Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34668 * 125.98983 * 2 1 4 4 N 1.36880 * 106.81791 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.39772 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47294 * 51.74851 * 5 4 3 7 7 C 1.53008 * 109.46603 * 291.75433 * 5 4 3 8 8 C 1.50691 * 109.47430 * 171.75470 * 5 4 3 9 9 O 1.21287 * 120.00326 * 127.57828 * 8 5 4 10 10 N 1.34779 * 119.99808 * 307.58508 * 8 5 4 11 11 C 1.47130 * 121.21244 * 356.02576 * 10 8 5 12 12 C 1.52838 * 107.94779 * 237.33711 * 11 10 8 13 13 C 1.53092 * 110.57730 * 302.63160 * 12 11 10 14 14 H 1.09003 * 113.06223 * 288.99624 * 13 12 11 15 15 C 1.56025 * 106.38787 * 164.56595 * 13 12 11 16 16 C 1.54494 * 102.61108 * 281.63168 * 15 13 12 17 17 N 1.47431 * 107.15041 * 337.14593 * 16 15 13 18 18 C 1.36937 * 126.06041 * 178.42430 * 17 16 15 19 19 H 1.08001 * 119.99892 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00294 * 359.95415 * 18 17 16 21 21 N 1.31620 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 59.99536 * 22 20 18 24 24 H 1.48502 * 109.47200 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47108 * 299.99387 * 22 20 18 26 26 C 1.46462 * 107.88017 * 358.38360 * 17 16 15 27 27 H 1.09001 * 107.85977 * 270.36565 * 26 17 16 28 28 C 1.46767 * 121.21434 * 176.00263 * 10 8 5 29 29 C 1.35037 * 107.20654 * 0.25511 * 4 3 2 30 30 N 1.30507 * 108.69918 * 359.56970 * 29 4 3 31 31 H 1.09001 * 109.47309 * 90.00356 * 1 2 3 32 32 H 1.09006 * 109.47067 * 210.00760 * 1 2 3 33 33 H 1.08999 * 109.47665 * 330.00349 * 1 2 3 34 34 H 1.08006 * 126.59138 * 0.03241 * 3 2 1 35 35 H 1.09002 * 109.47393 * 186.46710 * 6 5 4 36 36 H 1.08999 * 109.47479 * 306.47638 * 6 5 4 37 37 H 1.09004 * 109.46761 * 66.47523 * 6 5 4 38 38 H 1.08996 * 109.47307 * 299.37907 * 7 5 4 39 39 H 1.08998 * 109.47339 * 59.38699 * 7 5 4 40 40 H 1.09000 * 109.46900 * 179.38412 * 7 5 4 41 41 H 1.09000 * 109.79496 * 117.71342 * 11 10 8 42 42 H 1.09005 * 109.76108 * 356.93697 * 11 10 8 43 43 H 1.09007 * 109.25491 * 182.34816 * 12 11 10 44 44 H 1.09000 * 109.22901 * 62.89690 * 12 11 10 45 45 H 1.08995 * 110.78254 * 39.91653 * 15 13 12 46 46 H 1.09005 * 110.78088 * 163.16353 * 15 13 12 47 47 H 1.08999 * 109.90650 * 96.53115 * 16 15 13 48 48 H 1.09008 * 109.90451 * 217.58497 * 16 15 13 49 49 H 0.96998 * 120.00305 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.22655 * 7.12119 * 28 10 8 51 51 H 1.09000 * 109.22932 * 247.71424 * 28 10 8 52 52 H 1.08000 * 125.65256 * 179.70918 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0896 0.0000 4 7 3.5912 0.6401 0.0006 5 6 4.7996 1.4684 0.0013 6 6 4.7148 2.4932 1.1342 7 6 4.9185 2.1980 -1.3384 8 6 6.0088 0.5928 0.2056 9 8 6.9420 0.6578 -0.5664 10 7 6.0533 -0.2628 1.2460 11 6 4.9757 -0.3026 2.2470 12 6 5.5974 -0.0436 3.6189 13 6 6.6903 -1.0733 3.9175 14 1 6.2956 -2.0708 4.1113 15 6 7.5158 -0.5050 5.1132 16 6 8.4182 0.5468 4.4305 17 7 8.5207 0.1739 3.0078 18 6 9.2050 0.8618 2.0415 19 1 9.2153 0.4980 1.0246 20 6 9.8850 2.0268 2.3687 21 7 9.8717 2.4707 3.6077 22 14 10.8189 2.9648 1.0506 23 1 9.8777 3.3868 -0.0177 24 1 11.4537 4.1647 1.6528 25 1 11.8675 2.0889 0.4689 26 6 7.7618 -1.0633 2.8114 27 1 8.4386 -1.9009 2.9799 28 6 7.1781 -1.1891 1.4215 29 6 3.5449 -0.7095 -0.0048 30 7 2.2951 -1.0852 0.0007 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5140 33 1 -0.3634 0.8900 0.5138 34 1 1.9750 2.1202 0.0005 35 1 5.5566 3.1822 1.0648 36 1 3.7815 3.0503 1.0512 37 1 4.7458 1.9773 2.0939 38 1 4.9900 1.4679 -2.1446 39 1 4.0387 2.8230 -1.4911 40 1 5.8117 2.8227 -1.3338 41 1 4.4990 -1.2828 2.2375 42 1 4.2380 0.4686 2.0252 43 1 4.8228 -0.1098 4.3830 44 1 6.0318 0.9560 3.6333 45 1 6.8607 -0.0350 5.8467 46 1 8.1140 -1.2891 5.5776 47 1 7.9705 1.5363 4.5234 48 1 9.4066 0.5424 4.8902 49 1 10.3465 3.2850 3.8364 50 1 7.9495 -0.9605 0.6861 51 1 6.8290 -2.2105 1.2699 52 1 4.4004 -1.3687 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042114320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = 60.692040 kcal Electronic energy + Delta-G solvation = -34013.881054 eV Core-core repulsion = 30015.384741 eV Total energy + Delta-G solvation = -3998.496314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.58274 -41.46928 -39.91059 -37.06344 -36.59112 -34.70863 -32.93252 -32.72066 -31.50447 -30.84861 -30.18389 -28.54080 -27.80340 -26.59505 -25.97779 -24.13498 -23.75855 -22.75523 -21.75502 -21.09814 -20.77286 -19.50948 -19.04812 -18.48535 -17.34641 -16.95762 -16.76972 -16.45626 -16.04298 -15.88202 -15.80628 -15.42126 -15.25426 -14.81480 -14.62844 -14.40628 -14.32481 -14.20864 -13.95415 -13.74359 -13.49996 -13.36133 -13.25679 -13.19757 -13.18212 -13.07502 -12.91020 -12.79530 -12.67796 -12.61728 -12.38171 -12.33917 -12.07984 -11.66959 -11.43881 -11.33486 -11.20716 -10.96145 -10.84187 -10.66922 -10.49218 -9.66088 -9.20767 -8.80836 -7.83037 -5.13138 1.07197 1.13175 1.37373 1.38487 1.45871 1.78956 1.96105 2.16329 2.47617 3.00405 3.35480 3.49185 3.55747 3.63325 3.69182 3.79642 3.85147 3.86447 4.06230 4.20658 4.31308 4.39466 4.40609 4.42060 4.45930 4.51004 4.53921 4.58095 4.61099 4.61442 4.70951 4.76881 4.81389 4.93022 4.97928 5.00185 5.01502 5.07938 5.08618 5.14200 5.22325 5.25235 5.34688 5.52492 5.54233 5.60858 5.71043 5.81897 5.90838 6.13329 6.23002 6.32432 7.00138 7.14063 7.15481 7.83234 8.46840 9.27298 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.004603 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.795626 B = 6081.916025 C = 7224.306776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.021 4.021 3 C -0.043 4.043 4 N -0.443 5.443 5 C 0.157 3.843 6 C -0.160 4.160 7 C -0.136 4.136 8 C 0.512 3.488 9 O -0.561 6.561 10 N -0.584 5.584 11 C 0.102 3.898 12 C -0.117 4.117 13 C -0.085 4.085 14 H 0.119 0.881 15 C -0.130 4.130 16 C 0.188 3.812 17 N -0.604 5.604 18 C -0.202 4.202 19 H 0.068 0.932 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.952 3.048 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.144 3.856 27 H 0.028 0.972 28 C 0.114 3.886 29 C 0.177 3.823 30 N -0.511 5.511 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.203 0.797 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.009 0.991 48 H -0.002 1.002 49 H 0.242 0.758 50 H 0.059 0.941 51 H 0.097 0.903 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.063 -3.942 -2.183 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.150 4.150 3 C -0.175 4.175 4 N -0.128 5.128 5 C 0.069 3.931 6 C -0.217 4.217 7 C -0.194 4.194 8 C 0.298 3.702 9 O -0.438 6.438 10 N -0.316 5.316 11 C -0.020 4.020 12 C -0.155 4.155 13 C -0.104 4.104 14 H 0.137 0.863 15 C -0.168 4.168 16 C 0.063 3.937 17 N -0.329 5.329 18 C -0.332 4.332 19 H 0.086 0.914 20 C -0.253 4.253 21 N -0.598 5.598 22 Si 0.782 3.218 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.211 1.211 26 C 0.037 3.963 27 H 0.046 0.954 28 C -0.010 4.010 29 C -0.105 4.105 30 N -0.231 5.231 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.220 0.780 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.028 0.972 48 H 0.016 0.984 49 H 0.051 0.949 50 H 0.078 0.922 51 H 0.115 0.885 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.553 -4.451 -2.604 20.222 hybrid contribution 2.099 1.645 -0.622 2.739 sum -17.454 -2.805 -3.226 17.970 Atomic orbital electron populations 1.20063 0.85845 1.03374 1.02622 1.21239 0.97734 0.88211 1.07768 1.22843 0.81511 1.01778 1.11365 1.45649 1.06084 1.07010 1.54080 1.20950 0.80637 0.90977 1.00553 1.22387 1.05148 0.97907 0.96263 1.21959 1.04203 1.00464 0.92783 1.20491 0.88262 0.80138 0.81300 1.90722 1.38948 1.67175 1.46969 1.47984 1.22288 1.36645 1.24634 1.22291 0.88639 1.03721 0.87332 1.21796 0.98059 0.98983 0.96660 1.22400 0.94249 0.99589 0.94146 0.86291 1.23029 0.98158 0.98368 0.97270 1.20936 0.95085 0.94436 0.83239 1.44452 1.57441 1.25709 1.05280 1.19039 1.21720 1.02861 0.89572 0.91395 1.25249 1.02727 0.99530 0.97757 1.70129 1.48389 1.23987 1.17345 0.85540 0.78795 0.78375 0.79053 1.21633 1.21758 1.21132 1.20983 0.92452 0.89198 0.93683 0.95448 1.21387 0.88811 0.92648 0.98108 1.24910 0.96918 0.82542 1.06143 1.70234 1.00524 1.31538 1.20786 0.91083 0.91831 0.89208 0.77968 0.91439 0.87083 0.90770 0.92477 0.87999 0.91182 0.89037 0.88691 0.88621 0.93941 0.90130 0.91415 0.97249 0.98403 0.94867 0.92233 0.88525 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.42 71.23 0.74 -0.14 16 2 C -0.02 -0.44 7.09 41.39 0.29 -0.15 16 3 C -0.04 -0.80 10.47 83.09 0.87 0.07 16 4 N -0.44 -10.06 1.48 -488.70 -0.72 -10.79 16 5 C 0.16 4.10 0.79 2.86 0.00 4.10 16 6 C -0.16 -3.83 8.09 71.98 0.58 -3.25 16 7 C -0.14 -3.35 7.96 71.98 0.57 -2.78 16 8 C 0.51 17.86 5.73 87.65 0.50 18.37 16 9 O -0.56 -24.70 15.45 -3.05 -0.05 -24.75 16 10 N -0.58 -18.44 2.08 -823.12 -1.71 -20.15 16 11 C 0.10 2.53 3.46 86.21 0.30 2.83 16 12 C -0.12 -3.15 4.79 30.57 0.15 -3.01 16 13 C -0.08 -2.41 3.68 -9.37 -0.03 -2.44 16 14 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 15 C -0.13 -4.28 6.33 32.15 0.20 -4.08 16 16 C 0.19 8.87 4.61 86.71 0.40 9.27 16 17 N -0.60 -29.33 3.20 -674.12 -2.15 -31.48 16 18 C -0.20 -11.33 9.70 84.03 0.81 -10.52 16 19 H 0.07 3.94 6.51 -2.91 -0.02 3.92 16 20 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 21 N -0.95 -57.22 10.38 21.65 0.22 -56.99 16 22 Si 0.95 48.65 29.55 68.60 2.03 50.68 16 23 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 26 C 0.14 5.32 2.97 44.77 0.13 5.46 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 C 0.11 3.91 5.69 85.76 0.49 4.39 16 29 C 0.18 4.49 8.77 180.26 1.58 6.07 16 30 N -0.51 -13.42 11.25 -188.32 -2.12 -15.54 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.20 2.29 7.81 -2.91 -0.02 2.27 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 1.79 7.42 -2.39 -0.02 1.77 16 37 H 0.07 1.91 4.76 -2.38 -0.01 1.90 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 41 H 0.09 1.98 7.42 -2.39 -0.02 1.96 16 42 H 0.10 2.26 3.45 -2.38 -0.01 2.25 16 43 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.04 1.51 6.49 -2.39 -0.02 1.49 16 45 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 46 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.01 0.50 7.04 -2.39 -0.02 0.48 16 48 H 0.00 -0.13 7.57 -2.38 -0.02 -0.14 16 49 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.06 2.53 5.53 -2.39 -0.01 2.51 16 51 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 52 H 0.19 5.01 6.49 -2.91 -0.02 5.00 16 Total: -1.00 -74.69 385.05 4.48 -70.21 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.92 Total: 17.65 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 8.06 Total: 21.17 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -6.48 Total: -134.95 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -74.69 4.48 -70.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042114320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.898 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds