Wall clock time and date at job start Wed Apr 1 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90130 * 2 1 4 4 N 1.40081 * 108.20401 * 180.02562 * 3 2 1 5 5 H 0.97004 * 126.03377 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92762 * 359.75745 * 4 3 2 7 7 C 1.50701 * 126.12562 * 180.23684 * 6 4 3 8 8 C 1.35315 * 107.74314 * 0.39014 * 6 4 3 9 9 C 1.50704 * 126.03593 * 179.87351 * 8 6 4 10 10 H 1.09004 * 109.46850 * 359.71360 * 9 8 6 11 11 C 1.52995 * 109.46823 * 119.71341 * 9 8 6 12 12 C 1.50696 * 109.46770 * 239.71441 * 9 8 6 13 13 O 1.21284 * 120.00472 * 349.70489 * 12 9 8 14 14 N 1.34782 * 119.99970 * 169.71155 * 12 9 8 15 15 C 1.47572 * 125.67875 * 184.64952 * 14 12 9 16 16 C 1.55462 * 104.90356 * 156.06372 * 15 14 12 17 17 C 1.53499 * 101.28830 * 35.66105 * 16 15 14 18 18 C 1.53467 * 111.80930 * 88.07449 * 17 16 15 19 19 C 1.54624 * 102.74563 * 154.35576 * 18 17 16 20 20 N 1.47157 * 107.33969 * 339.34607 * 19 18 17 21 21 C 1.36944 * 125.59567 * 179.11900 * 20 19 18 22 22 H 1.07999 * 119.99794 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99982 * 359.97438 * 21 20 19 24 24 N 1.31620 * 120.00203 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99635 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47237 * 59.99599 * 25 23 21 27 27 H 1.48501 * 109.46991 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47045 * 299.99545 * 25 23 21 29 29 C 1.47745 * 108.80392 * 359.08433 * 20 19 18 30 30 C 1.47451 * 125.67208 * 4.95274 * 14 12 9 31 31 H 1.09001 * 109.47208 * 269.97613 * 1 2 3 32 32 H 1.08999 * 109.46943 * 29.97644 * 1 2 3 33 33 H 1.08994 * 109.46988 * 149.97586 * 1 2 3 34 34 H 1.09000 * 109.47166 * 270.17799 * 7 6 4 35 35 H 1.09001 * 109.47258 * 30.18019 * 7 6 4 36 36 H 1.09003 * 109.46829 * 150.17858 * 7 6 4 37 37 H 1.09001 * 109.47196 * 67.13004 * 11 9 8 38 38 H 1.09007 * 109.46837 * 187.12651 * 11 9 8 39 39 H 1.08996 * 109.47587 * 307.12567 * 11 9 8 40 40 H 1.09008 * 110.32853 * 275.06050 * 15 14 12 41 41 H 1.09003 * 110.32865 * 37.27389 * 15 14 12 42 42 H 1.09000 * 111.25340 * 277.59819 * 16 15 14 43 43 H 1.08995 * 110.95775 * 153.59790 * 16 15 14 44 44 H 1.09002 * 110.75696 * 272.66888 * 18 17 16 45 45 H 1.09003 * 110.76031 * 35.85435 * 18 17 16 46 46 H 1.08998 * 109.87326 * 98.78457 * 19 18 17 47 47 H 1.08996 * 109.87095 * 219.76883 * 19 18 17 48 48 H 0.96994 * 119.99581 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.39885 * 263.54062 * 29 20 19 50 50 H 1.09004 * 110.39909 * 141.13683 * 29 20 19 51 51 H 1.08997 * 109.99716 * 301.55527 * 30 14 12 52 52 H 1.09001 * 109.99441 * 62.89209 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0011 6 6 3.6142 -0.7155 0.0045 7 6 4.8350 -1.5990 0.0108 8 6 2.3271 -1.1331 -0.0006 9 6 1.8598 -2.5659 -0.0003 10 1 2.7243 -3.2299 -0.0005 11 6 1.0164 -2.8269 1.2491 12 6 1.0284 -2.8232 -1.2305 13 8 0.6776 -1.8967 -1.9302 14 7 0.6746 -4.0831 -1.5533 15 6 -0.0505 -4.4876 -2.7734 16 6 0.3243 -5.9816 -2.9842 17 6 0.4092 -6.4777 -1.5341 18 6 -0.9525 -6.9596 -1.0157 19 6 -0.5595 -7.9716 0.0854 20 7 0.8245 -8.3945 -0.1813 21 6 1.5494 -9.2743 0.5776 22 1 2.5625 -9.5219 0.2971 23 6 0.9821 -9.8476 1.7074 24 7 -0.2524 -9.5454 2.0495 25 14 1.9708 -11.0482 2.7421 26 1 3.1890 -10.3722 3.2560 27 1 1.1440 -11.5150 3.8840 28 1 2.3649 -12.2122 1.9085 29 6 1.3032 -7.7149 -1.4027 30 6 0.9419 -5.2856 -0.7431 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 5.1338 -1.8133 -1.0153 35 1 5.6489 -1.0905 0.5276 36 1 4.6053 -2.5324 0.5249 37 1 0.0899 -2.2561 1.1879 38 1 0.7845 -3.8900 1.3154 39 1 1.5738 -2.5209 2.1344 40 1 -1.1255 -4.3809 -2.6280 41 1 0.2783 -3.8913 -3.6245 42 1 1.2855 -6.0805 -3.4886 43 1 -0.4584 -6.5062 -3.5321 44 1 -1.5206 -6.1307 -0.5936 45 1 -1.5173 -7.4483 -1.8097 46 1 -0.6195 -7.4959 1.0643 47 1 -1.2257 -8.8336 0.0511 48 1 -0.6489 -9.9463 2.8387 49 1 1.1836 -8.3639 -2.2703 50 1 2.3462 -7.4195 -1.2891 51 1 2.0142 -5.3951 -0.5810 52 1 0.4254 -5.2127 0.2140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041745394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:05 Heat of formation + Delta-G solvation = 42.504240 kcal Electronic energy + Delta-G solvation = -32063.515073 eV Core-core repulsion = 28064.230077 eV Total energy + Delta-G solvation = -3999.284996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51339 -41.37019 -39.70900 -37.05779 -35.33542 -34.41154 -34.18196 -32.24790 -31.18157 -30.46859 -29.68150 -28.96323 -27.66945 -27.28651 -26.02002 -24.81955 -23.33676 -22.02717 -21.16869 -20.99547 -20.21144 -19.67352 -18.72946 -18.41084 -17.58520 -16.95104 -16.67150 -16.34270 -15.94203 -15.73929 -15.55005 -15.47195 -14.91839 -14.66015 -14.55605 -14.29739 -14.12855 -13.91862 -13.75106 -13.65989 -13.49993 -13.36961 -13.24993 -13.10598 -13.08067 -12.91594 -12.73280 -12.68353 -12.51686 -12.48333 -12.32566 -12.19441 -12.01598 -11.76198 -11.48138 -11.37095 -11.32299 -11.14773 -10.64359 -10.60884 -10.16088 -9.57095 -9.32084 -8.79262 -7.76482 -5.10508 0.89738 1.51756 1.53510 1.59654 1.61513 1.72508 1.98047 2.18538 2.56199 3.40638 3.44537 3.62833 3.64754 3.70875 3.75693 3.80403 3.93863 4.17335 4.23033 4.24887 4.31880 4.36819 4.42838 4.46845 4.56126 4.65369 4.70728 4.74101 4.75669 4.79003 4.83468 4.85989 4.93706 4.94824 5.03470 5.05982 5.08721 5.12969 5.15072 5.16262 5.23448 5.28866 5.32493 5.39829 5.47331 5.55575 5.73487 5.76878 5.88068 6.28174 6.46658 6.58541 6.75889 7.19316 7.24460 7.87178 8.51297 9.33339 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.002991 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.681934 B = 9360.044867 C =10330.387002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.100 3.900 3 N -0.338 5.338 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.095 4.095 8 C -0.241 4.241 9 C -0.018 4.018 10 H 0.111 0.889 11 C -0.142 4.142 12 C 0.533 3.467 13 O -0.564 6.564 14 N -0.615 5.615 15 C 0.108 3.892 16 C -0.105 4.105 17 C -0.073 4.073 18 C -0.115 4.115 19 C 0.188 3.812 20 N -0.624 5.624 21 C -0.235 4.235 22 H 0.083 0.917 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.971 3.029 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.281 1.281 29 C 0.148 3.852 30 C 0.128 3.872 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.012 0.988 47 H 0.001 0.999 48 H 0.244 0.756 49 H 0.031 0.969 50 H 0.048 0.952 51 H 0.075 0.925 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 15.448 -6.615 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 N -0.162 5.162 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.153 4.153 8 C -0.253 4.253 9 C -0.041 4.041 10 H 0.129 0.871 11 C -0.199 4.199 12 C 0.322 3.678 13 O -0.443 6.443 14 N -0.348 5.348 15 C -0.014 4.014 16 C -0.143 4.143 17 C -0.075 4.075 18 C -0.154 4.154 19 C 0.063 3.937 20 N -0.351 5.351 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.257 4.257 24 N -0.600 5.600 25 Si 0.800 3.200 26 H -0.201 1.201 27 H -0.226 1.226 28 H -0.207 1.207 29 C 0.023 3.977 30 C 0.006 3.994 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.030 0.970 47 H 0.019 0.981 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.601 17.177 -6.788 19.613 hybrid contribution 0.463 -1.409 0.885 1.727 sum 7.064 15.767 -5.903 18.258 Atomic orbital electron populations 1.20375 0.86737 1.03712 1.02681 1.22291 0.97414 0.90235 0.96610 1.77192 0.87676 1.23030 1.28304 1.46091 1.07035 1.05056 1.60000 0.70454 1.21338 0.97374 0.85286 0.98836 1.20660 0.91874 0.98233 1.04572 1.19303 0.91981 0.94702 1.19292 1.19418 0.98684 0.93095 0.92866 0.87123 1.21836 0.99874 1.02297 0.95925 1.20580 0.79839 0.80587 0.86749 1.90642 1.56873 1.42773 1.54060 1.48758 1.56974 1.06151 1.22958 1.22375 0.96580 0.95370 0.87056 1.22617 1.03760 0.93534 0.94384 1.21420 0.96140 0.93825 0.96090 1.22595 0.95715 0.98502 0.98541 1.20935 0.84904 0.93542 0.94356 1.44850 1.11970 1.50840 1.27414 1.19392 0.96288 1.16801 1.03935 0.89887 1.25537 0.97561 1.02523 1.00089 1.70172 1.14454 1.47944 1.27384 0.85266 0.77653 0.79110 0.77990 1.20148 1.22609 1.20704 1.21480 0.96282 0.91163 0.88744 1.21819 1.00897 0.82658 0.94026 0.89851 0.91602 0.90095 0.89130 0.88559 0.88725 0.92315 0.91604 0.90561 0.91252 0.90697 0.89428 0.88110 0.90896 0.90512 0.97019 0.98050 0.94679 0.95143 0.93338 0.90699 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 8.58 71.24 0.61 -1.35 16 2 C 0.10 2.82 6.52 43.10 0.28 3.10 16 3 N -0.34 -9.49 12.70 -47.38 -0.60 -10.09 16 4 N -0.47 -9.85 7.36 -48.00 -0.35 -10.20 16 5 H 0.45 6.06 8.96 -213.33 -1.91 4.15 16 6 C 0.10 2.06 7.21 41.40 0.30 2.36 16 7 C -0.10 -1.13 10.06 71.24 0.72 -0.42 16 8 C -0.24 -6.05 4.46 -20.14 -0.09 -6.14 16 9 C -0.02 -0.43 2.29 -12.29 -0.03 -0.46 16 10 H 0.11 2.24 6.58 -2.38 -0.02 2.22 16 11 C -0.14 -3.19 8.80 71.98 0.63 -2.56 16 12 C 0.53 14.69 6.48 87.65 0.57 15.26 16 13 O -0.56 -18.74 13.42 -3.04 -0.04 -18.78 16 14 N -0.61 -15.69 3.34 -812.43 -2.72 -18.41 16 15 C 0.11 2.46 6.87 87.02 0.60 3.06 16 16 C -0.10 -2.22 6.07 31.61 0.19 -2.03 16 17 C -0.07 -2.06 0.61 -51.90 -0.03 -2.09 16 18 C -0.12 -3.72 5.79 31.30 0.18 -3.54 16 19 C 0.19 8.58 5.36 86.81 0.47 9.05 16 20 N -0.62 -29.24 3.41 -693.55 -2.36 -31.61 16 21 C -0.23 -12.33 10.28 84.03 0.86 -11.46 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 24 N -0.95 -55.12 10.30 21.65 0.22 -54.90 16 25 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 C 0.15 5.20 6.26 86.21 0.54 5.74 16 30 C 0.13 3.46 5.15 86.08 0.44 3.90 16 31 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.27 4.89 -2.39 -0.01 2.26 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.09 1.06 7.15 -2.39 -0.02 1.05 16 37 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 38 H 0.07 1.56 5.54 -2.38 -0.01 1.55 16 39 H 0.08 1.56 8.13 -2.39 -0.02 1.54 16 40 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 42 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 43 H 0.10 1.86 7.76 -2.39 -0.02 1.84 16 44 H 0.07 2.19 7.94 -2.39 -0.02 2.17 16 45 H 0.08 2.26 7.80 -2.39 -0.02 2.24 16 46 H 0.01 0.60 7.39 -2.39 -0.02 0.58 16 47 H 0.00 0.07 7.49 -2.39 -0.02 0.05 16 48 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.03 1.05 8.05 -2.39 -0.02 1.04 16 50 H 0.05 1.62 7.66 -2.38 -0.02 1.61 16 51 H 0.07 1.97 7.42 -2.39 -0.02 1.95 16 52 H 0.07 1.99 5.78 -2.39 -0.01 1.98 16 Total: -1.00 -71.77 395.57 1.91 -69.86 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.97 Total: 18.72 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.71 Total: 9.39 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.81 Total: -125.21 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.04 Total: -18.78 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.77 1.91 -69.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041745394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.363 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds