Wall clock time and date at job start Wed Apr 1 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30848 * 125.89713 * 2 1 4 4 N 1.40089 * 108.20363 * 180.25745 * 3 2 1 5 5 H 0.96998 * 126.03861 * 179.73588 * 4 3 2 6 6 C 1.34949 * 107.92348 * 359.71725 * 4 3 2 7 7 C 1.50699 * 126.12655 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74691 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03805 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.46928 * 3.71501 * 9 8 6 11 11 C 1.52997 * 109.46966 * 243.71679 * 9 8 6 12 12 C 1.50696 * 109.47087 * 123.71601 * 9 8 6 13 13 O 1.21281 * 120.00194 * 7.46094 * 12 9 8 14 14 N 1.34777 * 119.99937 * 187.46525 * 12 9 8 15 15 C 1.47168 * 125.59321 * 174.70445 * 14 12 9 16 16 C 1.54659 * 107.35118 * 180.88000 * 15 14 12 17 17 C 1.53310 * 102.71782 * 20.51159 * 16 15 14 18 18 C 1.53309 * 112.22162 * 88.16867 * 17 16 15 19 19 C 1.54666 * 102.71476 * 155.00399 * 18 17 16 20 20 N 1.47172 * 107.35055 * 339.49498 * 19 18 17 21 21 C 1.36936 * 125.59101 * 179.11932 * 20 19 18 22 22 H 1.08007 * 119.99713 * 179.97438 * 21 20 19 23 23 C 1.38805 * 119.99985 * 359.97282 * 21 20 19 24 24 N 1.31621 * 120.00522 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47045 * 60.00107 * 25 23 21 27 27 H 1.48501 * 109.47397 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47044 * 300.00507 * 25 23 21 29 29 C 1.47791 * 108.81407 * 359.09920 * 20 19 18 30 30 C 1.47781 * 125.59305 * 354.39633 * 14 12 9 31 31 H 1.08999 * 109.47658 * 275.83727 * 1 2 3 32 32 H 1.09007 * 109.47398 * 35.84055 * 1 2 3 33 33 H 1.08998 * 109.47166 * 155.83587 * 1 2 3 34 34 H 1.09005 * 109.47313 * 269.97582 * 7 6 4 35 35 H 1.09000 * 109.47024 * 29.97250 * 7 6 4 36 36 H 1.08997 * 109.47626 * 149.97355 * 7 6 4 37 37 H 1.09000 * 109.47027 * 302.91888 * 11 9 8 38 38 H 1.08995 * 109.47372 * 62.91681 * 11 9 8 39 39 H 1.09001 * 109.47131 * 182.91415 * 11 9 8 40 40 H 1.09000 * 109.87037 * 300.32683 * 15 14 12 41 41 H 1.09005 * 109.86960 * 61.30141 * 15 14 12 42 42 H 1.09005 * 110.76083 * 138.81323 * 16 15 14 43 43 H 1.08997 * 110.76586 * 262.01667 * 16 15 14 44 44 H 1.08995 * 110.76445 * 273.31404 * 18 17 16 45 45 H 1.09003 * 110.75778 * 36.51856 * 18 17 16 46 46 H 1.08998 * 109.86425 * 98.93645 * 19 18 17 47 47 H 1.09000 * 109.86605 * 219.91372 * 19 18 17 48 48 H 0.96993 * 120.00627 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.39612 * 263.37408 * 29 20 19 50 50 H 1.08993 * 110.39957 * 140.95800 * 29 20 19 51 51 H 1.09001 * 110.40386 * 276.64085 * 30 14 12 52 52 H 1.09003 * 110.40280 * 39.05722 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3908 1.2080 -0.0109 6 6 3.6142 -0.7153 -0.0032 7 6 4.8349 -1.5988 -0.0071 8 6 2.3271 -1.1329 0.0037 9 6 1.8599 -2.5657 0.0094 10 1 2.7226 -3.2289 0.0737 11 6 1.0886 -2.8557 -1.2798 12 6 0.9598 -2.7958 1.1959 13 8 0.6118 -1.8595 1.8838 14 7 0.5414 -4.0422 1.4927 15 6 -0.2442 -4.4226 2.6775 16 6 -0.4707 -5.9510 2.6095 17 6 0.6422 -6.4153 1.6628 18 6 1.9453 -6.7260 2.4082 19 6 2.6445 -7.7337 1.4659 20 7 1.6085 -8.3118 0.5951 21 6 1.8224 -9.2358 -0.3928 22 1 0.9924 -9.6006 -0.9797 23 6 3.1057 -9.7034 -0.6396 24 7 4.1172 -9.2592 0.0760 25 14 3.3973 -10.9643 -1.9867 26 1 2.9624 -10.4043 -3.2915 27 1 4.8431 -11.2980 -2.0479 28 1 2.6181 -12.1935 -1.6912 29 6 0.2995 -7.7320 0.9619 30 6 0.7909 -5.2499 0.6784 31 1 -0.3634 0.1045 1.0223 32 1 -0.3634 0.8331 -0.6018 33 1 -0.3633 -0.9376 -0.4207 34 1 5.1242 -1.8144 -1.0357 35 1 5.6536 -1.0896 0.5014 36 1 4.6101 -2.5316 0.5101 37 1 0.2560 -2.1581 -1.3697 38 1 1.7540 -2.7395 -2.1352 39 1 0.7065 -3.8762 -1.2528 40 1 0.3060 -4.1695 3.5838 41 1 -1.2026 -3.9032 2.6690 42 1 -0.3537 -6.4031 3.5944 43 1 -1.4533 -6.1780 2.1961 44 1 2.5474 -5.8251 2.5258 45 1 1.7374 -7.1793 3.3774 46 1 3.3915 -7.2189 0.8617 47 1 3.1201 -8.5202 2.0519 48 1 5.0139 -9.5862 -0.0963 49 1 -0.2334 -8.3968 1.6416 50 1 -0.2960 -7.5432 0.0688 51 1 0.0540 -5.3282 -0.1210 52 1 1.7995 -5.2283 0.2657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041745395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:08 Heat of formation + Delta-G solvation = 42.802245 kcal Electronic energy + Delta-G solvation = -32223.535535 eV Core-core repulsion = 28224.263461 eV Total energy + Delta-G solvation = -3999.272073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.51779 -41.37568 -39.66368 -37.05138 -35.36614 -34.39951 -34.18440 -32.26287 -31.16539 -30.53898 -29.67403 -28.98550 -27.67252 -27.25012 -26.05370 -24.84393 -23.30430 -22.04537 -21.16789 -20.98723 -20.18508 -19.71026 -18.73401 -18.36238 -17.61520 -16.76683 -16.67498 -16.41501 -16.06993 -15.90186 -15.51673 -15.29824 -14.82862 -14.61537 -14.48206 -14.38968 -14.19783 -14.02895 -13.76616 -13.69513 -13.49600 -13.38270 -13.30820 -13.03936 -12.99172 -12.89182 -12.79341 -12.69895 -12.52406 -12.43045 -12.35135 -12.23298 -12.01737 -11.77011 -11.47502 -11.35817 -11.29886 -11.14872 -10.63944 -10.60990 -10.16032 -9.56337 -9.33060 -8.79179 -7.76197 -5.10154 0.88641 1.52169 1.53722 1.59728 1.61777 1.75697 1.97331 2.17488 2.56447 3.41172 3.44377 3.60634 3.66716 3.71963 3.74463 3.84315 3.93669 4.10908 4.23111 4.26496 4.31303 4.39451 4.41441 4.43279 4.44797 4.63625 4.69010 4.74882 4.78719 4.80915 4.86459 4.88567 4.91104 4.96300 5.03062 5.04940 5.08094 5.11764 5.12963 5.15779 5.20721 5.33707 5.35152 5.39779 5.46769 5.55831 5.74242 5.75511 5.87203 6.28028 6.45151 6.58674 6.75128 7.19490 7.26583 7.87211 8.51483 9.33630 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003190 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.719579 B = 8775.576347 C = 9986.124903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.102 3.898 3 N -0.336 5.336 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.100 3.900 7 C -0.095 4.095 8 C -0.241 4.241 9 C -0.021 4.021 10 H 0.102 0.898 11 C -0.143 4.143 12 C 0.532 3.468 13 O -0.564 6.564 14 N -0.615 5.615 15 C 0.112 3.888 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.113 4.113 19 C 0.190 3.810 20 N -0.624 5.624 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.063 4.063 24 N -0.950 5.950 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.281 1.281 29 C 0.148 3.852 30 C 0.129 3.871 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.013 0.987 47 H 0.000 1.000 48 H 0.244 0.756 49 H 0.031 0.969 50 H 0.051 0.949 51 H 0.083 0.917 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 14.879 0.755 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 N -0.160 5.160 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.030 4.030 7 C -0.154 4.154 8 C -0.252 4.252 9 C -0.044 4.044 10 H 0.120 0.880 11 C -0.200 4.200 12 C 0.322 3.678 13 O -0.443 6.443 14 N -0.348 5.348 15 C -0.011 4.011 16 C -0.142 4.142 17 C -0.077 4.077 18 C -0.151 4.151 19 C 0.065 3.935 20 N -0.351 5.351 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.599 5.599 25 Si 0.799 3.201 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.208 1.208 29 C 0.023 3.977 30 C 0.007 3.993 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.031 0.969 47 H 0.019 0.981 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.949 16.627 1.018 17.378 hybrid contribution 1.147 -1.445 -0.492 1.909 sum -3.802 15.183 0.527 15.660 Atomic orbital electron populations 1.20252 0.86383 1.02949 1.02729 1.22313 0.97525 0.90049 0.96546 1.77183 0.87559 1.22993 1.28291 1.46078 1.07106 1.04923 1.60055 0.70469 1.21276 0.97331 0.85331 0.99038 1.20628 0.92037 0.97820 1.04876 1.19295 0.91930 0.94815 1.19184 1.19433 0.98129 0.92983 0.93814 0.87978 1.21911 1.00595 1.02422 0.95104 1.20550 0.80450 0.80701 0.86117 1.90649 1.58623 1.41688 1.53315 1.48690 1.54212 1.07000 1.24945 1.22010 0.95611 0.95655 0.87790 1.22405 0.98619 0.92750 1.00455 1.21490 0.96089 0.94273 0.95815 1.22473 0.95851 0.98637 0.98178 1.20918 0.89985 0.92465 0.90148 1.44851 1.03309 1.48226 1.38670 1.19394 0.93307 1.14883 1.08784 0.89872 1.25517 0.95738 1.02469 1.01914 1.70166 0.98800 1.47663 1.43305 0.85277 0.76055 0.79244 0.79500 1.20204 1.22557 1.20771 1.21406 0.87847 0.91426 0.96985 1.22076 1.01674 0.82241 0.93348 0.91080 0.90657 0.90310 0.88305 0.88911 0.89876 0.91612 0.90635 0.91207 0.92203 0.90987 0.88688 0.88657 0.91505 0.90915 0.96913 0.98150 0.94681 0.95076 0.93038 0.89939 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 8.67 71.23 0.62 -1.00 16 2 C 0.10 2.88 6.51 43.10 0.28 3.16 16 3 N -0.34 -9.61 12.70 -47.39 -0.60 -10.21 16 4 N -0.47 -10.46 7.36 -48.00 -0.35 -10.81 16 5 H 0.45 6.69 8.96 -213.33 -1.91 4.77 16 6 C 0.10 2.23 7.21 41.41 0.30 2.53 16 7 C -0.10 -1.47 10.09 71.24 0.72 -0.76 16 8 C -0.24 -6.33 4.49 -20.14 -0.09 -6.42 16 9 C -0.02 -0.53 2.18 -12.29 -0.03 -0.55 16 10 H 0.10 2.44 6.27 -2.38 -0.01 2.42 16 11 C -0.14 -3.06 8.96 71.98 0.64 -2.41 16 12 C 0.53 15.03 6.63 87.66 0.58 15.61 16 13 O -0.56 -18.96 13.55 -3.03 -0.04 -19.00 16 14 N -0.61 -15.86 3.34 -813.04 -2.72 -18.57 16 15 C 0.11 2.55 6.87 86.82 0.60 3.15 16 16 C -0.10 -2.19 5.97 31.26 0.19 -2.00 16 17 C -0.08 -2.12 0.62 -51.87 -0.03 -2.15 16 18 C -0.11 -3.73 5.92 31.27 0.19 -3.55 16 19 C 0.19 8.68 5.38 86.82 0.47 9.15 16 20 N -0.62 -29.14 3.41 -693.64 -2.37 -31.51 16 21 C -0.23 -12.26 10.28 84.03 0.86 -11.40 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 24 N -0.95 -54.71 10.30 21.65 0.22 -54.49 16 25 Si 0.97 43.86 29.55 68.60 2.03 45.89 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 29 C 0.15 5.16 6.28 86.15 0.54 5.70 16 30 C 0.13 3.43 4.27 86.23 0.37 3.80 16 31 H 0.07 1.97 7.33 -2.39 -0.02 1.95 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.08 1.83 5.00 -2.39 -0.01 1.81 16 34 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.42 7.09 -2.39 -0.02 1.40 16 37 H 0.07 1.37 5.42 -2.39 -0.01 1.35 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.47 5.54 -2.39 -0.01 1.46 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.09 1.80 7.78 -2.38 -0.02 1.78 16 43 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 44 H 0.07 2.11 8.01 -2.39 -0.02 2.09 16 45 H 0.07 2.23 7.82 -2.39 -0.02 2.21 16 46 H 0.01 0.65 7.39 -2.39 -0.02 0.63 16 47 H 0.00 0.01 7.49 -2.39 -0.02 0.00 16 48 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.03 1.07 8.07 -2.39 -0.02 1.05 16 50 H 0.05 1.70 7.80 -2.39 -0.02 1.68 16 51 H 0.08 2.04 6.94 -2.39 -0.02 2.02 16 52 H 0.07 2.06 7.21 -2.39 -0.02 2.05 16 Total: -1.00 -70.86 394.54 1.87 -69.00 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.97 Total: 19.79 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.67 Total: 9.91 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.81 Total: -125.58 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.04 Total: -19.00 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.86 1.87 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041745395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.800 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds