Wall clock time and date at job start Wed Apr 1 2020 03:45:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.34264 * 126.29119 * 2 1
4 4 H 0.97000 * 125.75241 * 359.73891 * 3 2 1
5 5 N 1.39933 * 108.49025 * 179.97438 * 3 2 1
6 6 C 1.30440 * 108.89863 * 0.02562 * 5 3 2
7 7 C 1.50705 * 125.98945 * 180.02562 * 6 5 3
8 8 C 1.52999 * 109.47086 * 299.97955 * 7 6 5
9 9 C 1.53005 * 109.46531 * 59.97770 * 7 6 5
10 10 C 1.38036 * 126.29226 * 179.97438 * 2 1 3
11 11 C 1.47430 * 126.41596 * 0.02562 * 10 2 1
12 12 O 1.21603 * 119.99843 * 90.02390 * 11 10 2
13 13 N 1.34775 * 120.00354 * 270.02163 * 11 10 2
14 14 C 1.47153 * 121.20800 * 359.72173 * 13 11 10
15 15 C 1.52348 * 108.23750 * 237.24791 * 14 13 11
16 16 C 1.53091 * 110.64638 * 302.87304 * 15 14 13
17 17 H 1.08999 * 113.05963 * 288.88444 * 16 15 14
18 18 C 1.56022 * 106.39754 * 164.45981 * 16 15 14
19 19 C 1.54504 * 102.60808 * 281.62042 * 18 16 15
20 20 N 1.47435 * 107.15031 * 337.15028 * 19 18 16
21 21 C 1.36936 * 126.06156 * 178.35362 * 20 19 18
22 22 H 1.07998 * 119.99755 * 180.02562 * 21 20 19
23 23 C 1.38808 * 119.99821 * 0.02808 * 21 20 19
24 24 N 1.31617 * 120.00447 * 0.02562 * 23 21 20
25 25 Si 1.86810 * 120.00009 * 180.02562 * 23 21 20
26 26 H 1.48504 * 109.46650 * 0.02562 * 25 23 21
27 27 H 1.48491 * 109.47163 * 119.99957 * 25 23 21
28 28 H 1.48501 * 109.47031 * 240.00411 * 25 23 21
29 29 C 1.46466 * 107.87904 * 358.38184 * 20 19 18
30 30 H 1.09004 * 108.41607 * 270.75900 * 29 20 19
31 31 C 1.46751 * 121.21561 * 179.97438 * 13 11 10
32 32 H 1.08999 * 109.47099 * 89.97343 * 1 2 3
33 33 H 1.08996 * 109.47300 * 209.97955 * 1 2 3
34 34 H 1.08999 * 109.47381 * 329.97589 * 1 2 3
35 35 H 1.09002 * 109.47208 * 179.97438 * 7 6 5
36 36 H 1.09002 * 109.47115 * 59.99916 * 8 7 6
37 37 H 1.09003 * 109.46739 * 179.97438 * 8 7 6
38 38 H 1.08993 * 109.46956 * 299.99267 * 8 7 6
39 39 H 1.09002 * 109.47050 * 299.99700 * 9 7 6
40 40 H 1.09003 * 109.47228 * 60.00163 * 9 7 6
41 41 H 1.09004 * 109.46717 * 180.02562 * 9 7 6
42 42 H 1.08996 * 109.76295 * 356.89585 * 14 13 11
43 43 H 1.08997 * 109.75898 * 117.65800 * 14 13 11
44 44 H 1.09001 * 109.32029 * 182.50336 * 15 14 13
45 45 H 1.08994 * 109.08869 * 63.09851 * 15 14 13
46 46 H 1.08997 * 110.78237 * 163.33953 * 18 16 15
47 47 H 1.09003 * 110.78240 * 39.89354 * 18 16 15
48 48 H 1.09006 * 109.89908 * 217.77552 * 19 18 16
49 49 H 1.08996 * 109.90776 * 96.53952 * 19 18 16
50 50 H 0.97005 * 120.00280 * 179.97438 * 24 23 21
51 51 H 1.09004 * 109.22813 * 247.80804 * 31 13 11
52 52 H 1.09003 * 109.22873 * 7.17625 * 31 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3017 1.0822 0.0000
4 1 2.0026 2.0049 -0.0036
5 7 3.6340 0.6544 0.0006
6 6 3.6590 -0.6498 0.0004
7 6 4.8951 -1.5118 0.0014
8 6 5.7270 -1.2121 -1.2472
9 6 5.7251 -1.2117 1.2513
10 6 2.3240 -1.1126 0.0005
11 6 1.8858 -2.5202 0.0006
12 8 1.7059 -3.1011 -1.0525
13 7 1.6846 -3.1634 1.1678
14 6 1.9002 -2.4882 2.4574
15 6 2.9243 -3.2904 3.2502
16 6 2.4524 -4.7349 3.4355
17 1 1.6166 -4.8254 4.1292
18 6 3.7032 -5.5528 3.8836
19 6 4.4624 -5.7634 2.5546
20 7 3.4776 -5.6305 1.4655
21 6 3.7421 -5.7153 0.1246
22 1 2.9420 -5.6018 -0.5918
23 6 5.0387 -5.9470 -0.3136
24 7 6.0137 -6.0857 0.5596
25 14 5.3998 -6.0619 -2.1429
26 1 4.1418 -5.8715 -2.9086
27 1 6.3740 -5.0073 -2.5223
28 1 5.9707 -7.3975 -2.4518
29 6 2.1660 -5.3912 2.0720
30 1 1.6916 -6.3548 2.2580
31 6 1.2480 -4.5641 1.1989
32 1 -0.3633 0.0005 -1.0277
33 1 -0.3634 -0.8901 0.5135
34 1 -0.3634 0.8897 0.5142
35 1 4.6053 -2.5626 0.0014
36 1 6.0168 -0.1613 -1.2472
37 1 6.6212 -1.8354 -1.2462
38 1 5.1357 -1.4260 -2.1376
39 1 6.0149 -0.1609 1.2513
40 1 5.1324 -1.4252 2.1409
41 1 6.6194 -1.8349 1.2518
42 1 2.2768 -1.4797 2.2870
43 1 0.9624 -2.4435 3.0112
44 1 3.0645 -2.8298 4.2282
45 1 3.8725 -3.2880 2.7128
46 1 3.4061 -6.5087 4.3149
47 1 4.3075 -4.9807 4.5877
48 1 4.9059 -6.7590 2.5343
49 1 5.2392 -5.0064 2.4469
50 1 6.9197 -6.2480 0.2533
51 1 0.2336 -4.6152 1.5947
52 1 1.2580 -4.9658 0.1857
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001042306432.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:45:06
Heat of formation + Delta-G solvation = 35.308151 kcal
Electronic energy + Delta-G solvation = -34228.492396 eV
Core-core repulsion = 30228.895354 eV
Total energy + Delta-G solvation = -3999.597042 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.58907 -41.02553 -39.28394 -36.76006 -36.42613 -34.58374 -33.16768 -32.76590
-31.98561 -30.45319 -30.01993 -28.25282 -28.12744 -26.43129 -25.60420 -24.28062
-23.81372 -23.01487 -21.67010 -20.59235 -20.06137 -19.60637 -18.60847 -18.33609
-17.62477 -16.92493 -16.54042 -16.14049 -15.91175 -15.85437 -15.65529 -15.55960
-15.34355 -15.06951 -14.41397 -14.28015 -14.26702 -14.05474 -13.90627 -13.59214
-13.54615 -13.32029 -13.14085 -13.11045 -13.04418 -12.93920 -12.63298 -12.52820
-12.46289 -12.32162 -12.17724 -12.02778 -12.00938 -11.62028 -11.57986 -11.34098
-11.20482 -11.07517 -10.78984 -10.60608 -10.35371 -9.56137 -9.42967 -8.71712
-7.77219 -5.05131 0.71180 1.34800 1.38255 1.38599 1.48780 1.68586
1.82955 2.34869 2.51423 3.37797 3.41906 3.56534 3.65794 3.90104
3.94129 3.98828 4.02438 4.16187 4.16310 4.18569 4.34304 4.40312
4.49731 4.54791 4.59191 4.64433 4.65625 4.69187 4.72969 4.81174
4.83310 4.85927 4.91337 4.94306 4.97162 5.00304 5.07481 5.09027
5.19446 5.21827 5.24708 5.25534 5.38093 5.44258 5.61317 5.72501
5.79020 5.80839 5.90099 6.30212 6.33425 6.59950 6.64467 7.23088
7.39042 7.90852 8.53789 9.33274
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.009788 B = 0.006069 C = 0.004971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2859.860396 B = 4612.739833 C = 5630.999134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.093 4.093
2 C 0.144 3.856
3 N -0.445 5.445
4 H 0.458 0.542
5 N -0.302 5.302
6 C 0.122 3.878
7 C -0.018 4.018
8 C -0.132 4.132
9 C -0.119 4.119
10 C -0.302 4.302
11 C 0.600 3.400
12 O -0.590 6.590
13 N -0.583 5.583
14 C 0.118 3.882
15 C -0.120 4.120
16 C -0.083 4.083
17 H 0.123 0.877
18 C -0.130 4.130
19 C 0.188 3.812
20 N -0.601 5.601
21 C -0.193 4.193
22 H 0.062 0.938
23 C -0.052 4.052
24 N -0.942 5.942
25 Si 0.935 3.065
26 H -0.286 1.286
27 H -0.293 1.293
28 H -0.290 1.290
29 C 0.142 3.858
30 H 0.028 0.972
31 C 0.116 3.884
32 H 0.091 0.909
33 H 0.084 0.916
34 H 0.117 0.883
35 H 0.050 0.950
36 H 0.077 0.923
37 H 0.055 0.945
38 H 0.036 0.964
39 H 0.072 0.928
40 H 0.054 0.946
41 H 0.051 0.949
42 H 0.077 0.923
43 H 0.103 0.897
44 H 0.096 0.904
45 H 0.037 0.963
46 H 0.067 0.933
47 H 0.079 0.921
48 H -0.003 1.003
49 H 0.010 0.990
50 H 0.241 0.759
51 H 0.097 0.903
52 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.488 16.244 9.240 22.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.010 3.990
3 N -0.154 5.154
4 H 0.307 0.693
5 N -0.125 5.125
6 C -0.045 4.045
7 C -0.039 4.039
8 C -0.190 4.190
9 C -0.177 4.177
10 C -0.317 4.317
11 C 0.388 3.612
12 O -0.471 6.471
13 N -0.314 5.314
14 C -0.004 4.004
15 C -0.158 4.158
16 C -0.102 4.102
17 H 0.141 0.859
18 C -0.169 4.169
19 C 0.063 3.937
20 N -0.325 5.325
21 C -0.323 4.323
22 H 0.080 0.920
23 C -0.245 4.245
24 N -0.593 5.593
25 Si 0.767 3.233
26 H -0.212 1.212
27 H -0.220 1.220
28 H -0.218 1.218
29 C 0.035 3.965
30 H 0.045 0.955
31 C -0.007 4.007
32 H 0.110 0.890
33 H 0.102 0.898
34 H 0.135 0.865
35 H 0.069 0.931
36 H 0.096 0.904
37 H 0.074 0.926
38 H 0.055 0.945
39 H 0.091 0.909
40 H 0.073 0.927
41 H 0.070 0.930
42 H 0.096 0.904
43 H 0.121 0.879
44 H 0.114 0.886
45 H 0.056 0.944
46 H 0.085 0.915
47 H 0.097 0.903
48 H 0.015 0.985
49 H 0.028 0.972
50 H 0.050 0.950
51 H 0.115 0.885
52 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -11.711 16.967 8.554 22.321
hybrid contribution 0.523 -1.178 -1.766 2.186
sum -11.189 15.789 6.789 20.508
Atomic orbital electron populations
1.20692 0.83581 1.05950 1.04893 1.21708 0.95760 0.85577 0.95966
1.45927 1.03031 1.08898 1.57551 0.69326 1.76954 0.97135 1.11495
1.26904 1.22096 0.93967 0.91350 0.97073 1.19499 0.90796 0.96000
0.97588 1.21698 0.99035 1.02383 0.95876 1.21598 0.98867 1.01853
0.95404 1.19894 0.93682 0.93353 1.24793 1.17544 0.75329 0.85373
0.82923 1.90725 1.53928 1.69252 1.33178 1.47863 1.65682 1.11790
1.06043 1.21685 1.00246 0.95791 0.82706 1.21720 0.98461 0.95017
1.00586 1.22417 0.97989 0.94314 0.95455 0.85942 1.23032 0.97247
1.00030 0.96555 1.20944 0.90569 0.96695 0.85471 1.44405 1.03724
1.83249 1.01169 1.19002 0.92524 1.38240 0.82528 0.92002 1.25071
0.96175 1.04149 0.99137 1.70115 0.99371 1.58256 1.31536 0.85613
0.77283 0.76834 0.83562 1.21209 1.22045 1.21772 1.21019 0.86959
0.95663 0.92890 0.95467 1.21314 0.97566 0.80993 1.00863 0.89025
0.89762 0.86458 0.93102 0.90377 0.92610 0.94478 0.90882 0.92696
0.92972 0.90422 0.87917 0.88599 0.94430 0.91464 0.90268 0.98477
0.97212 0.94971 0.88494 0.93024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.30 10.25 71.24 0.73 -0.57 16
2 C 0.14 3.30 7.29 42.14 0.31 3.61 16
3 N -0.45 -9.13 7.29 -46.80 -0.34 -9.47 16
4 H 0.46 5.19 8.96 -213.43 -1.91 3.28 16
5 N -0.30 -8.80 12.63 -46.67 -0.59 -9.39 16
6 C 0.12 4.20 5.74 43.52 0.25 4.45 16
7 C -0.02 -0.70 3.31 -11.54 -0.04 -0.74 16
8 C -0.13 -4.85 9.18 71.98 0.66 -4.19 16
9 C -0.12 -3.99 9.18 71.98 0.66 -3.33 16
10 C -0.30 -10.09 3.88 -20.15 -0.08 -10.16 16
11 C 0.60 23.86 6.57 86.66 0.57 24.43 16
12 O -0.59 -29.54 16.56 -4.04 -0.07 -29.60 16
13 N -0.58 -19.86 2.98 -827.86 -2.46 -22.32 16
14 C 0.12 2.96 6.32 86.04 0.54 3.51 16
15 C -0.12 -3.32 5.02 30.41 0.15 -3.17 16
16 C -0.08 -2.36 3.68 -9.38 -0.03 -2.39 16
17 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16
18 C -0.13 -4.35 6.33 32.15 0.20 -4.15 16
19 C 0.19 9.04 4.61 86.71 0.40 9.44 16
20 N -0.60 -29.89 3.20 -674.04 -2.15 -32.05 16
21 C -0.19 -11.19 9.70 84.03 0.81 -10.38 16
22 H 0.06 3.80 6.51 -2.91 -0.02 3.78 16
23 C -0.05 -3.14 5.49 84.86 0.47 -2.68 16
24 N -0.94 -57.83 10.38 21.65 0.22 -57.61 16
25 Si 0.94 50.69 29.55 68.60 2.03 52.72 16
26 H -0.29 -15.77 7.11 99.48 0.71 -15.07 16
27 H -0.29 -15.81 7.11 99.48 0.71 -15.10 16
28 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16
29 C 0.14 5.37 2.97 44.78 0.13 5.50 16
30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16
31 C 0.12 4.17 5.69 85.78 0.49 4.66 16
32 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16
33 H 0.08 1.30 7.96 -2.39 -0.02 1.28 16
34 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16
35 H 0.05 2.52 7.56 -2.39 -0.02 2.50 16
36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16
37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
40 H 0.05 1.79 7.84 -2.39 -0.02 1.77 16
41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
42 H 0.08 1.97 6.37 -2.39 -0.02 1.96 16
43 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
44 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
45 H 0.04 1.41 6.55 -2.39 -0.02 1.40 16
46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
47 H 0.08 2.34 7.97 -2.39 -0.02 2.32 16
48 H 0.00 -0.17 7.57 -2.38 -0.02 -0.19 16
49 H 0.01 0.53 7.04 -2.39 -0.02 0.51 16
50 H 0.24 14.59 8.31 -92.70 -0.77 13.82 16
51 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16
52 H 0.05 2.33 5.53 -2.39 -0.01 2.32 16
Total: -1.00 -82.20 403.15 1.88 -80.32
By element:
Atomic # 1 Polarization: 14.53 SS G_CDS: -0.99 Total: 13.55 kcal
Atomic # 6 Polarization: 7.62 SS G_CDS: 6.23 Total: 13.85 kcal
Atomic # 7 Polarization: -125.51 SS G_CDS: -5.32 Total: -130.83 kcal
Atomic # 8 Polarization: -29.54 SS G_CDS: -0.07 Total: -29.60 kcal
Atomic # 14 Polarization: 50.69 SS G_CDS: 2.03 Total: 52.72 kcal
Total: -82.20 1.88 -80.32 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042306432.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.632 kcal
(2) G-P(sol) polarization free energy of solvation -82.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.324 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds