 * 28 19 18 50 50 H 1.08999 * 109.73450 * 65.48047 * 28 19 18 51 51 H 1.08996 * 109.47734 * 184.09181 * 29 15 14 52 52 H 1.08993 * 109.47856 * 304.10568 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 1 4.3909 1.2079 -0.0114 6 6 3.6142 -0.7155 -0.0030 7 6 4.8350 -1.5990 -0.0068 8 6 2.3272 -1.1330 0.0039 9 6 1.8599 -2.5658 0.0097 10 6 1.7106 -3.0398 1.4324 11 8 1.9587 -2.2879 2.3512 12 7 1.3004 -4.2987 1.6837 13 6 0.9657 -5.3095 0.6689 14 6 0.5732 -6.6012 1.4194 15 6 1.2351 -6.4107 2.8012 16 6 1.1127 -4.8906 3.0225 17 6 2.6961 -6.8311 2.7550 18 6 2.7862 -8.3327 2.4579 19 7 1.9555 -9.0558 3.4305 20 6 2.4880 -10.0663 4.1858 21 1 2.0764 -10.2871 5.1596 22 6 3.5569 -10.8066 3.7000 23 7 3.8397 -10.7888 2.4146 24 14 4.5940 -11.8285 4.8703 25 1 4.0816 -13.2221 4.8978 26 1 6.0056 -11.8292 4.4090 27 1 4.5195 -11.2467 6.2345 28 6 0.5436 -8.6768 3.5788 29 6 0.4665 -7.1732 3.8697 30 1 -0.3634 0.0039 1.0276 31 1 -0.3633 0.8880 -0.5173 32 1 -0.3633 -0.8919 -0.5105 33 1 5.1243 -1.8146 -1.0353 34 1 5.6537 -1.0898 0.5018 35 1 4.6100 -2.5317 0.5105 36 1 2.5910 -3.1885 -0.5059 37 1 0.8988 -2.6366 -0.4996 38 1 1.8315 -5.4981 0.0342 39 1 0.1288 -4.9650 0.0615 40 1 -0.5098 -6.6767 1.5173 41 1 0.9783 -7.4786 0.9152 42 1 1.8893 -4.5425 3.7035 43 1 0.1256 -4.6421 3.4123 44 1 3.2098 -6.2742 1.9714 45 1 3.1649 -6.6220 3.7165 46 1 3.8218 -8.6613 2.5458 47 1 2.4223 -8.5285 1.4493 48 1 4.5864 -11.3064 2.0751 49 1 0.1007 -9.2324 4.4054 50 1 0.0042 -8.8993 2.6581 51 1 0.9037 -6.9693 4.8471 52 1 -0.5759 -6.8550 3.8644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040936095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:30 Heat of formation + Delta-G solvation = 49.838352 kcal Electronic energy + Delta-G solvation = -31480.064353 eV Core-core repulsion = 27481.097388 eV Total energy + Delta-G solvation = -3998.966965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.56306 -40.23840 -38.36552 -35.80937 -33.62302 -33.28522 -32.89423 -30.92952 -30.00008 -29.51663 -29.38501 -27.86815 -27.13955 -25.87396 -23.91579 -22.96918 -22.23438 -20.99033 -20.37278 -19.86435 -18.96856 -18.02008 -17.44563 -17.06861 -16.33887 -15.96649 -15.44516 -15.05592 -14.80184 -14.42955 -14.07428 -13.95356 -13.69786 -13.61053 -13.51288 -13.41988 -13.20632 -13.00512 -12.77131 -12.70151 -12.58542 -12.44256 -12.35342 -12.21047 -12.06759 -11.74180 -11.54059 -11.30284 -11.07004 -10.73882 -10.70157 -10.65035 -10.46057 -10.20338 -10.13768 -9.85704 -9.79109 -9.52780 -9.43143 -9.35925 -8.50322 -8.48183 -8.45029 -6.66697 -5.80658 -3.21857 1.71049 2.48529 2.70351 2.77279 3.23458 3.36033 3.43789 3.46462 4.44619 4.48792 4.48867 4.61028 4.77803 4.79748 4.94244 5.02654 5.11597 5.14685 5.21807 5.26674 5.35320 5.37424 5.38736 5.43075 5.51200 5.58828 5.61458 5.68341 5.73617 5.81004 5.82467 5.94907 5.98361 6.00829 6.09968 6.14638 6.25720 6.29800 6.39397 6.50944 6.53603 6.62870 6.71085 6.74399 6.85689 6.97103 7.13638 7.35304 7.55786 7.64372 7.67537 7.78923 8.32230 8.44314 9.20623 9.84361 10.40485 11.27729 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002420 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.846948 B =11567.220114 C =12354.191175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.094 3.906 3 N -0.300 5.300 4 N -0.477 5.477 5 H 0.436 0.564 6 C 0.104 3.896 7 C -0.096 4.096 8 C -0.217 4.217 9 C -0.056 4.056 10 C 0.526 3.474 11 O -0.538 6.538 12 N -0.616 5.616 13 C 0.101 3.899 14 C -0.124 4.124 15 C -0.056 4.056 16 C 0.115 3.885 17 C -0.124 4.124 18 C 0.173 3.827 19 N -0.591 5.591 20 C -0.250 4.250 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.148 3.852 29 C -0.118 4.118 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.019 0.981 48 H 0.253 0.747 49 H 0.053 0.947 50 H 0.019 0.981 51 H 0.060 0.940 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 17.576 -8.873 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.123 5.123 4 N -0.185 5.185 5 H 0.280 0.720 6 C -0.024 4.024 7 C -0.154 4.154 8 C -0.228 4.228 9 C -0.097 4.097 10 C 0.314 3.686 11 O -0.415 6.415 12 N -0.351 5.351 13 C -0.021 4.021 14 C -0.162 4.162 15 C -0.057 4.057 16 C -0.008 4.008 17 C -0.163 4.163 18 C 0.047 3.953 19 N -0.314 5.314 20 C -0.380 4.380 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.021 3.979 29 C -0.158 4.158 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.037 0.963 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.037 0.963 51 H 0.079 0.921 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.008 19.234 -8.480 21.399 hybrid contribution 1.059 -1.129 0.556 1.645 sum -2.949 18.105 -7.924 19.982 Atomic orbital electron populations 1.20189 0.86910 1.03019 1.03206 1.22125 0.96813 0.90146 0.98190 1.77245 0.86427 1.22237 1.26384 1.46054 1.07285 1.04744 1.60394 0.71986 1.20815 0.96847 0.84935 0.99847 1.20495 0.92903 0.98711 1.03306 1.19015 0.91355 0.94687 1.17773 1.19872 1.03310 0.92371 0.94139 1.20341 0.76673 0.80033 0.91544 1.90697 1.50204 1.53772 1.46804 1.48611 1.66558 1.11405 1.08489 1.22116 0.99917 0.88778 0.91339 1.22717 1.00675 0.96692 0.96077 1.20994 0.97532 0.92058 0.95074 1.22321 1.00940 0.93057 0.84439 1.21994 0.92949 1.00636 1.00732 1.20815 0.97999 0.85618 0.90831 1.44043 1.03968 1.37789 1.45588 1.19180 1.13641 1.08494 0.96697 0.91797 1.25006 1.01376 0.97935 0.95324 1.70024 1.30189 1.43500 1.11044 0.86330 0.79944 0.80140 0.80663 1.21493 1.21598 1.20468 1.20899 0.87381 0.91391 0.98218 1.21845 0.97749 0.98372 0.97804 0.90342 0.90907 0.90566 0.89946 0.90906 0.89489 0.88530 0.88425 0.91430 0.91795 0.91006 0.88889 0.90870 0.92058 0.93400 0.92644 0.89556 0.96261 0.93710 0.92887 0.96303 0.92122 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.26 36.01 0.37 -0.33 16 2 C 0.09 1.17 7.22 -82.40 -0.59 0.57 16 3 N -0.30 -3.93 12.70 33.67 0.43 -3.50 16 4 N -0.48 -5.10 7.36 33.47 0.25 -4.86 16 5 H 0.44 3.21 8.96 -182.60 -1.64 1.57 16 6 C 0.10 1.13 7.21 -82.27 -0.59 0.54 16 7 C -0.10 -0.76 10.04 36.01 0.36 -0.40 16 8 C -0.22 -2.58 4.59 -105.05 -0.48 -3.06 16 9 C -0.06 -0.58 4.80 -29.03 -0.14 -0.72 16 10 C 0.53 7.27 7.84 -10.99 -0.09 7.18 16 11 O -0.54 -9.64 16.30 5.55 0.09 -9.55 16 12 N -0.62 -8.10 3.32 -170.76 -0.57 -8.67 16 13 C 0.10 1.12 6.11 -2.95 -0.02 1.10 16 14 C -0.12 -1.62 4.92 -25.23 -0.12 -1.74 16 15 C -0.06 -0.85 0.55 -154.11 -0.08 -0.93 16 16 C 0.11 1.66 5.81 -2.88 -0.02 1.64 16 17 C -0.12 -2.23 4.85 -27.01 -0.13 -2.36 16 18 C 0.17 3.84 5.02 -3.63 -0.02 3.83 16 19 N -0.59 -14.02 2.98 -172.12 -0.51 -14.53 16 20 C -0.25 -6.67 9.57 -15.06 -0.14 -6.81 16 21 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 22 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 23 N -0.90 -25.39 11.20 55.49 0.62 -24.77 16 24 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.15 2.87 6.24 -3.63 -0.02 2.85 16 29 C -0.12 -1.89 4.84 -27.01 -0.13 -2.02 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.57 7.25 -51.93 -0.38 0.19 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.79 7.77 -51.93 -0.40 0.38 16 36 H 0.10 0.83 7.77 -51.93 -0.40 0.43 16 37 H 0.10 0.81 7.25 -51.93 -0.38 0.43 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 41 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 42 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 43 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 44 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 2.22 6.02 -51.92 -0.31 1.90 16 47 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 50 H 0.02 0.37 7.62 -51.93 -0.40 -0.03 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -33.58 403.99 -10.55 -44.13 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.98 Total: 0.06 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.94 Total: -0.69 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.22 Total: -56.33 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.58 -10.55 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040936095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.971 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds