Wall clock time and date at job start Wed Apr 1 2020 04:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34667 * 125.98937 * 2 1 4 4 N 1.36883 * 106.81584 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.39598 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47060 * 292.82065 * 5 4 3 7 7 C 1.53003 * 109.47481 * 52.82028 * 5 4 3 8 8 C 1.50700 * 109.47006 * 172.82168 * 5 4 3 9 9 O 1.21281 * 119.99970 * 115.99231 * 8 5 4 10 10 N 1.34771 * 120.00219 * 295.98823 * 8 5 4 11 11 C 1.46599 * 119.75128 * 5.46012 * 10 8 5 12 12 C 1.52822 * 110.58814 * 132.49448 * 11 10 8 13 13 C 1.51976 * 107.97043 * 51.58491 * 12 11 10 14 14 H 1.09001 * 111.01697 * 56.94702 * 13 12 11 15 15 C 1.53702 * 115.61227 * 184.68175 * 13 12 11 16 16 C 1.55302 * 101.81496 * 153.71573 * 15 13 12 17 17 N 1.48152 * 107.04172 * 337.55604 * 16 15 13 18 18 C 1.36937 * 126.39584 * 174.99972 * 17 16 15 19 19 H 1.08004 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00353 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99628 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47126 * 120.00435 * 22 20 18 25 25 H 1.48507 * 109.47296 * 240.00028 * 22 20 18 26 26 C 1.45499 * 107.20644 * 354.99551 * 17 16 15 27 27 H 1.08992 * 108.99261 * 273.63758 * 26 17 16 28 28 C 1.47796 * 119.75523 * 185.72330 * 10 8 5 29 29 C 1.35043 * 107.20508 * 0.25722 * 4 3 2 30 30 N 1.30499 * 108.69811 * 359.56919 * 29 4 3 31 31 H 1.09006 * 109.46840 * 89.99659 * 1 2 3 32 32 H 1.08999 * 109.47216 * 209.99800 * 1 2 3 33 33 H 1.08998 * 109.46890 * 330.00500 * 1 2 3 34 34 H 1.08004 * 126.59276 * 0.03571 * 3 2 1 35 35 H 1.08994 * 109.47354 * 187.21727 * 6 5 4 36 36 H 1.08995 * 109.47149 * 67.21710 * 6 5 4 37 37 H 1.09001 * 109.46906 * 307.21608 * 6 5 4 38 38 H 1.09002 * 109.47016 * 294.43196 * 7 5 4 39 39 H 1.09005 * 109.46844 * 54.43100 * 7 5 4 40 40 H 1.08993 * 109.47043 * 174.43131 * 7 5 4 41 41 H 1.09000 * 109.22415 * 252.56672 * 11 10 8 42 42 H 1.08993 * 109.22975 * 11.93223 * 11 10 8 43 43 H 1.09001 * 109.20214 * 292.13576 * 12 11 10 44 44 H 1.09000 * 109.97344 * 171.48517 * 12 11 10 45 45 H 1.08998 * 110.95884 * 271.84570 * 15 13 12 46 46 H 1.09004 * 110.95654 * 35.54968 * 15 13 12 47 47 H 1.09004 * 109.91540 * 96.90342 * 16 15 13 48 48 H 1.08999 * 109.91758 * 218.00719 * 16 15 13 49 49 H 0.97000 * 120.00490 * 179.97438 * 21 20 18 50 50 H 1.08996 * 110.06409 * 350.47567 * 28 10 8 51 51 H 1.09002 * 110.06243 * 112.04263 * 28 10 8 52 52 H 1.08000 * 125.64773 * 179.71484 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4684 -0.0003 6 6 4.9037 2.2191 -1.3294 7 6 4.7277 2.4750 1.1497 8 6 6.0110 0.5895 0.1764 9 8 6.8369 0.5102 -0.7083 10 7 6.1768 -0.1082 1.3175 11 6 5.1196 -0.1035 2.3331 12 6 4.8282 -1.5252 2.8121 13 6 6.1475 -2.1647 3.2124 14 1 6.6528 -1.5732 3.9760 15 6 6.0719 -3.6450 3.6190 16 6 7.5067 -4.1391 3.2889 17 7 8.0671 -3.2054 2.2844 18 6 9.3433 -3.2160 1.7882 19 1 9.6435 -2.4828 1.0542 20 6 10.2515 -4.1690 2.2286 21 7 9.8856 -5.0629 3.1227 22 14 11.9926 -4.1829 1.5522 23 1 12.1501 -3.0823 0.5678 24 1 12.9574 -3.9930 2.6650 25 1 12.2548 -5.4843 0.8865 26 6 7.0081 -2.2752 1.9235 27 1 6.4109 -2.7110 1.1226 28 6 7.4253 -0.8676 1.5381 29 6 3.5449 -0.7096 -0.0067 30 7 2.2952 -1.0852 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.9751 2.1201 0.0005 35 1 5.8630 2.7338 -1.3819 36 1 4.0961 2.9478 -1.3993 37 1 4.8260 1.5105 -2.1540 38 1 3.9101 3.1733 0.9708 39 1 4.5544 1.9449 2.0863 40 1 5.6674 3.0239 1.2114 41 1 5.4403 0.5001 3.1822 42 1 4.2145 0.3294 1.9072 43 1 4.3734 -2.0912 1.9991 44 1 4.1539 -1.4988 3.6681 45 1 5.8597 -3.7467 4.6833 46 1 5.3294 -4.1756 3.0229 47 1 8.1200 -4.1271 4.1900 48 1 7.4670 -5.1488 2.8804 49 1 10.5200 -5.7291 3.4303 50 1 8.0160 -0.8902 0.6224 51 1 8.0012 -0.4142 2.3449 52 1 4.4004 -1.3687 -0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042114319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:47 Heat of formation + Delta-G solvation = 78.846015 kcal Electronic energy + Delta-G solvation = -33118.070041 eV Core-core repulsion = 29120.360943 eV Total energy + Delta-G solvation = -3997.709098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.75333 -40.40390 -38.60420 -36.15106 -35.52321 -32.96736 -32.04293 -31.39952 -30.64927 -29.61189 -28.70356 -27.73154 -27.00813 -25.00684 -24.39407 -22.86826 -22.34892 -21.66497 -20.28230 -20.11998 -19.56751 -19.09050 -17.89208 -16.70110 -16.48664 -15.74734 -15.53238 -15.05889 -14.87063 -14.70023 -14.36118 -14.12157 -14.04409 -13.85773 -13.71648 -13.31535 -13.28420 -13.09898 -12.80891 -12.73390 -12.58453 -12.55875 -12.40853 -12.26803 -12.10062 -11.91692 -11.75350 -11.56907 -11.22788 -10.97335 -10.81675 -10.77425 -10.16050 -10.06720 -9.99466 -9.92381 -9.91526 -9.69863 -9.61513 -9.51187 -8.66779 -8.62016 -8.42936 -6.88169 -5.74002 -3.08132 1.88040 1.95629 2.74678 2.86347 3.02854 3.39469 3.46181 3.48012 3.85492 4.28139 4.38173 4.48276 4.49908 4.64734 4.79284 4.91931 5.02357 5.03712 5.07719 5.16239 5.21548 5.29060 5.32350 5.35396 5.41995 5.56806 5.57154 5.57938 5.64463 5.72107 5.75986 5.79962 5.81163 5.86431 5.95292 6.02837 6.05437 6.11492 6.17648 6.27719 6.39662 6.52227 6.61149 6.63857 6.70211 6.98426 7.00660 7.27839 7.53815 7.58933 7.79612 7.93660 7.99919 8.20719 9.16498 9.79473 10.45947 11.38181 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003463 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.068739 B = 8084.137002 C = 9059.819821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 C -0.054 4.054 4 N -0.450 5.450 5 C 0.144 3.856 6 C -0.141 4.141 7 C -0.169 4.169 8 C 0.510 3.490 9 O -0.518 6.518 10 N -0.595 5.595 11 C 0.092 3.908 12 C -0.120 4.120 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.137 4.137 16 C 0.178 3.822 17 N -0.592 5.592 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.157 3.843 27 H 0.024 0.976 28 C 0.114 3.886 29 C 0.196 3.804 30 N -0.484 5.484 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.252 0.748 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 16.528 -1.526 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.186 4.186 4 N -0.136 5.136 5 C 0.056 3.944 6 C -0.199 4.199 7 C -0.227 4.227 8 C 0.294 3.706 9 O -0.392 6.392 10 N -0.328 5.328 11 C -0.031 4.031 12 C -0.158 4.158 13 C -0.130 4.130 14 H 0.094 0.906 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.317 5.317 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.048 3.952 27 H 0.041 0.959 28 C -0.008 4.008 29 C -0.086 4.086 30 N -0.202 5.202 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.189 0.811 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.113 0.887 51 H 0.093 0.907 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.598 15.607 -1.964 22.868 hybrid contribution 1.371 0.729 -0.228 1.569 sum -15.227 16.336 -2.192 22.439 Atomic orbital electron populations 1.19999 0.87773 1.02506 1.02017 1.20746 0.96464 0.88517 1.07340 1.22295 0.82553 1.00363 1.13403 1.45709 1.05819 1.07402 1.54651 1.21139 0.81943 0.91458 0.99818 1.21988 1.03618 1.00273 0.94004 1.22508 1.04368 0.98526 0.97280 1.20104 0.87223 0.80724 0.82572 1.90764 1.44707 1.63411 1.40360 1.48365 1.19075 1.47842 1.17546 1.22077 0.90593 0.98937 0.91506 1.21622 0.98135 0.94634 1.01424 1.22238 0.95087 0.96854 0.98859 0.90605 1.22715 1.00209 0.94699 0.99902 1.21540 0.87654 0.92435 0.93022 1.44174 1.08072 1.31573 1.47845 1.19069 0.85400 1.12452 1.18838 0.90270 1.24785 0.98393 0.97839 0.99163 1.69951 1.34000 1.19292 1.33437 0.86078 0.84418 0.77447 0.78062 1.20407 1.21773 1.21710 1.20976 0.90804 0.89157 0.94260 0.95876 1.21863 0.83855 0.92104 1.02942 1.25083 0.97252 0.81779 1.04509 1.70266 1.00062 1.30137 1.19738 0.91629 0.91195 0.91554 0.81116 0.89678 0.91171 0.90963 0.90466 0.89808 0.89796 0.91581 0.89155 0.90930 0.90783 0.92198 0.92381 0.92642 0.94345 0.93772 0.88734 0.90732 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.42 36.01 0.38 -0.17 16 2 C 0.00 -0.02 7.09 -82.85 -0.59 -0.61 16 3 C -0.05 -0.52 10.68 -16.56 -0.18 -0.70 16 4 N -0.45 -4.94 1.45 -105.82 -0.15 -5.10 16 5 C 0.14 1.50 0.79 -132.97 -0.10 1.40 16 6 C -0.14 -1.34 7.98 37.16 0.30 -1.04 16 7 C -0.17 -1.28 7.89 37.16 0.29 -0.99 16 8 C 0.51 7.26 5.40 -10.99 -0.06 7.20 16 9 O -0.52 -9.25 15.29 5.56 0.08 -9.17 16 10 N -0.60 -8.45 2.57 -173.39 -0.45 -8.90 16 11 C 0.09 1.08 3.47 -4.08 -0.01 1.06 16 12 C -0.12 -1.58 5.53 -27.34 -0.15 -1.73 16 13 C -0.11 -1.83 2.61 -89.51 -0.23 -2.07 16 14 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 15 C -0.14 -2.48 6.57 -25.15 -0.17 -2.65 16 16 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 17 N -0.59 -14.62 3.35 -162.90 -0.55 -15.16 16 18 C -0.23 -6.26 9.88 -15.06 -0.15 -6.41 16 19 H 0.08 2.12 7.41 -52.48 -0.39 1.73 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.71 10.43 55.49 0.58 -26.13 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.16 3.12 2.75 -67.82 -0.19 2.93 16 27 H 0.02 0.51 7.96 -51.93 -0.41 0.09 16 28 C 0.11 2.04 5.70 -3.95 -0.02 2.02 16 29 C 0.20 2.65 8.42 -90.38 -0.76 1.89 16 30 N -0.48 -6.89 11.25 -10.88 -0.12 -7.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 39 H 0.08 0.65 4.77 -51.93 -0.25 0.41 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 42 H 0.09 0.98 3.16 -51.93 -0.16 0.81 16 43 H 0.07 1.04 6.37 -51.93 -0.33 0.71 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 47 H 0.06 1.45 7.21 -51.93 -0.37 1.08 16 48 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.09 1.91 6.74 -51.93 -0.35 1.56 16 51 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.20 2.98 6.41 -52.49 -0.34 2.64 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -32.03 388.79 -9.97 -42.00 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.45 Total: 2.39 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.75 Total: 4.10 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.69 Total: -62.31 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.03 -9.97 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.850 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds