Wall clock time and date at job start Wed Apr 1 2020 03:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34264 * 126.29119 * 2 1 4 4 H 0.97000 * 125.75241 * 359.73891 * 3 2 1 5 5 N 1.39933 * 108.49025 * 179.97438 * 3 2 1 6 6 C 1.30440 * 108.89863 * 0.02562 * 5 3 2 7 7 C 1.50705 * 125.98945 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.47086 * 299.97955 * 7 6 5 9 9 C 1.53005 * 109.46531 * 59.97770 * 7 6 5 10 10 C 1.38036 * 126.29226 * 179.97438 * 2 1 3 11 11 C 1.47430 * 126.41596 * 0.02562 * 10 2 1 12 12 O 1.21603 * 119.99843 * 90.02390 * 11 10 2 13 13 N 1.34775 * 120.00354 * 270.02163 * 11 10 2 14 14 C 1.47153 * 121.20800 * 359.72173 * 13 11 10 15 15 C 1.52348 * 108.23750 * 237.24791 * 14 13 11 16 16 C 1.53091 * 110.64638 * 302.87304 * 15 14 13 17 17 H 1.08999 * 113.05963 * 288.88444 * 16 15 14 18 18 C 1.56022 * 106.39754 * 164.45981 * 16 15 14 19 19 C 1.54504 * 102.60808 * 281.62042 * 18 16 15 20 20 N 1.47435 * 107.15031 * 337.15028 * 19 18 16 21 21 C 1.36936 * 126.06156 * 178.35362 * 20 19 18 22 22 H 1.07998 * 119.99755 * 180.02562 * 21 20 19 23 23 C 1.38808 * 119.99821 * 0.02808 * 21 20 19 24 24 N 1.31617 * 120.00447 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 120.00009 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46650 * 0.02562 * 25 23 21 27 27 H 1.48491 * 109.47163 * 119.99957 * 25 23 21 28 28 H 1.48501 * 109.47031 * 240.00411 * 25 23 21 29 29 C 1.46466 * 107.87904 * 358.38184 * 20 19 18 30 30 H 1.09004 * 108.41607 * 270.75900 * 29 20 19 31 31 C 1.46751 * 121.21561 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.47099 * 89.97343 * 1 2 3 33 33 H 1.08996 * 109.47300 * 209.97955 * 1 2 3 34 34 H 1.08999 * 109.47381 * 329.97589 * 1 2 3 35 35 H 1.09002 * 109.47208 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47115 * 59.99916 * 8 7 6 37 37 H 1.09003 * 109.46739 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.46956 * 299.99267 * 8 7 6 39 39 H 1.09002 * 109.47050 * 299.99700 * 9 7 6 40 40 H 1.09003 * 109.47228 * 60.00163 * 9 7 6 41 41 H 1.09004 * 109.46717 * 180.02562 * 9 7 6 42 42 H 1.08996 * 109.76295 * 356.89585 * 14 13 11 43 43 H 1.08997 * 109.75898 * 117.65800 * 14 13 11 44 44 H 1.09001 * 109.32029 * 182.50336 * 15 14 13 45 45 H 1.08994 * 109.08869 * 63.09851 * 15 14 13 46 46 H 1.08997 * 110.78237 * 163.33953 * 18 16 15 47 47 H 1.09003 * 110.78240 * 39.89354 * 18 16 15 48 48 H 1.09006 * 109.89908 * 217.77552 * 19 18 16 49 49 H 1.08996 * 109.90776 * 96.53952 * 19 18 16 50 50 H 0.97005 * 120.00280 * 179.97438 * 24 23 21 51 51 H 1.09004 * 109.22813 * 247.80804 * 31 13 11 52 52 H 1.09003 * 109.22873 * 7.17625 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0026 2.0049 -0.0036 5 7 3.6340 0.6544 0.0006 6 6 3.6590 -0.6498 0.0004 7 6 4.8951 -1.5118 0.0014 8 6 5.7270 -1.2121 -1.2472 9 6 5.7251 -1.2117 1.2513 10 6 2.3240 -1.1126 0.0005 11 6 1.8858 -2.5202 0.0006 12 8 1.7059 -3.1011 -1.0525 13 7 1.6846 -3.1634 1.1678 14 6 1.9002 -2.4882 2.4574 15 6 2.9243 -3.2904 3.2502 16 6 2.4524 -4.7349 3.4355 17 1 1.6166 -4.8254 4.1292 18 6 3.7032 -5.5528 3.8836 19 6 4.4624 -5.7634 2.5546 20 7 3.4776 -5.6305 1.4655 21 6 3.7421 -5.7153 0.1246 22 1 2.9420 -5.6018 -0.5918 23 6 5.0387 -5.9470 -0.3136 24 7 6.0137 -6.0857 0.5596 25 14 5.3998 -6.0619 -2.1429 26 1 4.1418 -5.8715 -2.9086 27 1 6.3740 -5.0073 -2.5223 28 1 5.9707 -7.3975 -2.4518 29 6 2.1660 -5.3912 2.0720 30 1 1.6916 -6.3548 2.2580 31 6 1.2480 -4.5641 1.1989 32 1 -0.3633 0.0005 -1.0277 33 1 -0.3634 -0.8901 0.5135 34 1 -0.3634 0.8897 0.5142 35 1 4.6053 -2.5626 0.0014 36 1 6.0168 -0.1613 -1.2472 37 1 6.6212 -1.8354 -1.2462 38 1 5.1357 -1.4260 -2.1376 39 1 6.0149 -0.1609 1.2513 40 1 5.1324 -1.4252 2.1409 41 1 6.6194 -1.8349 1.2518 42 1 2.2768 -1.4797 2.2870 43 1 0.9624 -2.4435 3.0112 44 1 3.0645 -2.8298 4.2282 45 1 3.8725 -3.2880 2.7128 46 1 3.4061 -6.5087 4.3149 47 1 4.3075 -4.9807 4.5877 48 1 4.9059 -6.7590 2.5343 49 1 5.2392 -5.0064 2.4469 50 1 6.9197 -6.2480 0.2533 51 1 0.2336 -4.6152 1.5947 52 1 1.2580 -4.9658 0.1857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042306432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:07 Heat of formation + Delta-G solvation = 56.979387 kcal Electronic energy + Delta-G solvation = -34227.552661 eV Core-core repulsion = 30228.895354 eV Total energy + Delta-G solvation = -3998.657306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40577 -39.58013 -37.72236 -35.41892 -34.83241 -32.74893 -32.09655 -31.19658 -30.63661 -28.96266 -28.32840 -27.22301 -26.72072 -24.58756 -24.04160 -22.98252 -22.42767 -21.70164 -19.92159 -19.18638 -18.75966 -18.21974 -17.35971 -16.46492 -16.28306 -15.35191 -14.99992 -14.68598 -14.58960 -14.31077 -14.18432 -14.00330 -13.82993 -13.52997 -13.17614 -13.10907 -12.84338 -12.73303 -12.54319 -12.47175 -12.26153 -11.91764 -11.74957 -11.56122 -11.32799 -11.18971 -11.17227 -10.90920 -10.75643 -10.73149 -10.64932 -10.63450 -10.22523 -10.01091 -9.79455 -9.74613 -9.58364 -9.42939 -9.32035 -9.20085 -8.46668 -8.38109 -8.01525 -6.69149 -5.57450 -2.88725 1.78986 2.66737 2.78693 3.17485 3.51146 3.58518 3.65415 3.67043 4.50811 4.64359 4.74024 4.88677 5.10422 5.19654 5.28035 5.31268 5.32589 5.43248 5.56204 5.58932 5.62600 5.64097 5.71301 5.77752 5.80977 5.88138 5.91563 5.92942 6.05603 6.07086 6.13107 6.20829 6.24425 6.27804 6.33688 6.35948 6.44490 6.50086 6.56319 6.64437 6.66874 6.68728 6.81226 6.82596 7.03109 7.19777 7.25324 7.69038 7.71571 7.75530 7.98289 8.02168 8.36649 8.82411 9.36641 9.97163 10.61733 11.54596 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.006069 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.860396 B = 4612.739833 C = 5630.999134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 N -0.470 5.470 4 H 0.437 0.563 5 N -0.295 5.295 6 C 0.136 3.864 7 C -0.022 4.022 8 C -0.137 4.137 9 C -0.132 4.132 10 C -0.262 4.262 11 C 0.603 3.397 12 O -0.531 6.531 13 N -0.586 5.586 14 C 0.117 3.883 15 C -0.123 4.123 16 C -0.101 4.101 17 H 0.074 0.926 18 C -0.144 4.144 19 C 0.179 3.821 20 N -0.586 5.586 21 C -0.209 4.209 22 H 0.081 0.919 23 C -0.005 4.005 24 N -0.923 5.923 25 Si 0.895 3.105 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.294 1.294 29 C 0.154 3.846 30 H 0.025 0.975 31 C 0.113 3.887 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.040 0.960 49 H 0.046 0.954 50 H 0.248 0.752 51 H 0.053 0.947 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 13.203 6.417 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.018 4.018 3 N -0.176 5.176 4 H 0.281 0.719 5 N -0.116 5.116 6 C -0.032 4.032 7 C -0.043 4.043 8 C -0.195 4.195 9 C -0.190 4.190 10 C -0.277 4.277 11 C 0.389 3.611 12 O -0.407 6.407 13 N -0.318 5.318 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.121 4.121 17 H 0.092 0.908 18 C -0.183 4.183 19 C 0.055 3.945 20 N -0.312 5.312 21 C -0.337 4.337 22 H 0.099 0.901 23 C -0.200 4.200 24 N -0.572 5.572 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.222 1.222 29 C 0.046 3.954 30 H 0.042 0.958 31 C -0.010 4.010 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.742 13.889 5.677 17.365 hybrid contribution -0.289 -0.267 -0.884 0.967 sum -9.031 13.622 4.793 17.032 Atomic orbital electron populations 1.20492 0.86875 1.03956 1.03876 1.21269 0.94191 0.86918 0.99430 1.45950 1.04305 1.07868 1.59485 0.71947 1.77044 0.95174 1.12793 1.26613 1.22420 0.94440 0.90739 0.95573 1.19766 0.89396 0.98675 0.96429 1.21745 0.99793 1.01207 0.96783 1.21720 0.99855 1.01067 0.96394 1.19985 0.93009 0.93672 1.21032 1.17123 0.76373 0.84362 0.83279 1.90768 1.51204 1.67685 1.31039 1.47736 1.66768 1.12206 1.05095 1.21444 0.98535 0.96321 0.84381 1.21752 1.00322 0.94882 0.99125 1.22373 0.97528 0.94783 0.97416 0.90820 1.23171 0.96902 0.98450 0.99756 1.21205 0.90520 1.00354 0.82429 1.44267 1.01281 1.83542 1.02071 1.19072 0.93338 1.40568 0.80745 0.90084 1.24624 0.95807 1.02610 0.96968 1.69962 0.99690 1.56492 1.31038 0.86248 0.78144 0.76987 0.85968 1.20233 1.21793 1.22186 1.20695 0.89054 0.94810 0.90863 0.95759 1.21403 0.95635 0.80613 1.03336 0.89686 0.89501 0.90763 0.87561 0.92703 0.91777 0.92775 0.92908 0.92773 0.91627 0.90689 0.92326 0.92348 0.89868 0.92870 0.92418 0.94220 0.93601 0.94189 0.92865 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.25 36.00 0.37 -0.48 16 2 C 0.11 1.47 7.29 -81.60 -0.60 0.87 16 3 N -0.47 -5.61 7.29 33.86 0.25 -5.37 16 4 H 0.44 3.46 8.96 -182.72 -1.64 1.82 16 5 N -0.29 -4.56 12.63 33.90 0.43 -4.13 16 6 C 0.14 2.34 5.74 -82.02 -0.47 1.87 16 7 C -0.02 -0.41 3.31 -91.77 -0.30 -0.71 16 8 C -0.14 -2.40 9.18 37.16 0.34 -2.05 16 9 C -0.13 -2.15 9.18 37.16 0.34 -1.81 16 10 C -0.26 -4.44 3.88 -105.07 -0.41 -4.85 16 11 C 0.60 11.72 6.57 -12.52 -0.08 11.64 16 12 O -0.53 -12.54 16.56 5.28 0.09 -12.45 16 13 N -0.59 -10.21 2.98 -175.64 -0.52 -10.73 16 14 C 0.12 1.67 6.32 -4.02 -0.03 1.64 16 15 C -0.12 -1.89 5.02 -27.02 -0.14 -2.02 16 16 C -0.10 -1.63 3.68 -88.43 -0.33 -1.95 16 17 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.14 -2.55 6.33 -24.32 -0.15 -2.71 16 19 C 0.18 4.15 4.61 -2.74 -0.01 4.13 16 20 N -0.59 -14.01 3.20 -164.40 -0.53 -14.53 16 21 C -0.21 -5.69 9.70 -15.06 -0.15 -5.83 16 22 H 0.08 2.30 6.51 -52.49 -0.34 1.96 16 23 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.56 10.38 55.49 0.58 -25.99 16 25 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 26 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 29 C 0.15 2.99 2.97 -68.28 -0.20 2.79 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 C 0.11 2.07 5.69 -4.76 -0.03 2.05 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 2.40 7.56 -51.93 -0.39 2.01 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.86 7.84 -51.93 -0.41 0.46 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.07 6.37 -51.93 -0.33 0.74 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.58 6.55 -51.93 -0.34 1.24 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 48 H 0.04 1.04 7.57 -51.93 -0.39 0.65 16 49 H 0.05 1.18 7.04 -51.93 -0.37 0.81 16 50 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.10 2.06 5.53 -51.93 -0.29 1.77 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -33.03 403.15 -10.55 -43.58 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -9.96 Total: 3.04 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.93 Total: 2.36 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.20 Total: -60.75 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.03 -10.55 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042306432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.556 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds