Wall clock time and date at job start Wed Apr 1 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30839 * 125.89750 * 2 1 4 4 N 1.40090 * 108.20367 * 179.73779 * 3 2 1 5 5 H 0.96997 * 126.03442 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92457 * 0.02562 * 4 3 2 7 7 C 1.50705 * 126.12722 * 179.97438 * 6 4 3 8 8 C 1.35319 * 107.74980 * 0.02562 * 6 4 3 9 9 C 1.50700 * 126.04062 * 180.02562 * 8 6 4 10 10 H 1.09001 * 109.47180 * 357.96628 * 9 8 6 11 11 C 1.52999 * 109.47064 * 117.96725 * 9 8 6 12 12 C 1.50704 * 109.46749 * 237.96781 * 9 8 6 13 13 O 1.21274 * 120.00125 * 334.29493 * 12 9 8 14 14 N 1.34773 * 119.99768 * 154.29828 * 12 9 8 15 15 C 1.47570 * 125.67560 * 4.63164 * 14 12 9 16 16 C 1.55435 * 104.88262 * 156.03285 * 15 14 12 17 17 C 1.53656 * 101.30749 * 35.82570 * 16 15 14 18 18 C 1.53660 * 111.42012 * 204.77133 * 17 16 15 19 19 C 1.55187 * 101.41702 * 272.73808 * 18 17 16 20 20 N 1.47565 * 105.00881 * 324.50417 * 19 18 17 21 21 C 1.36938 * 125.67258 * 203.82592 * 20 19 18 22 22 H 1.08002 * 119.99668 * 167.64679 * 21 20 19 23 23 C 1.38811 * 120.00242 * 347.64367 * 21 20 19 24 24 N 1.31620 * 119.99765 * 0.16793 * 23 21 20 25 25 Si 1.86799 * 119.99952 * 180.15586 * 23 21 20 26 26 H 1.48503 * 109.46843 * 94.98424 * 25 23 21 27 27 H 1.48493 * 109.47157 * 214.98371 * 25 23 21 28 28 H 1.48496 * 109.47076 * 334.99022 * 25 23 21 29 29 C 1.47401 * 108.64709 * 23.86533 * 20 19 18 30 30 C 1.47401 * 125.67703 * 184.94434 * 14 12 9 31 31 H 1.09008 * 109.47294 * 84.83852 * 1 2 3 32 32 H 1.08994 * 109.47178 * 204.83500 * 1 2 3 33 33 H 1.08995 * 109.47378 * 324.84036 * 1 2 3 34 34 H 1.09007 * 109.46487 * 89.97815 * 7 6 4 35 35 H 1.09000 * 109.47343 * 209.97625 * 7 6 4 36 36 H 1.08997 * 109.47177 * 329.98416 * 7 6 4 37 37 H 1.09004 * 109.46964 * 62.15807 * 11 9 8 38 38 H 1.08997 * 109.47164 * 182.15047 * 11 9 8 39 39 H 1.08999 * 109.47476 * 302.15371 * 11 9 8 40 40 H 1.08995 * 110.33193 * 275.02456 * 15 14 12 41 41 H 1.08997 * 110.33100 * 37.25744 * 15 14 12 42 42 H 1.09000 * 111.25265 * 277.75931 * 16 15 14 43 43 H 1.08989 * 110.95201 * 153.76534 * 16 15 14 44 44 H 1.08996 * 111.03504 * 30.77388 * 18 17 16 45 45 H 1.08996 * 111.03240 * 154.70738 * 18 17 16 46 46 H 1.09005 * 110.33292 * 205.62259 * 19 18 17 47 47 H 1.08998 * 110.42250 * 83.43218 * 19 18 17 48 48 H 0.97005 * 119.99762 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.98237 * 238.53305 * 29 20 19 50 50 H 1.08998 * 109.98392 * 117.23401 * 29 20 19 51 51 H 1.09005 * 109.98525 * 301.45343 * 30 14 12 52 52 H 1.08996 * 109.98699 * 62.71834 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6341 0.0061 5 1 4.3908 1.2080 0.0078 6 6 3.6142 -0.7153 0.0092 7 6 4.8350 -1.5989 0.0153 8 6 2.3271 -1.1331 0.0046 9 6 1.8599 -2.5658 0.0063 10 1 2.7238 -3.2297 -0.0245 11 6 1.0530 -2.8375 1.2776 12 6 0.9930 -2.8129 -1.2014 13 8 0.3948 -1.8926 -1.7169 14 7 0.8826 -4.0567 -1.7085 15 6 1.4735 -5.2782 -1.1283 16 6 0.5938 -6.4414 -1.6661 17 6 0.2633 -5.9401 -3.0805 18 6 -1.0412 -6.5601 -3.6050 19 6 -0.5214 -7.8766 -4.2414 20 7 0.7949 -7.5315 -4.8122 21 6 1.4193 -8.1924 -5.8362 22 1 2.2807 -7.7526 -6.3169 23 6 0.9454 -9.4277 -6.2562 24 7 -0.1062 -9.9621 -5.6725 25 14 1.8000 -10.3311 -7.6500 26 1 2.7801 -11.2948 -7.0878 27 1 0.7915 -11.0644 -8.4564 28 1 2.5079 -9.3524 -8.5137 29 6 1.3259 -6.3576 -4.0962 30 6 0.1571 -4.4224 -2.9383 31 1 -0.3634 0.0925 -1.0236 32 1 -0.3633 -0.9326 0.4316 33 1 -0.3634 0.8401 0.5918 34 1 5.1260 -1.8093 1.0445 35 1 4.6092 -2.5343 -0.4968 36 1 5.6528 -1.0923 -0.4971 37 1 0.1686 -2.2005 1.2896 38 1 0.7475 -3.8836 1.2973 39 1 1.6680 -2.6220 2.1513 40 1 2.5049 -5.3947 -1.4608 41 1 1.4274 -5.2411 -0.0399 42 1 -0.3119 -6.5594 -1.0713 43 1 1.1591 -7.3725 -1.7031 44 1 -1.7323 -6.7668 -2.7880 45 1 -1.5048 -5.9195 -4.3551 46 1 -1.1991 -8.2109 -5.0270 47 1 -0.4135 -8.6500 -3.4809 48 1 -0.4372 -10.8255 -5.9658 49 1 1.5097 -5.5446 -4.7986 50 1 2.2498 -6.6217 -3.5817 51 1 -0.8892 -4.1285 -2.8550 52 1 0.6135 -3.9341 -3.7993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041745396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:12 Heat of formation + Delta-G solvation = 41.120597 kcal Electronic energy + Delta-G solvation = -31610.420625 eV Core-core repulsion = 27611.075630 eV Total energy + Delta-G solvation = -3999.344995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48871 -41.34947 -39.70114 -37.09958 -35.27627 -34.48789 -34.16231 -32.07382 -31.12378 -30.67700 -29.75187 -28.97303 -27.66984 -27.43771 -25.86449 -24.32987 -23.75584 -22.21055 -21.14682 -21.02907 -20.19344 -19.53100 -18.80996 -18.24722 -17.64362 -16.87592 -16.77235 -16.41078 -16.00075 -15.74603 -15.68866 -15.39693 -15.05054 -14.58536 -14.32734 -14.20414 -14.12049 -13.90484 -13.80065 -13.64159 -13.50017 -13.34282 -13.27080 -13.11281 -13.00268 -12.91317 -12.88523 -12.68961 -12.60015 -12.46682 -12.32427 -12.15503 -11.98558 -11.80081 -11.49119 -11.41546 -11.27599 -11.20184 -10.67177 -10.58536 -10.14368 -9.56430 -9.30936 -8.80086 -7.84554 -5.21210 0.91516 1.47357 1.48167 1.57411 1.60249 1.82488 2.00651 2.18006 2.50594 3.30898 3.47923 3.61592 3.68198 3.70053 3.77713 3.78730 3.95119 4.15130 4.27017 4.27929 4.32991 4.33435 4.43353 4.46830 4.50864 4.67840 4.68658 4.75776 4.79371 4.80650 4.80949 4.91026 4.93366 4.97530 5.01505 5.07758 5.10144 5.11988 5.16199 5.20183 5.23855 5.29810 5.39934 5.43164 5.44894 5.49303 5.67433 5.78664 5.81226 6.25506 6.48183 6.66566 6.77651 7.12238 7.30384 7.79109 8.46164 9.25746 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002382 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.232680 B =11752.568373 C =12258.454729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.099 3.901 3 N -0.343 5.343 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.103 3.897 7 C -0.095 4.095 8 C -0.247 4.247 9 C -0.014 4.014 10 H 0.118 0.882 11 C -0.139 4.139 12 C 0.527 3.473 13 O -0.569 6.569 14 N -0.616 5.616 15 C 0.102 3.898 16 C -0.109 4.109 17 C -0.071 4.071 18 C -0.119 4.119 19 C 0.181 3.819 20 N -0.626 5.626 21 C -0.242 4.242 22 H 0.075 0.925 23 C -0.061 4.061 24 N -0.946 5.946 25 Si 0.975 3.025 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.271 1.271 29 C 0.152 3.848 30 C 0.134 3.866 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.004 0.996 48 H 0.248 0.752 49 H 0.015 0.985 50 H 0.031 0.969 51 H 0.067 0.933 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 14.972 19.160 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 N -0.167 5.167 4 N -0.184 5.184 5 H 0.295 0.705 6 C -0.027 4.027 7 C -0.153 4.153 8 C -0.258 4.258 9 C -0.037 4.037 10 H 0.136 0.864 11 C -0.197 4.197 12 C 0.317 3.683 13 O -0.448 6.448 14 N -0.350 5.350 15 C -0.020 4.020 16 C -0.147 4.147 17 C -0.072 4.072 18 C -0.158 4.158 19 C 0.056 3.944 20 N -0.352 5.352 21 C -0.371 4.371 22 H 0.093 0.907 23 C -0.254 4.254 24 N -0.595 5.595 25 Si 0.803 3.197 26 H -0.212 1.212 27 H -0.221 1.221 28 H -0.196 1.196 29 C 0.027 3.973 30 C 0.011 3.989 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.022 0.978 48 H 0.057 0.943 49 H 0.033 0.967 50 H 0.049 0.951 51 H 0.086 0.914 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.189 16.655 18.800 26.125 hybrid contribution 0.523 -1.148 -1.522 1.977 sum 7.712 15.507 17.278 24.464 Atomic orbital electron populations 1.20242 0.86587 1.02664 1.02410 1.22375 0.97479 0.90375 0.96435 1.77220 0.87757 1.23253 1.28484 1.46138 1.07008 1.05261 1.59956 0.70546 1.21416 0.97519 0.85191 0.98597 1.20677 0.91482 0.97909 1.05207 1.19374 0.91726 0.95037 1.19707 1.19474 0.98525 0.92853 0.92817 0.86405 1.21855 1.00082 1.02708 0.95027 1.20941 0.81661 0.80267 0.85456 1.90672 1.48274 1.43051 1.62816 1.48768 1.52990 1.07476 1.25747 1.22678 0.97250 0.81978 1.00085 1.22652 1.00938 0.97911 0.93169 1.21362 0.96075 0.93405 0.96354 1.22738 0.95760 0.97098 1.00162 1.21272 0.86192 0.92262 0.94668 1.44878 1.18809 1.32954 1.38568 1.19361 1.10257 0.99005 1.08505 0.90747 1.25641 0.99386 0.97818 1.02594 1.70133 1.26289 1.18199 1.44869 0.85116 0.77379 0.78468 0.78697 1.21151 1.22102 1.19634 1.21251 0.95057 0.88823 0.92195 1.21567 0.96932 0.93276 0.87114 0.91575 0.89910 0.91462 0.87654 0.89003 0.89444 0.92576 0.90284 0.89852 0.90396 0.87055 0.88977 0.90293 0.89114 0.92269 0.94793 0.97774 0.94295 0.96742 0.95148 0.91425 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 8.50 71.24 0.61 -0.87 16 2 C 0.10 2.57 6.61 43.10 0.28 2.86 16 3 N -0.34 -9.09 12.70 -47.38 -0.60 -9.69 16 4 N -0.47 -8.93 7.36 -48.00 -0.35 -9.28 16 5 H 0.45 5.33 8.96 -213.33 -1.91 3.42 16 6 C 0.10 1.75 7.21 41.41 0.30 2.05 16 7 C -0.09 -0.76 10.08 71.24 0.72 -0.04 16 8 C -0.25 -5.28 4.65 -20.14 -0.09 -5.37 16 9 C -0.01 -0.25 2.16 -12.29 -0.03 -0.28 16 10 H 0.12 1.45 6.19 -2.39 -0.01 1.44 16 11 C -0.14 -1.87 8.95 71.98 0.64 -1.22 16 12 C 0.53 13.19 6.78 87.66 0.59 13.79 16 13 O -0.57 -18.60 12.88 -3.01 -0.04 -18.64 16 14 N -0.62 -14.68 3.34 -812.36 -2.71 -17.40 16 15 C 0.10 1.84 6.26 87.01 0.54 2.39 16 16 C -0.11 -2.58 5.87 31.65 0.19 -2.40 16 17 C -0.07 -2.19 0.61 -51.86 -0.03 -2.23 16 18 C -0.12 -4.15 5.93 31.57 0.19 -3.97 16 19 C 0.18 8.59 5.40 86.93 0.47 9.06 16 20 N -0.63 -31.50 3.41 -693.03 -2.36 -33.86 16 21 C -0.24 -13.48 10.25 84.03 0.86 -12.62 16 22 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.06 -3.43 5.47 84.86 0.46 -2.96 16 24 N -0.95 -55.90 10.49 21.65 0.23 -55.68 16 25 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.15 5.99 6.39 86.15 0.55 6.55 16 30 C 0.13 3.89 6.14 86.14 0.53 4.42 16 31 H 0.07 1.89 7.11 -2.38 -0.02 1.88 16 32 H 0.08 1.83 4.76 -2.39 -0.01 1.82 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.09 0.71 7.11 -2.39 -0.02 0.69 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 0.90 5.32 -2.38 -0.01 0.89 16 38 H 0.08 0.81 6.79 -2.39 -0.02 0.79 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.26 6.40 -2.39 -0.02 1.24 16 42 H 0.09 1.91 7.82 -2.39 -0.02 1.89 16 43 H 0.08 2.10 7.94 -2.39 -0.02 2.08 16 44 H 0.09 2.67 7.78 -2.39 -0.02 2.65 16 45 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 46 H 0.03 1.86 6.78 -2.38 -0.02 1.84 16 47 H 0.00 0.22 8.10 -2.39 -0.02 0.20 16 48 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 49 H 0.01 0.60 7.44 -2.39 -0.02 0.58 16 50 H 0.03 1.17 7.78 -2.39 -0.02 1.15 16 51 H 0.07 1.98 7.86 -2.38 -0.02 1.96 16 52 H 0.05 1.60 7.42 -2.39 -0.02 1.58 16 Total: -1.00 -76.61 394.79 2.00 -74.61 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.97 Total: 13.45 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.79 Total: 9.14 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -5.81 Total: -125.91 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.64 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -76.61 2.00 -74.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041745396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.733 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds