Wall clock time and date at job start Wed Apr 1 2020 04:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34672 * 125.99016 * 2 1 4 4 N 1.36880 * 106.81773 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.39895 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47119 * 67.55652 * 5 4 3 7 7 C 1.53005 * 109.47122 * 307.55562 * 5 4 3 8 8 C 1.50703 * 109.47385 * 187.55597 * 5 4 3 9 9 O 1.21277 * 119.99869 * 245.87657 * 8 5 4 10 10 N 1.34781 * 119.99695 * 65.87717 * 8 5 4 11 11 C 1.44750 * 117.18600 * 354.52701 * 10 8 5 12 12 C 1.52359 * 111.58513 * 214.13009 * 11 10 8 13 13 C 1.49437 * 113.57782 * 316.52150 * 12 11 10 14 14 H 1.09001 * 107.26935 * 166.94965 * 13 12 11 15 15 C 1.54521 * 112.98048 * 285.01226 * 13 12 11 16 16 C 1.55246 * 100.54344 * 166.32657 * 15 13 12 17 17 N 1.47469 * 105.14580 * 323.74934 * 16 15 13 18 18 C 1.36936 * 125.66317 * 200.96386 * 17 16 15 19 19 H 1.08010 * 119.99629 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.00601 * 0.02591 * 18 17 16 21 21 N 1.31621 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00463 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47584 * 119.99570 * 22 20 18 25 25 H 1.48505 * 109.47019 * 239.99949 * 22 20 18 26 26 C 1.48530 * 108.53447 * 20.98183 * 17 16 15 27 27 H 1.09006 * 109.25229 * 121.36723 * 26 17 16 28 28 C 1.43784 * 117.17986 * 174.55375 * 10 8 5 29 29 C 1.35050 * 107.20569 * 0.26488 * 4 3 2 30 30 N 1.30503 * 108.69422 * 359.56001 * 29 4 3 31 31 H 1.08994 * 109.47452 * 89.99695 * 1 2 3 32 32 H 1.08993 * 109.47045 * 210.00207 * 1 2 3 33 33 H 1.09000 * 109.47106 * 329.99871 * 1 2 3 34 34 H 1.07999 * 126.59193 * 359.96229 * 3 2 1 35 35 H 1.08996 * 109.47366 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47118 * 300.00285 * 6 5 4 37 37 H 1.08996 * 109.47144 * 59.99864 * 6 5 4 38 38 H 1.08995 * 109.47200 * 310.84940 * 7 5 4 39 39 H 1.09003 * 109.46673 * 70.84747 * 7 5 4 40 40 H 1.09001 * 109.46759 * 190.83783 * 7 5 4 41 41 H 1.08999 * 109.03506 * 334.32601 * 11 10 8 42 42 H 1.08999 * 109.03151 * 93.25354 * 11 10 8 43 43 H 1.09001 * 108.18267 * 195.93486 * 12 11 10 44 44 H 1.08991 * 109.45873 * 78.02246 * 12 11 10 45 45 H 1.08994 * 111.20230 * 48.49956 * 15 13 12 46 46 H 1.09005 * 111.23523 * 284.16260 * 15 13 12 47 47 H 1.09003 * 110.32962 * 82.69573 * 16 15 13 48 48 H 1.09004 * 110.32558 * 204.79932 * 16 15 13 49 49 H 0.96998 * 120.00167 * 180.02562 * 21 20 18 50 50 H 1.08998 * 108.06518 * 35.55166 * 28 10 8 51 51 H 1.09000 * 108.06096 * 279.05313 * 28 10 8 52 52 H 1.07998 * 125.65030 * 179.71387 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4684 -0.0013 6 6 4.9096 2.2112 1.3317 7 6 4.7226 2.4818 -1.1450 8 6 6.0102 0.5906 -0.1886 9 8 6.8227 0.4795 0.7049 10 7 6.1900 -0.0708 -1.3492 11 6 5.1255 0.0078 -2.3269 12 6 4.9940 -1.2878 -3.1178 13 6 6.3052 -1.8606 -3.5488 14 1 6.1173 -2.8790 -3.8889 15 6 6.9410 -1.0915 -4.7286 16 6 8.3834 -1.6645 -4.6970 17 7 8.6922 -1.8522 -3.2672 18 6 9.9470 -1.9456 -2.7270 19 1 10.0678 -2.0836 -1.6626 20 6 11.0638 -1.8630 -3.5472 21 7 10.9166 -1.6953 -4.8443 22 14 12.7755 -1.9911 -2.8103 23 1 12.6692 -2.1762 -1.3407 24 1 13.4853 -3.1517 -3.4057 25 1 13.5329 -0.7467 -3.0985 26 6 7.4143 -1.9232 -2.5136 27 1 7.3609 -2.8752 -1.9853 28 6 7.4224 -0.7940 -1.5089 29 6 3.5449 -0.7096 -0.0069 30 7 2.2952 -1.0852 -0.0006 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9751 2.1201 -0.0006 35 1 5.8084 2.8278 1.3310 36 1 4.0339 2.8460 1.4672 37 1 4.9645 1.4892 2.1465 38 1 4.4525 1.9684 -2.0678 39 1 3.9685 3.2341 -0.9136 40 1 5.6919 2.9650 -1.2682 41 1 4.1842 0.2024 -1.8128 42 1 5.3323 0.8297 -3.0123 43 1 4.3954 -1.0850 -4.0058 44 1 4.4727 -2.0304 -2.5140 45 1 6.9395 -0.0171 -4.5452 46 1 6.4430 -1.3289 -5.6688 47 1 8.4232 -2.6193 -5.2214 48 1 9.0816 -0.9577 -5.1455 49 1 11.6970 -1.6379 -5.4176 50 1 7.7003 -1.2066 -0.5390 51 1 8.1949 -0.0842 -1.8046 52 1 4.4004 -1.3687 -0.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042114317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:39 Heat of formation + Delta-G solvation = 67.848054 kcal Electronic energy + Delta-G solvation = -33114.526253 eV Core-core repulsion = 29116.340247 eV Total energy + Delta-G solvation = -3998.186006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.74033 -41.72972 -40.03238 -37.30632 -36.80150 -34.90984 -33.31084 -32.79002 -31.59625 -31.02406 -30.31674 -28.46680 -27.88852 -26.67853 -26.10607 -24.19591 -23.90011 -22.87686 -22.18702 -21.09554 -20.43619 -19.43467 -18.96121 -18.73829 -17.67008 -17.04120 -16.69247 -16.66224 -16.53021 -16.06057 -15.71392 -15.66711 -15.28141 -14.91674 -14.85483 -14.38117 -14.33743 -14.24039 -13.87765 -13.72607 -13.50729 -13.47303 -13.33432 -13.28778 -13.22979 -13.12606 -12.95529 -12.80561 -12.70250 -12.67307 -12.56303 -12.15935 -12.00789 -11.68725 -11.52642 -11.33409 -11.19882 -11.09725 -10.89904 -10.77717 -10.56513 -9.72013 -9.22342 -8.97895 -7.83073 -5.25533 0.90615 1.05491 1.41806 1.42446 1.52613 1.71690 1.90711 2.13084 2.43802 2.90612 3.27182 3.47516 3.54899 3.58121 3.64667 3.68727 3.73600 3.82552 3.92318 4.09860 4.13794 4.28263 4.31862 4.36841 4.46459 4.50970 4.53267 4.62117 4.64235 4.66575 4.68459 4.82406 4.85779 4.91321 4.96286 5.00940 5.01861 5.07154 5.09480 5.10653 5.22399 5.28372 5.30656 5.41879 5.42158 5.53532 5.66046 5.78906 5.88879 6.08298 6.13445 6.24543 6.82789 7.06869 7.11534 7.71303 8.35257 9.19812 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.003322 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.418503 B = 8426.607575 C = 9222.308806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.026 4.026 3 C -0.030 4.030 4 N -0.443 5.443 5 C 0.155 3.845 6 C -0.138 4.138 7 C -0.171 4.171 8 C 0.494 3.506 9 O -0.562 6.562 10 N -0.574 5.574 11 C 0.090 3.910 12 C -0.105 4.105 13 C -0.080 4.080 14 H 0.067 0.933 15 C -0.120 4.120 16 C 0.158 3.842 17 N -0.616 5.616 18 C -0.233 4.233 19 H 0.072 0.928 20 C -0.061 4.061 21 N -0.944 5.944 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.161 3.839 27 H 0.029 0.971 28 C 0.128 3.872 29 C 0.170 3.830 30 N -0.511 5.511 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.214 0.786 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.090 0.910 47 H -0.012 1.012 48 H 0.062 0.938 49 H 0.247 0.753 50 H 0.046 0.954 51 H 0.040 0.960 52 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 11.606 5.559 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.154 4.154 3 C -0.162 4.162 4 N -0.129 5.129 5 C 0.067 3.933 6 C -0.196 4.196 7 C -0.228 4.228 8 C 0.280 3.720 9 O -0.440 6.440 10 N -0.305 5.305 11 C -0.032 4.032 12 C -0.143 4.143 13 C -0.100 4.100 14 H 0.085 0.915 15 C -0.159 4.159 16 C 0.033 3.967 17 N -0.341 5.341 18 C -0.362 4.362 19 H 0.090 0.910 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.055 3.945 27 H 0.047 0.953 28 C 0.003 3.997 29 C -0.111 4.111 30 N -0.231 5.231 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.231 0.769 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.006 0.994 48 H 0.080 0.920 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.058 0.942 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.583 10.753 5.914 25.702 hybrid contribution 2.430 -0.119 0.323 2.454 sum -20.153 10.635 6.237 23.625 Atomic orbital electron populations 1.20073 0.85834 1.03176 1.02903 1.21312 0.97835 0.88267 1.08030 1.22939 0.81065 1.01872 1.10303 1.45733 1.06545 1.06692 1.53951 1.21120 0.79732 0.90701 1.01699 1.22006 1.04893 1.00193 0.92485 1.22634 1.05624 0.98303 0.96238 1.21030 0.88160 0.80892 0.81934 1.90727 1.47467 1.63508 1.42275 1.46829 1.18567 1.48188 1.16882 1.21990 0.90104 0.99381 0.91711 1.20761 0.95690 0.96334 1.01473 1.20574 0.93647 1.00796 0.94952 0.91483 1.22877 0.95753 0.99246 0.97984 1.21659 0.93746 0.96861 0.84390 1.45295 1.00095 1.85099 1.03611 1.19318 0.82857 1.41689 0.92371 0.91001 1.25510 1.01122 1.02661 0.96059 1.70093 1.28297 1.57580 1.03377 0.85105 0.80173 0.76920 0.77738 1.19751 1.21709 1.21661 1.20454 0.87353 0.94338 0.92399 0.95290 1.20853 0.84488 0.95029 0.99359 1.24642 0.96709 0.82705 1.07057 1.70213 1.00631 1.31994 1.20245 0.90590 0.92444 0.89020 0.76913 0.90003 0.87647 0.93186 0.89274 0.86875 0.90139 0.87484 0.90197 0.87441 0.91317 0.91760 0.89118 0.99377 0.91973 0.94319 0.93587 0.94158 0.80290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.42 71.24 0.74 -0.04 16 2 C -0.03 -0.50 7.09 41.39 0.29 -0.20 16 3 C -0.03 -0.44 10.73 83.09 0.89 0.46 16 4 N -0.44 -8.37 1.46 -488.70 -0.71 -9.08 16 5 C 0.15 2.95 0.79 2.86 0.00 2.95 16 6 C -0.14 -2.36 7.92 71.98 0.57 -1.79 16 7 C -0.17 -2.16 7.71 71.98 0.56 -1.60 16 8 C 0.49 14.44 5.26 87.66 0.46 14.90 16 9 O -0.56 -21.29 15.28 -3.02 -0.05 -21.34 16 10 N -0.57 -17.01 2.76 -837.68 -2.31 -19.32 16 11 C 0.09 2.00 3.59 86.49 0.31 2.31 16 12 C -0.10 -2.41 5.51 29.24 0.16 -2.24 16 13 C -0.08 -2.54 2.43 -11.80 -0.03 -2.57 16 14 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 15 C -0.12 -4.08 6.53 31.88 0.21 -3.88 16 16 C 0.16 7.60 5.76 86.97 0.50 8.10 16 17 N -0.62 -31.27 2.93 -671.72 -1.97 -33.24 16 18 C -0.23 -13.21 9.63 84.03 0.81 -12.40 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 21 N -0.94 -56.14 10.15 21.65 0.22 -55.92 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.16 6.56 3.46 43.61 0.15 6.71 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 C 0.13 5.03 5.41 86.28 0.47 5.49 16 29 C 0.17 4.21 9.34 180.26 1.68 5.90 16 30 N -0.51 -13.18 11.25 -188.31 -2.12 -15.30 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.05 8.10 -2.38 -0.02 1.04 16 37 H 0.05 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.09 1.12 4.50 -2.39 -0.01 1.11 16 39 H 0.11 0.66 8.10 -2.39 -0.02 0.65 16 40 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 41 H 0.11 2.08 3.03 -2.39 -0.01 2.08 16 42 H 0.08 1.59 6.85 -2.39 -0.02 1.57 16 43 H 0.11 1.90 8.09 -2.39 -0.02 1.88 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 46 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.06 3.43 6.09 -2.38 -0.01 3.41 16 49 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 50 H 0.05 1.99 7.17 -2.39 -0.02 1.97 16 51 H 0.04 1.86 7.50 -2.39 -0.02 1.85 16 52 H 0.18 5.01 7.09 -2.91 -0.02 4.99 16 Total: -1.00 -74.70 389.83 4.24 -70.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.91 Total: 15.84 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 8.24 Total: 19.09 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -6.90 Total: -132.86 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.70 4.24 -70.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.317 kcal (2) G-P(sol) polarization free energy of solvation -74.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds