Wall clock time and date at job start Wed Apr 1 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30848 * 125.89713 * 2 1 4 4 N 1.40089 * 108.20363 * 180.25745 * 3 2 1 5 5 H 0.96998 * 126.03861 * 179.73588 * 4 3 2 6 6 C 1.34949 * 107.92348 * 359.71725 * 4 3 2 7 7 C 1.50699 * 126.12655 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74691 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03805 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.46928 * 3.71501 * 9 8 6 11 11 C 1.52997 * 109.46966 * 243.71679 * 9 8 6 12 12 C 1.50696 * 109.47087 * 123.71601 * 9 8 6 13 13 O 1.21281 * 120.00194 * 7.46094 * 12 9 8 14 14 N 1.34777 * 119.99937 * 187.46525 * 12 9 8 15 15 C 1.47168 * 125.59321 * 174.70445 * 14 12 9 16 16 C 1.54659 * 107.35118 * 180.88000 * 15 14 12 17 17 C 1.53310 * 102.71782 * 20.51159 * 16 15 14 18 18 C 1.53309 * 112.22162 * 88.16867 * 17 16 15 19 19 C 1.54666 * 102.71476 * 155.00399 * 18 17 16 20 20 N 1.47172 * 107.35055 * 339.49498 * 19 18 17 21 21 C 1.36936 * 125.59101 * 179.11932 * 20 19 18 22 22 H 1.08007 * 119.99713 * 179.97438 * 21 20 19 23 23 C 1.38805 * 119.99985 * 359.97282 * 21 20 19 24 24 N 1.31621 * 120.00522 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47045 * 60.00107 * 25 23 21 27 27 H 1.48501 * 109.47397 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47044 * 300.00507 * 25 23 21 29 29 C 1.47791 * 108.81407 * 359.09920 * 20 19 18 30 30 C 1.47781 * 125.59305 * 354.39633 * 14 12 9 31 31 H 1.08999 * 109.47658 * 275.83727 * 1 2 3 32 32 H 1.09007 * 109.47398 * 35.84055 * 1 2 3 33 33 H 1.08998 * 109.47166 * 155.83587 * 1 2 3 34 34 H 1.09005 * 109.47313 * 269.97582 * 7 6 4 35 35 H 1.09000 * 109.47024 * 29.97250 * 7 6 4 36 36 H 1.08997 * 109.47626 * 149.97355 * 7 6 4 37 37 H 1.09000 * 109.47027 * 302.91888 * 11 9 8 38 38 H 1.08995 * 109.47372 * 62.91681 * 11 9 8 39 39 H 1.09001 * 109.47131 * 182.91415 * 11 9 8 40 40 H 1.09000 * 109.87037 * 300.32683 * 15 14 12 41 41 H 1.09005 * 109.86960 * 61.30141 * 15 14 12 42 42 H 1.09005 * 110.76083 * 138.81323 * 16 15 14 43 43 H 1.08997 * 110.76586 * 262.01667 * 16 15 14 44 44 H 1.08995 * 110.76445 * 273.31404 * 18 17 16 45 45 H 1.09003 * 110.75778 * 36.51856 * 18 17 16 46 46 H 1.08998 * 109.86425 * 98.93645 * 19 18 17 47 47 H 1.09000 * 109.86605 * 219.91372 * 19 18 17 48 48 H 0.96993 * 120.00627 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.39612 * 263.37408 * 29 20 19 50 50 H 1.08993 * 110.39957 * 140.95800 * 29 20 19 51 51 H 1.09001 * 110.40386 * 276.64085 * 30 14 12 52 52 H 1.09003 * 110.40280 * 39.05722 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3908 1.2080 -0.0109 6 6 3.6142 -0.7153 -0.0032 7 6 4.8349 -1.5988 -0.0071 8 6 2.3271 -1.1329 0.0037 9 6 1.8599 -2.5657 0.0094 10 1 2.7226 -3.2289 0.0737 11 6 1.0886 -2.8557 -1.2798 12 6 0.9598 -2.7958 1.1959 13 8 0.6118 -1.8595 1.8838 14 7 0.5414 -4.0422 1.4927 15 6 -0.2442 -4.4226 2.6775 16 6 -0.4707 -5.9510 2.6095 17 6 0.6422 -6.4153 1.6628 18 6 1.9453 -6.7260 2.4082 19 6 2.6445 -7.7337 1.4659 20 7 1.6085 -8.3118 0.5951 21 6 1.8224 -9.2358 -0.3928 22 1 0.9924 -9.6006 -0.9797 23 6 3.1057 -9.7034 -0.6396 24 7 4.1172 -9.2592 0.0760 25 14 3.3973 -10.9643 -1.9867 26 1 2.9624 -10.4043 -3.2915 27 1 4.8431 -11.2980 -2.0479 28 1 2.6181 -12.1935 -1.6912 29 6 0.2995 -7.7320 0.9619 30 6 0.7909 -5.2499 0.6784 31 1 -0.3634 0.1045 1.0223 32 1 -0.3634 0.8331 -0.6018 33 1 -0.3633 -0.9376 -0.4207 34 1 5.1242 -1.8144 -1.0357 35 1 5.6536 -1.0896 0.5014 36 1 4.6101 -2.5316 0.5101 37 1 0.2560 -2.1581 -1.3697 38 1 1.7540 -2.7395 -2.1352 39 1 0.7065 -3.8762 -1.2528 40 1 0.3060 -4.1695 3.5838 41 1 -1.2026 -3.9032 2.6690 42 1 -0.3537 -6.4031 3.5944 43 1 -1.4533 -6.1780 2.1961 44 1 2.5474 -5.8251 2.5258 45 1 1.7374 -7.1793 3.3774 46 1 3.3915 -7.2189 0.8617 47 1 3.1201 -8.5202 2.0519 48 1 5.0139 -9.5862 -0.0963 49 1 -0.2334 -8.3968 1.6416 50 1 -0.2960 -7.5432 0.0688 51 1 0.0540 -5.3282 -0.1210 52 1 1.7995 -5.2283 0.2657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041745395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:09 Heat of formation + Delta-G solvation = 62.391588 kcal Electronic energy + Delta-G solvation = -32222.686077 eV Core-core repulsion = 28224.263461 eV Total energy + Delta-G solvation = -3998.422616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54381 -40.19324 -38.38050 -35.57831 -34.34664 -33.37399 -32.59234 -31.00180 -29.98030 -29.08812 -28.35989 -28.00983 -26.79708 -25.74019 -24.68128 -23.51234 -22.21554 -20.28924 -20.20917 -19.94198 -18.88008 -18.67030 -17.35587 -16.97080 -16.47958 -15.66514 -15.32106 -15.04031 -14.80879 -14.46275 -14.31729 -13.86430 -13.73341 -13.65284 -13.37425 -13.24867 -12.99027 -12.93230 -12.85007 -12.46850 -12.39373 -12.26593 -12.03535 -11.92991 -11.83360 -11.63843 -11.46763 -11.34669 -11.26776 -11.17920 -10.91480 -10.78019 -10.34044 -10.26889 -10.11247 -9.98470 -9.78138 -9.65744 -9.46396 -9.18380 -8.62675 -8.47196 -8.33204 -6.86594 -5.74125 -3.07653 1.82902 2.65993 2.82917 2.86454 3.25144 3.38046 3.43058 3.43740 4.46487 4.53206 4.57190 4.64287 4.78835 4.88461 4.94643 5.01535 5.12348 5.21994 5.29520 5.33376 5.35228 5.37511 5.41846 5.48300 5.66470 5.68388 5.72713 5.77017 5.81875 5.88121 5.89969 5.94748 5.97159 6.00985 6.04832 6.09593 6.12604 6.22132 6.25038 6.28675 6.43226 6.48902 6.56584 6.70040 6.72533 6.77054 7.26354 7.52619 7.58222 7.70856 7.72496 7.79254 8.21913 8.38539 9.18875 9.78981 10.44827 11.37224 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003190 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.719579 B = 8775.576347 C = 9986.124903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.118 3.882 3 N -0.307 5.307 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.094 3.906 7 C -0.097 4.097 8 C -0.215 4.215 9 C -0.027 4.027 10 H 0.100 0.900 11 C -0.148 4.148 12 C 0.534 3.466 13 O -0.538 6.538 14 N -0.617 5.617 15 C 0.113 3.887 16 C -0.118 4.118 17 C -0.083 4.083 18 C -0.129 4.129 19 C 0.179 3.821 20 N -0.605 5.605 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.151 3.849 30 C 0.122 3.878 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.252 0.748 49 H 0.024 0.976 50 H 0.041 0.959 51 H 0.070 0.930 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 14.632 1.049 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 N -0.130 5.130 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.035 4.035 7 C -0.155 4.155 8 C -0.227 4.227 9 C -0.049 4.049 10 H 0.118 0.882 11 C -0.205 4.205 12 C 0.322 3.678 13 O -0.414 6.414 14 N -0.352 5.352 15 C -0.009 4.009 16 C -0.156 4.156 17 C -0.085 4.085 18 C -0.167 4.167 19 C 0.055 3.945 20 N -0.332 5.332 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.025 3.975 30 C 0.000 4.000 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.059 0.941 51 H 0.089 0.911 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.867 16.368 1.310 16.870 hybrid contribution 0.815 -1.369 -0.606 1.705 sum -3.051 14.999 0.704 15.322 Atomic orbital electron populations 1.20288 0.86938 1.02168 1.03425 1.22033 0.96813 0.89695 0.96379 1.77261 0.86331 1.22307 1.27117 1.46046 1.07336 1.04587 1.60861 0.72120 1.20825 0.96724 0.85097 1.00820 1.20523 0.92760 0.98564 1.03685 1.19088 0.91195 0.94683 1.17726 1.19458 0.98316 0.93135 0.93981 0.88206 1.21942 1.00528 1.02499 0.95563 1.20236 0.80622 0.80924 0.85976 1.90657 1.57553 1.40932 1.52298 1.48688 1.54362 1.07387 1.24717 1.21918 0.95380 0.95254 0.88394 1.22431 0.99117 0.93526 1.00531 1.21619 0.96103 0.95388 0.95374 1.22656 0.95286 0.99973 0.98829 1.21215 0.90080 0.92888 0.90340 1.44583 1.01061 1.48425 1.39101 1.18994 0.93171 1.14926 1.08542 0.90525 1.24768 0.95660 1.00264 0.99588 1.69946 0.98929 1.46324 1.41733 0.86237 0.76887 0.81285 0.81558 1.21170 1.21661 1.21242 1.21223 0.89940 0.90233 0.96153 1.22181 1.02033 0.82450 0.93325 0.89629 0.91881 0.90795 0.89821 0.91022 0.89310 0.91809 0.91394 0.91195 0.91893 0.91910 0.90059 0.90634 0.92281 0.92179 0.93670 0.94018 0.93753 0.95826 0.94107 0.91142 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 8.67 36.00 0.31 -0.57 16 2 C 0.12 1.69 6.51 -82.41 -0.54 1.15 16 3 N -0.31 -4.45 12.70 33.67 0.43 -4.02 16 4 N -0.48 -5.58 7.36 33.48 0.25 -5.33 16 5 H 0.44 3.53 8.96 -182.61 -1.64 1.89 16 6 C 0.09 1.11 7.21 -82.26 -0.59 0.51 16 7 C -0.10 -0.84 10.09 36.01 0.36 -0.47 16 8 C -0.22 -2.91 4.49 -105.05 -0.47 -3.38 16 9 C -0.03 -0.34 2.18 -92.93 -0.20 -0.54 16 10 H 0.10 1.23 6.27 -51.93 -0.33 0.90 16 11 C -0.15 -1.67 8.96 37.16 0.33 -1.34 16 12 C 0.53 7.83 6.63 -10.99 -0.07 7.75 16 13 O -0.54 -9.21 13.55 5.56 0.08 -9.14 16 14 N -0.62 -8.53 3.34 -170.91 -0.57 -9.10 16 15 C 0.11 1.45 6.87 -2.81 -0.02 1.43 16 16 C -0.12 -1.44 5.97 -25.70 -0.15 -1.59 16 17 C -0.08 -1.26 0.62 -154.02 -0.10 -1.36 16 18 C -0.13 -2.20 5.92 -25.70 -0.15 -2.35 16 19 C 0.18 4.02 5.38 -2.80 -0.02 4.01 16 20 N -0.61 -14.19 3.41 -170.59 -0.58 -14.77 16 21 C -0.23 -5.98 10.28 -15.06 -0.15 -6.13 16 22 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -25.78 10.30 55.49 0.57 -25.21 16 25 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.15 2.78 6.28 -3.31 -0.02 2.76 16 30 C 0.12 1.74 4.27 -3.20 -0.01 1.73 16 31 H 0.09 1.17 7.33 -51.93 -0.38 0.79 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.88 5.00 -51.93 -0.26 0.62 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.81 7.09 -51.93 -0.37 0.44 16 37 H 0.06 0.70 5.42 -51.93 -0.28 0.42 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.79 5.54 -51.93 -0.29 0.50 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.93 7.78 -51.93 -0.40 0.53 16 43 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 45 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 46 H 0.05 1.12 7.39 -51.93 -0.38 0.73 16 47 H 0.04 1.06 7.49 -51.93 -0.39 0.67 16 48 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 50 H 0.04 0.73 7.80 -51.93 -0.41 0.32 16 51 H 0.07 0.96 6.94 -51.93 -0.36 0.60 16 52 H 0.08 1.28 7.21 -51.93 -0.37 0.91 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -32.27 394.54 -10.10 -42.36 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -9.60 Total: 1.75 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.59 Total: 1.32 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.09 Total: -58.44 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.27 -10.10 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041745395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.754 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds