Wall clock time and date at job start Wed Apr 1 2020 04:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34668 * 125.98983 * 2 1 4 4 N 1.36880 * 106.81791 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.39772 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47294 * 51.74851 * 5 4 3 7 7 C 1.53008 * 109.46603 * 291.75433 * 5 4 3 8 8 C 1.50691 * 109.47430 * 171.75470 * 5 4 3 9 9 O 1.21287 * 120.00326 * 127.57828 * 8 5 4 10 10 N 1.34779 * 119.99808 * 307.58508 * 8 5 4 11 11 C 1.47130 * 121.21244 * 356.02576 * 10 8 5 12 12 C 1.52838 * 107.94779 * 237.33711 * 11 10 8 13 13 C 1.53092 * 110.57730 * 302.63160 * 12 11 10 14 14 H 1.09003 * 113.06223 * 288.99624 * 13 12 11 15 15 C 1.56025 * 106.38787 * 164.56595 * 13 12 11 16 16 C 1.54494 * 102.61108 * 281.63168 * 15 13 12 17 17 N 1.47431 * 107.15041 * 337.14593 * 16 15 13 18 18 C 1.36937 * 126.06041 * 178.42430 * 17 16 15 19 19 H 1.08001 * 119.99892 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00294 * 359.95415 * 18 17 16 21 21 N 1.31620 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 59.99536 * 22 20 18 24 24 H 1.48502 * 109.47200 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47108 * 299.99387 * 22 20 18 26 26 C 1.46462 * 107.88017 * 358.38360 * 17 16 15 27 27 H 1.09001 * 107.85977 * 270.36565 * 26 17 16 28 28 C 1.46767 * 121.21434 * 176.00263 * 10 8 5 29 29 C 1.35037 * 107.20654 * 0.25511 * 4 3 2 30 30 N 1.30507 * 108.69918 * 359.56970 * 29 4 3 31 31 H 1.09001 * 109.47309 * 90.00356 * 1 2 3 32 32 H 1.09006 * 109.47067 * 210.00760 * 1 2 3 33 33 H 1.08999 * 109.47665 * 330.00349 * 1 2 3 34 34 H 1.08006 * 126.59138 * 0.03241 * 3 2 1 35 35 H 1.09002 * 109.47393 * 186.46710 * 6 5 4 36 36 H 1.08999 * 109.47479 * 306.47638 * 6 5 4 37 37 H 1.09004 * 109.46761 * 66.47523 * 6 5 4 38 38 H 1.08996 * 109.47307 * 299.37907 * 7 5 4 39 39 H 1.08998 * 109.47339 * 59.38699 * 7 5 4 40 40 H 1.09000 * 109.46900 * 179.38412 * 7 5 4 41 41 H 1.09000 * 109.79496 * 117.71342 * 11 10 8 42 42 H 1.09005 * 109.76108 * 356.93697 * 11 10 8 43 43 H 1.09007 * 109.25491 * 182.34816 * 12 11 10 44 44 H 1.09000 * 109.22901 * 62.89690 * 12 11 10 45 45 H 1.08995 * 110.78254 * 39.91653 * 15 13 12 46 46 H 1.09005 * 110.78088 * 163.16353 * 15 13 12 47 47 H 1.08999 * 109.90650 * 96.53115 * 16 15 13 48 48 H 1.09008 * 109.90451 * 217.58497 * 16 15 13 49 49 H 0.96998 * 120.00305 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.22655 * 7.12119 * 28 10 8 51 51 H 1.09000 * 109.22932 * 247.71424 * 28 10 8 52 52 H 1.08000 * 125.65256 * 179.70918 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0896 0.0000 4 7 3.5912 0.6401 0.0006 5 6 4.7996 1.4684 0.0013 6 6 4.7148 2.4932 1.1342 7 6 4.9185 2.1980 -1.3384 8 6 6.0088 0.5928 0.2056 9 8 6.9420 0.6578 -0.5664 10 7 6.0533 -0.2628 1.2460 11 6 4.9757 -0.3026 2.2470 12 6 5.5974 -0.0436 3.6189 13 6 6.6903 -1.0733 3.9175 14 1 6.2956 -2.0708 4.1113 15 6 7.5158 -0.5050 5.1132 16 6 8.4182 0.5468 4.4305 17 7 8.5207 0.1739 3.0078 18 6 9.2050 0.8618 2.0415 19 1 9.2153 0.4980 1.0246 20 6 9.8850 2.0268 2.3687 21 7 9.8717 2.4707 3.6077 22 14 10.8189 2.9648 1.0506 23 1 9.8777 3.3868 -0.0177 24 1 11.4537 4.1647 1.6528 25 1 11.8675 2.0889 0.4689 26 6 7.7618 -1.0633 2.8114 27 1 8.4386 -1.9009 2.9799 28 6 7.1781 -1.1891 1.4215 29 6 3.5449 -0.7095 -0.0048 30 7 2.2951 -1.0852 0.0007 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5140 33 1 -0.3634 0.8900 0.5138 34 1 1.9750 2.1202 0.0005 35 1 5.5566 3.1822 1.0648 36 1 3.7815 3.0503 1.0512 37 1 4.7458 1.9773 2.0939 38 1 4.9900 1.4679 -2.1446 39 1 4.0387 2.8230 -1.4911 40 1 5.8117 2.8227 -1.3338 41 1 4.4990 -1.2828 2.2375 42 1 4.2380 0.4686 2.0252 43 1 4.8228 -0.1098 4.3830 44 1 6.0318 0.9560 3.6333 45 1 6.8607 -0.0350 5.8467 46 1 8.1140 -1.2891 5.5776 47 1 7.9705 1.5363 4.5234 48 1 9.4066 0.5424 4.8902 49 1 10.3465 3.2850 3.8364 50 1 7.9495 -0.9605 0.6861 51 1 6.8290 -2.2105 1.2699 52 1 4.4004 -1.3687 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042114320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:50 Heat of formation + Delta-G solvation = 78.241434 kcal Electronic energy + Delta-G solvation = -34013.120055 eV Core-core repulsion = 30015.384741 eV Total energy + Delta-G solvation = -3997.735315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57242 -40.16885 -38.45455 -35.83944 -35.15970 -32.92561 -31.88851 -31.29560 -30.47601 -29.35715 -28.54657 -27.49893 -26.88790 -24.96476 -24.35454 -22.88451 -22.52266 -21.60025 -20.17397 -20.03710 -19.45501 -18.20872 -17.86049 -16.65932 -16.04159 -15.64545 -15.41087 -14.90580 -14.82800 -14.53164 -14.28099 -14.07439 -13.93045 -13.72742 -13.39450 -13.28724 -13.01724 -12.95270 -12.75634 -12.50150 -12.47815 -12.33708 -12.11269 -12.02621 -11.92715 -11.64601 -11.50285 -11.39437 -11.17536 -10.96102 -10.83968 -10.71695 -10.18468 -9.97091 -9.92991 -9.91397 -9.72750 -9.64125 -9.55001 -9.36591 -8.57316 -8.35340 -8.28132 -6.81320 -5.68531 -3.00708 2.02188 2.28538 3.01833 3.09979 3.16510 3.44089 3.47320 3.51669 4.17457 4.53046 4.57177 4.61929 4.67836 4.79814 4.98682 5.03041 5.18680 5.24063 5.27799 5.37797 5.43686 5.44435 5.52041 5.55059 5.61928 5.62347 5.63658 5.68626 5.72664 5.79791 5.88679 5.91847 5.93966 6.00360 6.05322 6.09540 6.17633 6.23903 6.27390 6.37071 6.39616 6.56328 6.65652 6.73838 6.84088 6.96223 7.13032 7.57694 7.59674 7.62521 7.86155 8.07996 8.25589 8.32766 9.24735 9.85603 10.50185 11.43536 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.004603 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.795626 B = 6081.916025 C = 7224.306776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.006 4.006 3 C -0.052 4.052 4 N -0.446 5.446 5 C 0.145 3.855 6 C -0.164 4.164 7 C -0.140 4.140 8 C 0.523 3.477 9 O -0.511 6.511 10 N -0.586 5.586 11 C 0.095 3.905 12 C -0.122 4.122 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.144 4.144 16 C 0.179 3.821 17 N -0.589 5.589 18 C -0.214 4.214 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.925 5.925 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.286 1.286 26 C 0.154 3.846 27 H 0.029 0.971 28 C 0.111 3.889 29 C 0.191 3.809 30 N -0.491 5.491 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.170 0.830 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.041 0.959 49 H 0.250 0.750 50 H 0.097 0.903 51 H 0.059 0.941 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 -3.172 -2.622 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.184 4.184 4 N -0.131 5.131 5 C 0.058 3.942 6 C -0.222 4.222 7 C -0.198 4.198 8 C 0.307 3.693 9 O -0.384 6.384 10 N -0.319 5.319 11 C -0.027 4.027 12 C -0.160 4.160 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.182 4.182 16 C 0.055 3.945 17 N -0.314 5.314 18 C -0.342 4.342 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.213 1.213 26 C 0.046 3.954 27 H 0.046 0.954 28 C -0.012 4.012 29 C -0.091 4.091 30 N -0.210 5.210 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.188 0.812 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.115 0.885 51 H 0.077 0.923 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -15.903 -3.637 -3.058 16.598 hybrid contribution 1.004 1.491 -0.452 1.854 sum -14.899 -2.146 -3.510 15.456 Atomic orbital electron populations 1.19978 0.87909 1.02401 1.01878 1.20684 0.96341 0.88562 1.07869 1.22307 0.82719 1.00398 1.13019 1.45736 1.05990 1.07428 1.53906 1.21159 0.81625 0.91626 0.99798 1.22411 1.04116 0.98426 0.97236 1.21977 1.03454 1.00694 0.93660 1.19779 0.87595 0.80168 0.81736 1.90751 1.36832 1.65619 1.45230 1.47879 1.22271 1.37336 1.24384 1.22177 0.89459 1.02249 0.88865 1.21841 0.97662 1.01489 0.95001 1.22359 0.95301 0.97317 0.97052 0.90515 1.23167 0.98619 0.99788 0.96662 1.21194 0.96323 0.93836 0.83171 1.44285 1.57137 1.24528 1.05450 1.18984 1.22675 1.03175 0.89392 0.90128 1.24687 1.00977 0.98246 0.96327 1.69948 1.47232 1.23904 1.16264 0.86299 0.79880 0.79352 0.80957 1.21124 1.21875 1.21264 1.20701 0.91652 0.91666 0.91421 0.95406 1.21514 0.88917 0.90478 1.00294 1.25009 0.97029 0.82150 1.04895 1.70232 1.00130 1.30288 1.20347 0.91754 0.91361 0.91588 0.81228 0.89247 0.90839 0.89936 0.91289 0.91383 0.89413 0.91173 0.89517 0.91994 0.90105 0.92340 0.92680 0.93797 0.94114 0.93992 0.88458 0.92260 0.78378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.42 36.00 0.38 -0.20 16 2 C -0.01 -0.07 7.09 -82.86 -0.59 -0.66 16 3 C -0.05 -0.58 10.47 -16.56 -0.17 -0.76 16 4 N -0.45 -5.61 1.48 -105.82 -0.16 -5.77 16 5 C 0.15 1.99 0.79 -132.97 -0.10 1.88 16 6 C -0.16 -2.10 8.09 37.16 0.30 -1.80 16 7 C -0.14 -1.79 7.96 37.16 0.30 -1.49 16 8 C 0.52 9.02 5.73 -10.99 -0.06 8.96 16 9 O -0.51 -10.74 15.45 5.55 0.09 -10.65 16 10 N -0.59 -9.45 2.08 -174.10 -0.36 -9.81 16 11 C 0.10 1.31 3.46 -3.78 -0.01 1.30 16 12 C -0.12 -1.82 4.79 -26.77 -0.13 -1.94 16 13 C -0.10 -1.59 3.68 -88.43 -0.33 -1.91 16 14 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.14 -2.51 6.33 -24.33 -0.15 -2.67 16 16 C 0.18 4.11 4.61 -2.75 -0.01 4.10 16 17 N -0.59 -13.91 3.20 -164.42 -0.53 -14.44 16 18 C -0.21 -5.75 9.70 -15.06 -0.15 -5.89 16 19 H 0.08 2.22 6.51 -52.49 -0.34 1.88 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 21 N -0.93 -26.65 10.38 55.49 0.58 -26.07 16 22 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 C 0.15 2.91 2.97 -68.30 -0.20 2.71 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 C 0.11 1.92 5.69 -4.77 -0.03 1.90 16 29 C 0.19 2.62 8.77 -90.37 -0.79 1.83 16 30 N -0.49 -7.04 11.25 -10.88 -0.12 -7.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.17 1.43 7.81 -52.48 -0.41 1.02 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.73 7.42 -51.93 -0.39 0.35 16 37 H 0.08 1.13 4.76 -51.93 -0.25 0.88 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 41 H 0.07 0.90 7.42 -51.93 -0.39 0.52 16 42 H 0.09 1.16 3.45 -51.93 -0.18 0.98 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.48 6.49 -51.93 -0.34 1.14 16 45 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.04 1.12 7.04 -51.93 -0.37 0.76 16 48 H 0.04 1.06 7.57 -51.92 -0.39 0.67 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.10 1.99 5.53 -51.93 -0.29 1.70 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.20 2.71 6.49 -52.49 -0.34 2.37 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -31.60 385.05 -9.86 -41.46 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.29 Total: 3.86 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.85 Total: 5.08 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.59 Total: -63.24 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.60 -9.86 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.705 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds