Wall clock time and date at job start Wed Apr 1 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34257 * 126.29496 * 2 1 4 4 H 0.97007 * 125.75105 * 359.97438 * 3 2 1 5 5 N 1.39933 * 108.49216 * 180.24352 * 3 2 1 6 6 C 1.30445 * 108.89674 * 359.74866 * 5 3 2 7 7 C 1.50704 * 125.98548 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.46910 * 300.04304 * 7 6 5 9 9 C 1.52995 * 109.47221 * 60.04317 * 7 6 5 10 10 C 1.38046 * 126.28813 * 179.82183 * 2 1 3 11 11 C 1.47430 * 126.41631 * 0.02562 * 10 2 1 12 12 O 1.21601 * 119.99660 * 269.68882 * 11 10 2 13 13 N 1.34777 * 119.99769 * 89.68753 * 11 10 2 14 14 C 1.46593 * 119.75317 * 359.97438 * 13 11 10 15 15 C 1.53876 * 110.71224 * 132.28423 * 14 13 11 16 16 C 1.51978 * 107.28968 * 51.80778 * 15 14 13 17 17 H 1.08997 * 111.01902 * 56.50887 * 16 15 14 18 18 C 1.54021 * 115.05346 * 184.38597 * 16 15 14 19 19 C 1.55301 * 101.66872 * 153.34306 * 18 16 15 20 20 N 1.48152 * 107.21315 * 337.76805 * 19 18 16 21 21 C 1.36936 * 126.40180 * 174.89948 * 20 19 18 22 22 H 1.07993 * 120.00522 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99579 * 0.02725 * 21 20 19 24 24 N 1.31622 * 119.99866 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47416 * 89.99751 * 25 23 21 27 27 H 1.48496 * 109.47234 * 210.00301 * 25 23 21 28 28 H 1.48509 * 109.46911 * 329.99843 * 25 23 21 29 29 C 1.45513 * 107.20707 * 354.90415 * 20 19 18 30 30 H 1.09001 * 109.56977 * 274.13123 * 29 20 19 31 31 C 1.47797 * 119.74653 * 179.97438 * 13 11 10 32 32 H 1.09009 * 109.46897 * 270.18197 * 1 2 3 33 33 H 1.09002 * 109.47139 * 30.17376 * 1 2 3 34 34 H 1.09001 * 109.47524 * 150.18232 * 1 2 3 35 35 H 1.09003 * 109.46793 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47441 * 60.00138 * 8 7 6 37 37 H 1.09000 * 109.46501 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47125 * 299.99917 * 8 7 6 39 39 H 1.09002 * 109.46990 * 59.99702 * 9 7 6 40 40 H 1.09000 * 109.47131 * 179.97438 * 9 7 6 41 41 H 1.08990 * 109.47322 * 300.00149 * 9 7 6 42 42 H 1.09003 * 109.22585 * 252.60744 * 14 13 11 43 43 H 1.09010 * 109.22764 * 11.96241 * 14 13 11 44 44 H 1.09004 * 109.89655 * 171.25272 * 15 14 13 45 45 H 1.09005 * 109.89431 * 292.28232 * 15 14 13 46 46 H 1.09003 * 110.92776 * 35.31133 * 18 16 15 47 47 H 1.08994 * 111.12949 * 271.47242 * 18 16 15 48 48 H 1.09002 * 109.92135 * 218.31873 * 19 18 16 49 49 H 1.09002 * 109.92006 * 97.21591 * 19 18 16 50 50 H 0.97002 * 119.99558 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.06206 * 112.01299 * 31 13 11 52 52 H 1.08997 * 110.06909 * 350.45088 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 -0.0004 5 7 3.6340 0.6543 -0.0056 6 6 3.6590 -0.6499 -0.0036 7 6 4.8951 -1.5120 -0.0086 8 6 5.7200 -1.2134 -1.2621 9 6 5.7319 -1.2109 1.2363 10 6 2.3240 -1.1127 0.0035 11 6 1.8857 -2.5203 0.0073 12 8 1.7100 -3.0995 1.0620 13 7 1.6797 -3.1651 -1.1582 14 6 1.8926 -2.4614 -2.4264 15 6 2.7375 -3.3157 -3.3876 16 6 2.0813 -4.6840 -3.4716 17 1 1.0416 -4.6001 -3.7879 18 6 2.8461 -5.7238 -4.3118 19 6 2.3806 -7.0558 -3.6631 20 7 1.9138 -6.7368 -2.2937 21 6 1.3298 -7.6059 -1.4112 22 1 1.0271 -7.2608 -0.4337 23 6 1.1269 -8.9306 -1.7731 24 7 1.4955 -9.3511 -2.9646 25 14 0.3310 -10.1164 -0.5691 26 1 -1.1419 -10.0988 -0.7573 27 1 0.8448 -11.4882 -0.8125 28 1 0.6574 -9.7048 0.8200 29 6 2.1916 -5.3274 -2.0615 30 1 3.2133 -5.2115 -1.6999 31 6 1.2409 -4.5764 -1.1478 32 1 -0.3633 0.0033 1.0278 33 1 -0.3633 0.8884 -0.5165 34 1 -0.3634 -0.8916 -0.5110 35 1 4.6052 -2.5628 -0.0058 36 1 6.0098 -0.1627 -1.2647 37 1 6.6138 -1.8373 -1.2659 38 1 5.1237 -1.4280 -2.1490 39 1 5.1442 -1.4235 2.1293 40 1 6.6257 -1.8347 1.2329 41 1 6.0217 -0.1602 1.2338 42 1 0.9271 -2.2514 -2.8868 43 1 2.4093 -1.5213 -2.2329 44 1 2.7582 -2.8532 -4.3745 45 1 3.7527 -3.4130 -3.0027 46 1 3.9232 -5.5940 -4.2057 47 1 2.5506 -5.6762 -5.3599 48 1 3.2133 -7.7577 -3.6176 49 1 1.5639 -7.4858 -4.2431 50 1 1.3540 -10.2769 -3.2173 51 1 0.2210 -4.6537 -1.5247 52 1 1.2985 -4.9786 -0.1364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042306433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:11 Heat of formation + Delta-G solvation = 54.775239 kcal Electronic energy + Delta-G solvation = -32569.960409 eV Core-core repulsion = 28571.207524 eV Total energy + Delta-G solvation = -3998.752885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72326 -39.75494 -37.96587 -35.87966 -35.25697 -32.84352 -32.33362 -31.31566 -30.98964 -29.24909 -28.44925 -27.41138 -27.20371 -24.67000 -24.05943 -23.39775 -22.17547 -21.76724 -20.06305 -19.55405 -19.18880 -18.76545 -17.63420 -16.72962 -16.35879 -15.58173 -15.15033 -15.03801 -14.77022 -14.65316 -14.45147 -14.17411 -14.02311 -13.65410 -13.48976 -13.35137 -13.07983 -12.91126 -12.82577 -12.72294 -12.44452 -12.22879 -12.17433 -11.86444 -11.57428 -11.49289 -11.30726 -11.26279 -11.14500 -10.89650 -10.76426 -10.70790 -10.68401 -10.12783 -9.93154 -9.82706 -9.73406 -9.58852 -9.53689 -9.44587 -8.66206 -8.59374 -8.34514 -6.81895 -5.68586 -3.02058 1.52885 2.32929 2.50605 2.78360 3.32200 3.44008 3.49896 3.52184 4.21058 4.42589 4.54265 4.66875 4.85310 4.88317 4.99719 5.06626 5.08269 5.14712 5.16540 5.31207 5.39266 5.44560 5.55567 5.58378 5.58967 5.65024 5.67281 5.73753 5.76612 5.81277 5.82825 5.92465 5.97212 6.07211 6.10998 6.15635 6.16532 6.19316 6.23612 6.34184 6.42962 6.54338 6.60557 6.76716 6.81851 6.97191 7.10274 7.43686 7.58805 7.62409 7.68275 7.84744 8.26580 8.43808 9.22620 9.85642 10.52411 11.43703 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003321 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.650503 B = 8428.358674 C = 8794.144903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.124 3.876 3 N -0.466 5.466 4 H 0.440 0.560 5 N -0.290 5.290 6 C 0.127 3.873 7 C -0.020 4.020 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.269 4.269 11 C 0.592 3.408 12 O -0.536 6.536 13 N -0.597 5.597 14 C 0.114 3.886 15 C -0.119 4.119 16 C -0.112 4.112 17 H 0.076 0.924 18 C -0.137 4.137 19 C 0.177 3.823 20 N -0.592 5.592 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.922 5.922 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.157 3.843 30 H 0.024 0.976 31 C 0.117 3.883 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.037 0.963 49 H 0.055 0.945 50 H 0.252 0.748 51 H 0.070 0.930 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 22.612 -0.010 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.008 4.008 3 N -0.172 5.172 4 H 0.284 0.716 5 N -0.112 5.112 6 C -0.041 4.041 7 C -0.041 4.041 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.284 4.284 11 C 0.377 3.623 12 O -0.412 6.412 13 N -0.330 5.330 14 C -0.010 4.010 15 C -0.158 4.158 16 C -0.132 4.132 17 H 0.094 0.906 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.317 5.317 21 C -0.355 4.355 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.569 5.569 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.048 3.952 30 H 0.041 0.959 31 C -0.006 4.006 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.088 0.912 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.083 23.078 0.561 23.290 hybrid contribution -1.150 -0.851 0.502 1.516 sum 1.933 22.227 1.063 22.336 Atomic orbital electron populations 1.20557 0.86567 1.04339 1.04165 1.21328 0.94389 0.86726 0.98341 1.45965 1.04131 1.08097 1.59021 0.71616 1.77029 0.95496 1.12491 1.26153 1.22255 0.94054 0.91021 0.96738 1.19698 0.89857 0.97555 0.96945 1.21810 0.99605 1.02106 0.96349 1.21790 0.99448 1.02012 0.96635 1.19918 0.92986 0.93613 1.21849 1.17383 0.76686 0.84642 0.83558 1.90785 1.51523 1.67932 1.30974 1.48240 1.66421 1.13008 1.05351 1.21630 0.99759 0.95231 0.84338 1.21803 0.99368 0.96081 0.98505 1.22330 0.99535 0.93055 0.98312 0.90592 1.22767 0.98778 0.97725 0.98278 1.21531 0.98175 0.90566 0.84433 1.44167 1.71068 1.02920 1.13522 1.19051 1.31902 0.89650 0.94878 0.90248 1.24771 1.01375 0.97080 0.97023 1.69948 1.52325 1.15658 1.19003 0.86157 0.78960 0.80578 0.80370 1.21632 1.21734 1.20568 1.20972 0.95733 0.86034 0.92434 0.95851 1.21732 0.98142 0.77986 1.02701 0.89411 0.90480 0.89247 0.89256 0.92089 0.91750 0.92356 0.92405 0.91788 0.92122 0.92122 0.90461 0.91095 0.91369 0.92562 0.92276 0.94503 0.92662 0.93818 0.91166 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.25 36.01 0.37 -0.37 16 2 C 0.12 1.30 7.29 -81.60 -0.60 0.71 16 3 N -0.47 -4.32 7.29 33.86 0.25 -4.07 16 4 H 0.44 2.45 8.96 -182.72 -1.64 0.82 16 5 N -0.29 -3.47 12.63 33.90 0.43 -3.04 16 6 C 0.13 1.64 5.57 -82.02 -0.46 1.19 16 7 C -0.02 -0.24 3.31 -91.77 -0.30 -0.55 16 8 C -0.14 -1.42 9.18 37.16 0.34 -1.08 16 9 C -0.14 -1.54 9.18 37.15 0.34 -1.20 16 10 C -0.27 -3.66 3.83 -105.07 -0.40 -4.06 16 11 C 0.59 9.77 6.53 -12.52 -0.08 9.68 16 12 O -0.54 -11.00 16.47 5.28 0.09 -10.91 16 13 N -0.60 -9.31 3.01 -174.03 -0.52 -9.84 16 14 C 0.11 1.42 6.23 -3.54 -0.02 1.40 16 15 C -0.12 -1.54 5.72 -26.79 -0.15 -1.70 16 16 C -0.11 -1.88 2.61 -89.34 -0.23 -2.11 16 17 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 18 C -0.14 -2.47 6.58 -24.98 -0.16 -2.63 16 19 C 0.18 4.21 5.44 -1.91 -0.01 4.20 16 20 N -0.59 -14.80 3.35 -162.91 -0.55 -15.35 16 21 C -0.23 -6.25 9.88 -15.06 -0.15 -6.40 16 22 H 0.08 2.15 7.41 -52.49 -0.39 1.76 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -26.91 10.43 55.49 0.58 -26.33 16 25 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 29 C 0.16 3.20 2.77 -67.83 -0.19 3.01 16 30 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 31 C 0.12 2.20 5.68 -3.96 -0.02 2.18 16 32 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 35 H 0.09 1.24 7.56 -51.93 -0.39 0.84 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.90 6.12 -51.92 -0.32 0.58 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 46 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 49 H 0.06 1.45 7.19 -51.93 -0.37 1.08 16 50 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 51 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 52 H 0.09 1.98 6.75 -51.93 -0.35 1.63 16 LS Contribution 407.49 15.07 6.14 6.14 Total: -1.00 -33.53 407.49 -10.59 -44.13 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -10.16 Total: -0.01 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.83 Total: 1.99 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.18 Total: -58.63 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.53 -10.59 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042306433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.904 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds