Wall clock time and date at job start Wed Apr 1 2020 03:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90130 * 2 1 4 4 N 1.40081 * 108.20401 * 180.02562 * 3 2 1 5 5 H 0.97004 * 126.03377 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92762 * 359.75745 * 4 3 2 7 7 C 1.50701 * 126.12562 * 180.23684 * 6 4 3 8 8 C 1.35315 * 107.74314 * 0.39014 * 6 4 3 9 9 C 1.50704 * 126.03593 * 179.87351 * 8 6 4 10 10 H 1.09004 * 109.46850 * 359.71360 * 9 8 6 11 11 C 1.52995 * 109.46823 * 119.71341 * 9 8 6 12 12 C 1.50696 * 109.46770 * 239.71441 * 9 8 6 13 13 O 1.21284 * 120.00472 * 349.70489 * 12 9 8 14 14 N 1.34782 * 119.99970 * 169.71155 * 12 9 8 15 15 C 1.47572 * 125.67875 * 184.64952 * 14 12 9 16 16 C 1.55462 * 104.90356 * 156.06372 * 15 14 12 17 17 C 1.53499 * 101.28830 * 35.66105 * 16 15 14 18 18 C 1.53467 * 111.80930 * 88.07449 * 17 16 15 19 19 C 1.54624 * 102.74563 * 154.35576 * 18 17 16 20 20 N 1.47157 * 107.33969 * 339.34607 * 19 18 17 21 21 C 1.36944 * 125.59567 * 179.11900 * 20 19 18 22 22 H 1.07999 * 119.99794 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99982 * 359.97438 * 21 20 19 24 24 N 1.31620 * 120.00203 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99635 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47237 * 59.99599 * 25 23 21 27 27 H 1.48501 * 109.46991 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47045 * 299.99545 * 25 23 21 29 29 C 1.47745 * 108.80392 * 359.08433 * 20 19 18 30 30 C 1.47451 * 125.67208 * 4.95274 * 14 12 9 31 31 H 1.09001 * 109.47208 * 269.97613 * 1 2 3 32 32 H 1.08999 * 109.46943 * 29.97644 * 1 2 3 33 33 H 1.08994 * 109.46988 * 149.97586 * 1 2 3 34 34 H 1.09000 * 109.47166 * 270.17799 * 7 6 4 35 35 H 1.09001 * 109.47258 * 30.18019 * 7 6 4 36 36 H 1.09003 * 109.46829 * 150.17858 * 7 6 4 37 37 H 1.09001 * 109.47196 * 67.13004 * 11 9 8 38 38 H 1.09007 * 109.46837 * 187.12651 * 11 9 8 39 39 H 1.08996 * 109.47587 * 307.12567 * 11 9 8 40 40 H 1.09008 * 110.32853 * 275.06050 * 15 14 12 41 41 H 1.09003 * 110.32865 * 37.27389 * 15 14 12 42 42 H 1.09000 * 111.25340 * 277.59819 * 16 15 14 43 43 H 1.08995 * 110.95775 * 153.59790 * 16 15 14 44 44 H 1.09002 * 110.75696 * 272.66888 * 18 17 16 45 45 H 1.09003 * 110.76031 * 35.85435 * 18 17 16 46 46 H 1.08998 * 109.87326 * 98.78457 * 19 18 17 47 47 H 1.08996 * 109.87095 * 219.76883 * 19 18 17 48 48 H 0.96994 * 119.99581 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.39885 * 263.54062 * 29 20 19 50 50 H 1.09004 * 110.39909 * 141.13683 * 29 20 19 51 51 H 1.08997 * 109.99716 * 301.55527 * 30 14 12 52 52 H 1.09001 * 109.99441 * 62.89209 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7155 0.0045 7 6 4.8350 -1.5990 0.0108 8 6 2.3271 -1.1331 -0.0006 9 6 1.8598 -2.5659 -0.0003 10 1 2.7243 -3.2299 -0.0005 11 6 1.0164 -2.8269 1.2491 12 6 1.0284 -2.8232 -1.2305 13 8 0.6776 -1.8967 -1.9302 14 7 0.6746 -4.0831 -1.5533 15 6 -0.0505 -4.4876 -2.7734 16 6 0.3243 -5.9816 -2.9842 17 6 0.4092 -6.4777 -1.5341 18 6 -0.9525 -6.9596 -1.0157 19 6 -0.5595 -7.9716 0.0854 20 7 0.8245 -8.3945 -0.1813 21 6 1.5494 -9.2743 0.5776 22 1 2.5625 -9.5219 0.2971 23 6 0.9821 -9.8476 1.7074 24 7 -0.2524 -9.5454 2.0495 25 14 1.9708 -11.0482 2.7421 26 1 3.1890 -10.3722 3.2560 27 1 1.1440 -11.5150 3.8840 28 1 2.3649 -12.2122 1.9085 29 6 1.3032 -7.7149 -1.4027 30 6 0.9419 -5.2856 -0.7431 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 5.1338 -1.8133 -1.0153 35 1 5.6489 -1.0905 0.5276 36 1 4.6053 -2.5324 0.5249 37 1 0.0899 -2.2561 1.1879 38 1 0.7845 -3.8900 1.3154 39 1 1.5738 -2.5209 2.1344 40 1 -1.1255 -4.3809 -2.6280 41 1 0.2783 -3.8913 -3.6245 42 1 1.2855 -6.0805 -3.4886 43 1 -0.4584 -6.5062 -3.5321 44 1 -1.5206 -6.1307 -0.5936 45 1 -1.5173 -7.4483 -1.8097 46 1 -0.6195 -7.4959 1.0643 47 1 -1.2257 -8.8336 0.0511 48 1 -0.6489 -9.9463 2.8387 49 1 1.1836 -8.3639 -2.2703 50 1 2.3462 -7.4195 -1.2891 51 1 2.0142 -5.3951 -0.5810 52 1 0.4254 -5.2127 0.2140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041745394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:06 Heat of formation + Delta-G solvation = 62.291498 kcal Electronic energy + Delta-G solvation = -32062.657033 eV Core-core repulsion = 28064.230077 eV Total energy + Delta-G solvation = -3998.426956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57755 -40.19999 -38.43999 -35.59249 -34.33405 -33.40962 -32.61680 -30.99224 -30.01254 -29.04849 -28.35307 -28.00237 -26.85228 -25.78157 -24.65216 -23.48570 -22.25840 -20.26954 -20.24678 -19.97944 -18.92628 -18.65260 -17.43156 -16.94087 -16.53267 -15.79514 -15.36376 -14.82824 -14.73771 -14.61990 -14.28469 -13.88974 -13.85711 -13.71781 -13.39424 -13.32385 -12.97153 -12.90569 -12.66436 -12.52377 -12.40586 -12.33505 -12.11617 -12.01557 -11.72034 -11.65798 -11.50061 -11.40817 -11.25676 -11.11988 -10.90974 -10.77254 -10.40792 -10.24783 -10.09370 -10.00930 -9.79017 -9.65324 -9.48430 -9.22534 -8.62623 -8.50055 -8.34549 -6.86231 -5.73823 -3.07398 1.78741 2.62938 2.78619 2.81409 3.23728 3.38104 3.42990 3.44082 4.46589 4.48842 4.53522 4.61158 4.78668 4.85894 4.91296 4.97304 5.10401 5.18179 5.25751 5.34016 5.37667 5.40992 5.43110 5.48527 5.61867 5.68010 5.69666 5.71859 5.76837 5.82259 5.86471 5.93748 6.00206 6.01581 6.08247 6.09818 6.16398 6.20747 6.22298 6.31558 6.41461 6.47817 6.53815 6.68986 6.70453 6.77951 7.22636 7.52880 7.58893 7.68875 7.69657 7.79937 8.22498 8.34144 9.19219 9.79287 10.45104 11.37554 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.002991 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.681934 B = 9360.044867 C =10330.387002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.118 3.882 3 N -0.306 5.306 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.091 3.909 7 C -0.096 4.096 8 C -0.214 4.214 9 C -0.025 4.025 10 H 0.097 0.903 11 C -0.147 4.147 12 C 0.534 3.466 13 O -0.537 6.537 14 N -0.617 5.617 15 C 0.110 3.890 16 C -0.119 4.119 17 C -0.083 4.083 18 C -0.131 4.131 19 C 0.178 3.822 20 N -0.605 5.605 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.151 3.849 30 C 0.122 3.878 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.252 0.748 49 H 0.024 0.976 50 H 0.040 0.960 51 H 0.070 0.930 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 15.097 -5.545 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 N -0.129 5.129 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.037 4.037 7 C -0.154 4.154 8 C -0.226 4.226 9 C -0.048 4.048 10 H 0.115 0.885 11 C -0.204 4.204 12 C 0.323 3.677 13 O -0.415 6.415 14 N -0.352 5.352 15 C -0.012 4.012 16 C -0.157 4.157 17 C -0.084 4.084 18 C -0.170 4.170 19 C 0.054 3.946 20 N -0.332 5.332 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.025 3.975 30 C -0.001 4.001 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.058 0.942 51 H 0.088 0.912 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.697 16.809 -5.682 18.354 hybrid contribution 0.996 -1.316 0.593 1.754 sum 5.693 15.493 -5.089 17.272 Atomic orbital electron populations 1.20421 0.86918 1.04513 1.02029 1.22047 0.96860 0.89637 0.96305 1.77274 0.86302 1.22348 1.26956 1.46050 1.07367 1.04563 1.60865 0.72140 1.20800 0.96669 0.85134 1.01135 1.20509 0.92835 0.98559 1.03546 1.19122 0.91185 0.94718 1.17538 1.19449 0.98580 0.92970 0.93779 0.88492 1.21886 0.99923 1.02910 0.95726 1.20234 0.80080 0.80901 0.86528 1.90651 1.55757 1.42045 1.53006 1.48755 1.57116 1.06513 1.22785 1.22286 0.96417 0.95164 0.87383 1.22648 1.02316 0.94159 0.96575 1.21558 0.98259 0.94877 0.93725 1.22760 0.94434 0.99695 1.00072 1.21216 0.85646 0.94029 0.93725 1.44577 1.11593 1.50890 1.26124 1.18987 0.95829 1.17008 1.03905 0.90561 1.24775 0.96560 1.00401 0.98530 1.69946 1.12969 1.46705 1.27237 0.86235 0.78899 0.80979 0.79838 1.21185 1.21641 1.21249 1.21297 0.95261 0.90266 0.90715 1.21964 1.00812 0.82696 0.94580 0.91222 0.91400 0.88859 0.90087 0.90995 0.89282 0.91912 0.90931 0.91419 0.91603 0.91025 0.90754 0.89831 0.92100 0.92063 0.93593 0.93974 0.93716 0.95869 0.94225 0.91194 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 8.58 36.01 0.31 -0.71 16 2 C 0.12 1.68 6.52 -82.40 -0.54 1.14 16 3 N -0.31 -4.37 12.70 33.67 0.43 -3.94 16 4 N -0.48 -5.37 7.36 33.48 0.25 -5.13 16 5 H 0.44 3.33 8.96 -182.61 -1.64 1.69 16 6 C 0.09 1.02 7.21 -82.26 -0.59 0.42 16 7 C -0.10 -0.72 10.06 36.01 0.36 -0.36 16 8 C -0.21 -2.81 4.46 -105.05 -0.47 -3.28 16 9 C -0.03 -0.31 2.29 -92.93 -0.21 -0.53 16 10 H 0.10 1.08 6.58 -51.93 -0.34 0.74 16 11 C -0.15 -1.71 8.80 37.15 0.33 -1.38 16 12 C 0.53 7.69 6.48 -10.98 -0.07 7.62 16 13 O -0.54 -9.11 13.42 5.55 0.07 -9.04 16 14 N -0.62 -8.46 3.34 -170.72 -0.57 -9.03 16 15 C 0.11 1.39 6.87 -2.15 -0.01 1.38 16 16 C -0.12 -1.46 6.07 -25.16 -0.15 -1.61 16 17 C -0.08 -1.25 0.61 -154.08 -0.09 -1.35 16 18 C -0.13 -2.20 5.79 -25.64 -0.15 -2.35 16 19 C 0.18 4.00 5.36 -2.83 -0.02 3.98 16 20 N -0.61 -14.22 3.41 -170.57 -0.58 -14.80 16 21 C -0.23 -6.01 10.28 -15.05 -0.15 -6.17 16 22 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -25.88 10.30 55.49 0.57 -25.31 16 25 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.15 2.79 6.26 -3.25 -0.02 2.77 16 30 C 0.12 1.74 5.15 -3.70 -0.02 1.72 16 31 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.29 4.89 -51.93 -0.25 1.04 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.64 7.15 -51.93 -0.37 0.27 16 37 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.07 0.88 5.54 -51.93 -0.29 0.59 16 39 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 42 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 44 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 45 H 0.06 0.97 7.80 -51.93 -0.40 0.56 16 46 H 0.05 1.14 7.39 -51.93 -0.38 0.76 16 47 H 0.04 1.07 7.49 -51.93 -0.39 0.68 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 50 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 51 H 0.07 0.99 7.42 -51.93 -0.39 0.61 16 52 H 0.08 1.20 5.78 -51.93 -0.30 0.90 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -32.44 395.57 -10.13 -42.57 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.64 Total: 1.43 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.60 Total: 1.05 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.09 Total: -58.20 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.44 -10.13 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041745394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.862 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds