Wall clock time and date at job start Wed Apr 1 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34667 * 125.98937 * 2 1 4 4 N 1.36883 * 106.81584 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.39598 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47060 * 292.82065 * 5 4 3 7 7 C 1.53003 * 109.47481 * 52.82028 * 5 4 3 8 8 C 1.50700 * 109.47006 * 172.82168 * 5 4 3 9 9 O 1.21281 * 119.99970 * 115.99231 * 8 5 4 10 10 N 1.34771 * 120.00219 * 295.98823 * 8 5 4 11 11 C 1.46599 * 119.75128 * 5.46012 * 10 8 5 12 12 C 1.52822 * 110.58814 * 132.49448 * 11 10 8 13 13 C 1.51976 * 107.97043 * 51.58491 * 12 11 10 14 14 H 1.09001 * 111.01697 * 56.94702 * 13 12 11 15 15 C 1.53702 * 115.61227 * 184.68175 * 13 12 11 16 16 C 1.55302 * 101.81496 * 153.71573 * 15 13 12 17 17 N 1.48152 * 107.04172 * 337.55604 * 16 15 13 18 18 C 1.36937 * 126.39584 * 174.99972 * 17 16 15 19 19 H 1.08004 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00353 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99628 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47126 * 120.00435 * 22 20 18 25 25 H 1.48507 * 109.47296 * 240.00028 * 22 20 18 26 26 C 1.45499 * 107.20644 * 354.99551 * 17 16 15 27 27 H 1.08992 * 108.99261 * 273.63758 * 26 17 16 28 28 C 1.47796 * 119.75523 * 185.72330 * 10 8 5 29 29 C 1.35043 * 107.20508 * 0.25722 * 4 3 2 30 30 N 1.30499 * 108.69811 * 359.56919 * 29 4 3 31 31 H 1.09006 * 109.46840 * 89.99659 * 1 2 3 32 32 H 1.08999 * 109.47216 * 209.99800 * 1 2 3 33 33 H 1.08998 * 109.46890 * 330.00500 * 1 2 3 34 34 H 1.08004 * 126.59276 * 0.03571 * 3 2 1 35 35 H 1.08994 * 109.47354 * 187.21727 * 6 5 4 36 36 H 1.08995 * 109.47149 * 67.21710 * 6 5 4 37 37 H 1.09001 * 109.46906 * 307.21608 * 6 5 4 38 38 H 1.09002 * 109.47016 * 294.43196 * 7 5 4 39 39 H 1.09005 * 109.46844 * 54.43100 * 7 5 4 40 40 H 1.08993 * 109.47043 * 174.43131 * 7 5 4 41 41 H 1.09000 * 109.22415 * 252.56672 * 11 10 8 42 42 H 1.08993 * 109.22975 * 11.93223 * 11 10 8 43 43 H 1.09001 * 109.20214 * 292.13576 * 12 11 10 44 44 H 1.09000 * 109.97344 * 171.48517 * 12 11 10 45 45 H 1.08998 * 110.95884 * 271.84570 * 15 13 12 46 46 H 1.09004 * 110.95654 * 35.54968 * 15 13 12 47 47 H 1.09004 * 109.91540 * 96.90342 * 16 15 13 48 48 H 1.08999 * 109.91758 * 218.00719 * 16 15 13 49 49 H 0.97000 * 120.00490 * 179.97438 * 21 20 18 50 50 H 1.08996 * 110.06409 * 350.47567 * 28 10 8 51 51 H 1.09002 * 110.06243 * 112.04263 * 28 10 8 52 52 H 1.08000 * 125.64773 * 179.71484 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4684 -0.0003 6 6 4.9037 2.2191 -1.3294 7 6 4.7277 2.4750 1.1497 8 6 6.0110 0.5895 0.1764 9 8 6.8369 0.5102 -0.7083 10 7 6.1768 -0.1082 1.3175 11 6 5.1196 -0.1035 2.3331 12 6 4.8282 -1.5252 2.8121 13 6 6.1475 -2.1647 3.2124 14 1 6.6528 -1.5732 3.9760 15 6 6.0719 -3.6450 3.6190 16 6 7.5067 -4.1391 3.2889 17 7 8.0671 -3.2054 2.2844 18 6 9.3433 -3.2160 1.7882 19 1 9.6435 -2.4828 1.0542 20 6 10.2515 -4.1690 2.2286 21 7 9.8856 -5.0629 3.1227 22 14 11.9926 -4.1829 1.5522 23 1 12.1501 -3.0823 0.5678 24 1 12.9574 -3.9930 2.6650 25 1 12.2548 -5.4843 0.8865 26 6 7.0081 -2.2752 1.9235 27 1 6.4109 -2.7110 1.1226 28 6 7.4253 -0.8676 1.5381 29 6 3.5449 -0.7096 -0.0067 30 7 2.2952 -1.0852 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.9751 2.1201 0.0005 35 1 5.8630 2.7338 -1.3819 36 1 4.0961 2.9478 -1.3993 37 1 4.8260 1.5105 -2.1540 38 1 3.9101 3.1733 0.9708 39 1 4.5544 1.9449 2.0863 40 1 5.6674 3.0239 1.2114 41 1 5.4403 0.5001 3.1822 42 1 4.2145 0.3294 1.9072 43 1 4.3734 -2.0912 1.9991 44 1 4.1539 -1.4988 3.6681 45 1 5.8597 -3.7467 4.6833 46 1 5.3294 -4.1756 3.0229 47 1 8.1200 -4.1271 4.1900 48 1 7.4670 -5.1488 2.8804 49 1 10.5200 -5.7291 3.4303 50 1 8.0160 -0.8902 0.6224 51 1 8.0012 -0.4142 2.3449 52 1 4.4004 -1.3687 -0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042114319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:46 Heat of formation + Delta-G solvation = 60.223030 kcal Electronic energy + Delta-G solvation = -33118.877594 eV Core-core repulsion = 29120.360943 eV Total energy + Delta-G solvation = -3998.516651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.65681 -41.58014 -40.03276 -37.25989 -36.82163 -34.71963 -33.01821 -32.77400 -31.59594 -31.04948 -30.32892 -28.44105 -27.82124 -26.63175 -25.94199 -23.86687 -23.67189 -22.77341 -21.86093 -21.15586 -20.98732 -20.12701 -18.96491 -18.56809 -17.59260 -16.98566 -16.69633 -16.48633 -16.26086 -15.83895 -15.67708 -15.55597 -15.21906 -14.99239 -14.81978 -14.50645 -14.28535 -14.14830 -13.97633 -13.81030 -13.62103 -13.40158 -13.33854 -13.26273 -13.22827 -13.09858 -13.03436 -12.80897 -12.78278 -12.63144 -12.31754 -12.14769 -12.00149 -11.80468 -11.58224 -11.42495 -11.10874 -11.08390 -10.87824 -10.76524 -10.55370 -9.88103 -9.23016 -8.94550 -7.88939 -5.24342 0.92098 1.05880 1.41868 1.42855 1.52894 1.60321 1.91137 2.14168 2.46256 2.88727 3.29397 3.41067 3.53814 3.59045 3.65217 3.74223 3.83063 3.85767 3.88780 4.18162 4.19903 4.23323 4.34901 4.41999 4.46121 4.53301 4.54440 4.59496 4.63360 4.65817 4.67983 4.73861 4.77941 4.83198 4.99488 5.01636 5.03125 5.07229 5.07912 5.10364 5.15387 5.22386 5.25950 5.30811 5.44087 5.51923 5.62268 5.74766 5.89585 6.09409 6.13909 6.15721 6.79295 7.04686 7.13245 7.72762 8.40111 9.22193 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003463 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.068739 B = 8084.137002 C = 9059.819821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.027 4.027 3 C -0.029 4.029 4 N -0.444 5.444 5 C 0.152 3.848 6 C -0.138 4.138 7 C -0.167 4.167 8 C 0.504 3.496 9 O -0.564 6.564 10 N -0.592 5.592 11 C 0.094 3.906 12 C -0.111 4.111 13 C -0.092 4.092 14 H 0.081 0.919 15 C -0.123 4.123 16 C 0.183 3.817 17 N -0.612 5.612 18 C -0.237 4.237 19 H 0.077 0.923 20 C -0.062 4.062 21 N -0.948 5.948 22 Si 0.972 3.028 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.293 1.293 26 C 0.151 3.849 27 H 0.002 0.998 28 C 0.128 3.872 29 C 0.171 3.829 30 N -0.513 5.513 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.216 0.784 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.025 0.975 48 H -0.002 1.002 49 H 0.247 0.753 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 20.434 -0.710 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.156 4.156 3 C -0.161 4.161 4 N -0.130 5.130 5 C 0.065 3.935 6 C -0.196 4.196 7 C -0.224 4.224 8 C 0.290 3.710 9 O -0.441 6.441 10 N -0.324 5.324 11 C -0.028 4.028 12 C -0.149 4.149 13 C -0.111 4.111 14 H 0.099 0.901 15 C -0.161 4.161 16 C 0.058 3.942 17 N -0.337 5.337 18 C -0.366 4.366 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.043 3.957 27 H 0.020 0.980 28 C 0.005 3.995 29 C -0.110 4.110 30 N -0.233 5.233 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.233 0.767 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.016 0.984 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.428 19.544 -1.144 27.581 hybrid contribution 2.183 -0.513 -0.574 2.314 sum -17.245 19.031 -1.718 25.740 Atomic orbital electron populations 1.20072 0.85881 1.03435 1.02565 1.21323 0.97833 0.88300 1.08122 1.22934 0.81032 1.01807 1.10288 1.45739 1.06648 1.06521 1.54078 1.21179 0.79647 0.90729 1.01922 1.22019 1.04990 1.00205 0.92426 1.22579 1.06154 0.98066 0.95565 1.20912 0.88101 0.80436 0.81502 1.90742 1.46777 1.64905 1.41712 1.48335 1.18306 1.47196 1.18539 1.22288 0.90425 0.98409 0.91643 1.21572 0.96265 0.94930 1.02119 1.22136 0.96311 0.96117 0.96567 0.90095 1.22586 0.96226 0.95581 1.01684 1.21331 0.90731 0.90906 0.91237 1.44429 1.08266 1.33077 1.47936 1.19344 0.86760 1.11995 1.18455 0.90520 1.25565 1.02058 0.97889 0.99972 1.70154 1.34832 1.19915 1.34741 0.85101 0.80075 0.77236 0.77509 1.19470 1.21422 1.22056 1.21081 0.89807 0.89223 0.95608 0.98024 1.21398 0.85437 0.91470 1.01193 1.24566 0.96541 0.82780 1.07136 1.70215 1.00693 1.32132 1.20217 0.91244 0.92315 0.88595 0.76700 0.89968 0.87443 0.93506 0.86953 0.89592 0.89308 0.88956 0.87355 0.92328 0.87636 0.89488 0.91766 0.95620 0.98376 0.94347 0.91980 0.90605 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.42 71.24 0.74 -0.09 16 2 C -0.03 -0.55 7.09 41.39 0.29 -0.25 16 3 C -0.03 -0.43 10.68 83.09 0.89 0.46 16 4 N -0.44 -8.53 1.45 -488.69 -0.71 -9.24 16 5 C 0.15 2.76 0.79 2.86 0.00 2.76 16 6 C -0.14 -2.27 7.98 71.98 0.57 -1.70 16 7 C -0.17 -1.70 7.89 71.98 0.57 -1.13 16 8 C 0.50 14.20 5.40 87.66 0.47 14.67 16 9 O -0.56 -20.94 15.29 -3.03 -0.05 -20.98 16 10 N -0.59 -16.52 2.57 -820.89 -2.11 -18.63 16 11 C 0.09 1.95 3.47 86.30 0.30 2.25 16 12 C -0.11 -2.67 5.53 30.20 0.17 -2.51 16 13 C -0.09 -2.96 2.61 -10.08 -0.03 -2.99 16 14 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 15 C -0.12 -4.43 6.57 31.62 0.21 -4.22 16 16 C 0.18 9.11 5.45 86.85 0.47 9.58 16 17 N -0.61 -31.80 3.35 -669.31 -2.24 -34.04 16 18 C -0.24 -13.52 9.88 84.03 0.83 -12.69 16 19 H 0.08 4.30 7.41 -2.91 -0.02 4.28 16 20 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 21 N -0.95 -57.71 10.43 21.65 0.23 -57.49 16 22 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 C 0.15 6.22 2.75 45.60 0.13 6.35 16 27 H 0.00 0.11 7.96 -2.39 -0.02 0.09 16 28 C 0.13 4.74 5.70 85.73 0.49 5.23 16 29 C 0.17 4.55 8.42 180.26 1.52 6.07 16 30 N -0.51 -14.14 11.25 -188.32 -2.12 -16.26 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 36 H 0.11 0.96 8.13 -2.39 -0.02 0.94 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 0.44 8.01 -2.39 -0.02 0.42 16 39 H 0.09 0.88 4.77 -2.38 -0.01 0.86 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.53 7.82 -2.39 -0.02 1.51 16 42 H 0.11 1.95 3.16 -2.39 -0.01 1.95 16 43 H 0.06 1.64 6.37 -2.39 -0.02 1.62 16 44 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.06 2.24 8.13 -2.38 -0.02 2.22 16 47 H 0.03 1.41 7.21 -2.38 -0.02 1.39 16 48 H 0.00 -0.12 7.77 -2.39 -0.02 -0.13 16 49 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.06 2.69 6.74 -2.39 -0.02 2.67 16 51 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 52 H 0.17 5.45 6.41 -2.91 -0.02 5.43 16 Total: -1.00 -77.31 388.79 4.03 -73.28 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.91 Total: 15.52 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 8.09 Total: 18.68 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -6.95 Total: -135.66 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.31 4.03 -73.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.504 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds