Wall clock time and date at job start Wed Apr 1 2020 04:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34672 * 125.99016 * 2 1 4 4 N 1.36880 * 106.81773 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.39895 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47119 * 67.55652 * 5 4 3 7 7 C 1.53005 * 109.47122 * 307.55562 * 5 4 3 8 8 C 1.50703 * 109.47385 * 187.55597 * 5 4 3 9 9 O 1.21277 * 119.99869 * 245.87657 * 8 5 4 10 10 N 1.34781 * 119.99695 * 65.87717 * 8 5 4 11 11 C 1.44750 * 117.18600 * 354.52701 * 10 8 5 12 12 C 1.52359 * 111.58513 * 214.13009 * 11 10 8 13 13 C 1.49437 * 113.57782 * 316.52150 * 12 11 10 14 14 H 1.09001 * 107.26935 * 166.94965 * 13 12 11 15 15 C 1.54521 * 112.98048 * 285.01226 * 13 12 11 16 16 C 1.55246 * 100.54344 * 166.32657 * 15 13 12 17 17 N 1.47469 * 105.14580 * 323.74934 * 16 15 13 18 18 C 1.36936 * 125.66317 * 200.96386 * 17 16 15 19 19 H 1.08010 * 119.99629 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.00601 * 0.02591 * 18 17 16 21 21 N 1.31621 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00463 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47584 * 119.99570 * 22 20 18 25 25 H 1.48505 * 109.47019 * 239.99949 * 22 20 18 26 26 C 1.48530 * 108.53447 * 20.98183 * 17 16 15 27 27 H 1.09006 * 109.25229 * 121.36723 * 26 17 16 28 28 C 1.43784 * 117.17986 * 174.55375 * 10 8 5 29 29 C 1.35050 * 107.20569 * 0.26488 * 4 3 2 30 30 N 1.30503 * 108.69422 * 359.56001 * 29 4 3 31 31 H 1.08994 * 109.47452 * 89.99695 * 1 2 3 32 32 H 1.08993 * 109.47045 * 210.00207 * 1 2 3 33 33 H 1.09000 * 109.47106 * 329.99871 * 1 2 3 34 34 H 1.07999 * 126.59193 * 359.96229 * 3 2 1 35 35 H 1.08996 * 109.47366 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47118 * 300.00285 * 6 5 4 37 37 H 1.08996 * 109.47144 * 59.99864 * 6 5 4 38 38 H 1.08995 * 109.47200 * 310.84940 * 7 5 4 39 39 H 1.09003 * 109.46673 * 70.84747 * 7 5 4 40 40 H 1.09001 * 109.46759 * 190.83783 * 7 5 4 41 41 H 1.08999 * 109.03506 * 334.32601 * 11 10 8 42 42 H 1.08999 * 109.03151 * 93.25354 * 11 10 8 43 43 H 1.09001 * 108.18267 * 195.93486 * 12 11 10 44 44 H 1.08991 * 109.45873 * 78.02246 * 12 11 10 45 45 H 1.08994 * 111.20230 * 48.49956 * 15 13 12 46 46 H 1.09005 * 111.23523 * 284.16260 * 15 13 12 47 47 H 1.09003 * 110.32962 * 82.69573 * 16 15 13 48 48 H 1.09004 * 110.32558 * 204.79932 * 16 15 13 49 49 H 0.96998 * 120.00167 * 180.02562 * 21 20 18 50 50 H 1.08998 * 108.06518 * 35.55166 * 28 10 8 51 51 H 1.09000 * 108.06096 * 279.05313 * 28 10 8 52 52 H 1.07998 * 125.65030 * 179.71387 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4684 -0.0013 6 6 4.9096 2.2112 1.3317 7 6 4.7226 2.4818 -1.1450 8 6 6.0102 0.5906 -0.1886 9 8 6.8227 0.4795 0.7049 10 7 6.1900 -0.0708 -1.3492 11 6 5.1255 0.0078 -2.3269 12 6 4.9940 -1.2878 -3.1178 13 6 6.3052 -1.8606 -3.5488 14 1 6.1173 -2.8790 -3.8889 15 6 6.9410 -1.0915 -4.7286 16 6 8.3834 -1.6645 -4.6970 17 7 8.6922 -1.8522 -3.2672 18 6 9.9470 -1.9456 -2.7270 19 1 10.0678 -2.0836 -1.6626 20 6 11.0638 -1.8630 -3.5472 21 7 10.9166 -1.6953 -4.8443 22 14 12.7755 -1.9911 -2.8103 23 1 12.6692 -2.1762 -1.3407 24 1 13.4853 -3.1517 -3.4057 25 1 13.5329 -0.7467 -3.0985 26 6 7.4143 -1.9232 -2.5136 27 1 7.3609 -2.8752 -1.9853 28 6 7.4224 -0.7940 -1.5089 29 6 3.5449 -0.7096 -0.0069 30 7 2.2952 -1.0852 -0.0006 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9751 2.1201 -0.0006 35 1 5.8084 2.8278 1.3310 36 1 4.0339 2.8460 1.4672 37 1 4.9645 1.4892 2.1465 38 1 4.4525 1.9684 -2.0678 39 1 3.9685 3.2341 -0.9136 40 1 5.6919 2.9650 -1.2682 41 1 4.1842 0.2024 -1.8128 42 1 5.3323 0.8297 -3.0123 43 1 4.3954 -1.0850 -4.0058 44 1 4.4727 -2.0304 -2.5140 45 1 6.9395 -0.0171 -4.5452 46 1 6.4430 -1.3289 -5.6688 47 1 8.4232 -2.6193 -5.2214 48 1 9.0816 -0.9577 -5.1455 49 1 11.6970 -1.6379 -5.4176 50 1 7.7003 -1.2066 -0.5390 51 1 8.1949 -0.0842 -1.8046 52 1 4.4004 -1.3687 -0.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042114317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:40 Heat of formation + Delta-G solvation = 85.241342 kcal Electronic energy + Delta-G solvation = -33113.772023 eV Core-core repulsion = 29116.340247 eV Total energy + Delta-G solvation = -3997.431776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.83707 -40.54126 -38.59659 -36.18373 -35.49906 -33.24173 -32.06930 -31.64387 -30.67709 -29.54106 -28.68815 -27.69123 -27.07667 -25.20624 -24.50807 -22.93834 -22.77374 -21.80372 -20.40310 -20.30235 -19.30186 -18.34924 -17.51711 -17.04095 -16.52187 -15.78132 -15.59808 -15.11553 -15.00951 -14.77386 -14.66321 -14.20317 -14.07167 -13.94817 -13.76541 -13.41928 -13.33485 -12.82563 -12.78428 -12.64900 -12.56320 -12.53970 -12.38507 -12.29569 -12.13006 -11.79967 -11.66712 -11.49501 -11.30115 -11.10027 -10.85193 -10.78815 -10.12954 -10.10289 -10.06111 -9.94728 -9.85245 -9.70671 -9.63649 -9.54926 -8.70689 -8.46724 -8.37302 -6.95626 -5.72082 -3.13093 1.86150 1.96030 2.88094 2.90778 2.98293 3.37485 3.44141 3.46161 3.91865 4.33474 4.41096 4.43965 4.47349 4.62016 4.82577 4.92996 5.02154 5.04933 5.11578 5.14238 5.23759 5.28334 5.32176 5.36597 5.40235 5.47579 5.55018 5.58026 5.64776 5.70101 5.71839 5.75780 5.83389 5.83613 5.90245 6.04447 6.09653 6.13815 6.18899 6.41448 6.47530 6.55102 6.60642 6.71799 6.85011 6.95002 6.97167 7.32512 7.47179 7.58733 7.79440 7.95342 8.03606 8.25804 9.15157 9.74557 10.38881 11.33001 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.003322 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.418503 B = 8426.607575 C = 9222.308806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.003 4.003 3 C -0.051 4.051 4 N -0.447 5.447 5 C 0.144 3.856 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.498 3.502 9 O -0.518 6.518 10 N -0.574 5.574 11 C 0.090 3.910 12 C -0.110 4.110 13 C -0.093 4.093 14 H 0.066 0.934 15 C -0.140 4.140 16 C 0.157 3.843 17 N -0.597 5.597 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.164 3.836 27 H 0.042 0.958 28 C 0.102 3.898 29 C 0.193 3.807 30 N -0.485 5.485 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.172 0.828 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.097 0.903 49 H 0.252 0.748 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.652 9.145 5.605 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.132 4.132 3 C -0.183 4.183 4 N -0.133 5.133 5 C 0.057 3.943 6 C -0.198 4.198 7 C -0.230 4.230 8 C 0.282 3.718 9 O -0.393 6.393 10 N -0.306 5.306 11 C -0.033 4.033 12 C -0.148 4.148 13 C -0.112 4.112 14 H 0.085 0.915 15 C -0.179 4.179 16 C 0.033 3.967 17 N -0.322 5.322 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.056 3.944 27 H 0.060 0.940 28 C -0.022 4.022 29 C -0.088 4.088 30 N -0.204 5.204 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.115 0.885 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.058 8.290 5.955 21.619 hybrid contribution 1.388 0.682 0.236 1.565 sum -17.670 8.972 6.191 20.762 Atomic orbital electron populations 1.19996 0.87734 1.02456 1.02098 1.20742 0.96475 0.88491 1.07481 1.22328 0.82531 1.00443 1.13034 1.45728 1.05928 1.07412 1.54263 1.21157 0.81824 0.91493 0.99847 1.21975 1.03278 1.00518 0.94027 1.22576 1.04521 0.98417 0.97519 1.20224 0.87232 0.81352 0.83007 1.90749 1.45459 1.62147 1.40964 1.46869 1.19305 1.48646 1.15759 1.21746 0.90472 0.99080 0.91996 1.20771 0.97847 0.96209 1.00007 1.20629 0.93295 1.00422 0.96856 0.91519 1.23034 0.99664 0.99152 0.96013 1.21853 0.90653 0.98850 0.85358 1.45063 0.99388 1.85207 1.02523 1.19102 0.81173 1.42522 0.92492 0.90335 1.24776 0.97917 1.02095 0.95553 1.69870 1.27957 1.56472 1.02530 0.86028 0.84197 0.77270 0.78219 1.20394 1.21719 1.21738 1.20309 0.87715 0.94738 0.91596 0.94014 1.21548 0.83226 0.96204 1.01236 1.24975 0.97172 0.81861 1.04834 1.70247 1.00070 1.30238 1.19810 0.91490 0.91297 0.91561 0.81034 0.89809 0.91205 0.90861 0.89497 0.90553 0.89734 0.89270 0.91788 0.90683 0.91628 0.92451 0.92190 0.96611 0.88515 0.93776 0.91211 0.90606 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.42 36.01 0.38 -0.14 16 2 C 0.00 -0.03 7.09 -82.85 -0.59 -0.62 16 3 C -0.05 -0.49 10.73 -16.56 -0.18 -0.67 16 4 N -0.45 -4.87 1.46 -105.82 -0.15 -5.03 16 5 C 0.14 1.56 0.79 -132.97 -0.10 1.45 16 6 C -0.14 -1.37 7.92 37.16 0.29 -1.08 16 7 C -0.17 -1.47 7.71 37.16 0.29 -1.18 16 8 C 0.50 7.31 5.26 -10.98 -0.06 7.25 16 9 O -0.52 -9.43 15.28 5.56 0.08 -9.35 16 10 N -0.57 -8.56 2.76 -178.70 -0.49 -9.05 16 11 C 0.09 1.11 3.59 -5.31 -0.02 1.10 16 12 C -0.11 -1.42 5.51 -28.82 -0.16 -1.57 16 13 C -0.09 -1.51 2.43 -92.17 -0.22 -1.74 16 14 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 15 C -0.14 -2.47 6.53 -24.74 -0.16 -2.63 16 16 C 0.16 3.66 5.76 -2.32 -0.01 3.64 16 17 N -0.60 -14.48 2.93 -163.67 -0.48 -14.96 16 18 C -0.22 -6.07 9.63 -15.06 -0.15 -6.21 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.27 10.15 55.49 0.56 -25.71 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.16 3.23 3.46 -68.34 -0.24 2.99 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 C 0.10 1.90 5.41 -6.42 -0.03 1.87 16 29 C 0.19 2.50 9.34 -90.37 -0.84 1.66 16 30 N -0.49 -6.63 11.25 -10.87 -0.12 -6.75 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 38 H 0.09 0.75 4.50 -51.93 -0.23 0.52 16 39 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.09 1.01 3.03 -51.93 -0.16 0.86 16 42 H 0.06 0.76 6.85 -51.93 -0.36 0.40 16 43 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 2.55 6.09 -51.93 -0.32 2.24 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.07 1.40 7.17 -51.93 -0.37 1.02 16 51 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 52 H 0.20 2.69 7.09 -52.49 -0.37 2.32 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -31.38 389.83 -10.14 -41.51 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.48 Total: 2.67 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.90 Total: 3.81 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.69 Total: -61.50 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.38 -10.14 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.756 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds