Wall clock time and date at job start Wed Apr 1 2020 03:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34257 * 126.29496 * 2 1 4 4 H 0.97007 * 125.75105 * 359.97438 * 3 2 1 5 5 N 1.39933 * 108.49216 * 180.24352 * 3 2 1 6 6 C 1.30445 * 108.89674 * 359.74866 * 5 3 2 7 7 C 1.50704 * 125.98548 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.46910 * 300.04304 * 7 6 5 9 9 C 1.52995 * 109.47221 * 60.04317 * 7 6 5 10 10 C 1.38046 * 126.28813 * 179.82183 * 2 1 3 11 11 C 1.47430 * 126.41631 * 0.02562 * 10 2 1 12 12 O 1.21601 * 119.99660 * 269.68882 * 11 10 2 13 13 N 1.34777 * 119.99769 * 89.68753 * 11 10 2 14 14 C 1.46593 * 119.75317 * 359.97438 * 13 11 10 15 15 C 1.53876 * 110.71224 * 132.28423 * 14 13 11 16 16 C 1.51978 * 107.28968 * 51.80778 * 15 14 13 17 17 H 1.08997 * 111.01902 * 56.50887 * 16 15 14 18 18 C 1.54021 * 115.05346 * 184.38597 * 16 15 14 19 19 C 1.55301 * 101.66872 * 153.34306 * 18 16 15 20 20 N 1.48152 * 107.21315 * 337.76805 * 19 18 16 21 21 C 1.36936 * 126.40180 * 174.89948 * 20 19 18 22 22 H 1.07993 * 120.00522 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99579 * 0.02725 * 21 20 19 24 24 N 1.31622 * 119.99866 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47416 * 89.99751 * 25 23 21 27 27 H 1.48496 * 109.47234 * 210.00301 * 25 23 21 28 28 H 1.48509 * 109.46911 * 329.99843 * 25 23 21 29 29 C 1.45513 * 107.20707 * 354.90415 * 20 19 18 30 30 H 1.09001 * 109.56977 * 274.13123 * 29 20 19 31 31 C 1.47797 * 119.74653 * 179.97438 * 13 11 10 32 32 H 1.09009 * 109.46897 * 270.18197 * 1 2 3 33 33 H 1.09002 * 109.47139 * 30.17376 * 1 2 3 34 34 H 1.09001 * 109.47524 * 150.18232 * 1 2 3 35 35 H 1.09003 * 109.46793 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47441 * 60.00138 * 8 7 6 37 37 H 1.09000 * 109.46501 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47125 * 299.99917 * 8 7 6 39 39 H 1.09002 * 109.46990 * 59.99702 * 9 7 6 40 40 H 1.09000 * 109.47131 * 179.97438 * 9 7 6 41 41 H 1.08990 * 109.47322 * 300.00149 * 9 7 6 42 42 H 1.09003 * 109.22585 * 252.60744 * 14 13 11 43 43 H 1.09010 * 109.22764 * 11.96241 * 14 13 11 44 44 H 1.09004 * 109.89655 * 171.25272 * 15 14 13 45 45 H 1.09005 * 109.89431 * 292.28232 * 15 14 13 46 46 H 1.09003 * 110.92776 * 35.31133 * 18 16 15 47 47 H 1.08994 * 111.12949 * 271.47242 * 18 16 15 48 48 H 1.09002 * 109.92135 * 218.31873 * 19 18 16 49 49 H 1.09002 * 109.92006 * 97.21591 * 19 18 16 50 50 H 0.97002 * 119.99558 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.06206 * 112.01299 * 31 13 11 52 52 H 1.08997 * 110.06909 * 350.45088 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 -0.0004 5 7 3.6340 0.6543 -0.0056 6 6 3.6590 -0.6499 -0.0036 7 6 4.8951 -1.5120 -0.0086 8 6 5.7200 -1.2134 -1.2621 9 6 5.7319 -1.2109 1.2363 10 6 2.3240 -1.1127 0.0035 11 6 1.8857 -2.5203 0.0073 12 8 1.7100 -3.0995 1.0620 13 7 1.6797 -3.1651 -1.1582 14 6 1.8926 -2.4614 -2.4264 15 6 2.7375 -3.3157 -3.3876 16 6 2.0813 -4.6840 -3.4716 17 1 1.0416 -4.6001 -3.7879 18 6 2.8461 -5.7238 -4.3118 19 6 2.3806 -7.0558 -3.6631 20 7 1.9138 -6.7368 -2.2937 21 6 1.3298 -7.6059 -1.4112 22 1 1.0271 -7.2608 -0.4337 23 6 1.1269 -8.9306 -1.7731 24 7 1.4955 -9.3511 -2.9646 25 14 0.3310 -10.1164 -0.5691 26 1 -1.1419 -10.0988 -0.7573 27 1 0.8448 -11.4882 -0.8125 28 1 0.6574 -9.7048 0.8200 29 6 2.1916 -5.3274 -2.0615 30 1 3.2133 -5.2115 -1.6999 31 6 1.2409 -4.5764 -1.1478 32 1 -0.3633 0.0033 1.0278 33 1 -0.3633 0.8884 -0.5165 34 1 -0.3634 -0.8916 -0.5110 35 1 4.6052 -2.5628 -0.0058 36 1 6.0098 -0.1627 -1.2647 37 1 6.6138 -1.8373 -1.2659 38 1 5.1237 -1.4280 -2.1490 39 1 5.1442 -1.4235 2.1293 40 1 6.6257 -1.8347 1.2329 41 1 6.0217 -0.1602 1.2338 42 1 0.9271 -2.2514 -2.8868 43 1 2.4093 -1.5213 -2.2329 44 1 2.7582 -2.8532 -4.3745 45 1 3.7527 -3.4130 -3.0027 46 1 3.9232 -5.5940 -4.2057 47 1 2.5506 -5.6762 -5.3599 48 1 3.2133 -7.7577 -3.6176 49 1 1.5639 -7.4858 -4.2431 50 1 1.3540 -10.2769 -3.2173 51 1 0.2210 -4.6537 -1.5247 52 1 1.2985 -4.9786 -0.1364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042306433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:09 Heat of formation + Delta-G solvation = 33.450927 kcal Electronic energy + Delta-G solvation = -32570.885101 eV Core-core repulsion = 28571.207524 eV Total energy + Delta-G solvation = -3999.677577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.65733 -41.11266 -39.45621 -36.81202 -36.72573 -34.62629 -33.16894 -32.85734 -32.12663 -30.66068 -30.10165 -28.27541 -28.03335 -26.50758 -25.54096 -24.26591 -23.52509 -22.92943 -21.78733 -21.06883 -20.07785 -19.88196 -18.75264 -18.45174 -17.67897 -16.82982 -16.79569 -16.16280 -15.99302 -15.82362 -15.64565 -15.62869 -15.26411 -15.15207 -14.72254 -14.35684 -14.23895 -14.12026 -13.81475 -13.77400 -13.54349 -13.51516 -13.32409 -13.10855 -13.04659 -13.00672 -12.73805 -12.50391 -12.44920 -12.17471 -12.09321 -12.03184 -11.98074 -11.74760 -11.62999 -11.50874 -11.33470 -11.01861 -10.97742 -10.70781 -10.37872 -9.68737 -9.60305 -8.88502 -7.84579 -5.19116 0.68133 1.34493 1.44962 1.45967 1.51346 1.55178 1.73526 2.09700 2.50999 3.33723 3.34558 3.48180 3.58005 3.78723 3.88905 3.92879 4.01091 4.01928 4.16352 4.21110 4.29894 4.32186 4.33483 4.41233 4.48025 4.55256 4.60562 4.64725 4.76865 4.79773 4.84616 4.87745 4.92748 4.93423 4.94709 4.97394 5.00215 5.10220 5.13316 5.17547 5.24612 5.27600 5.34145 5.41440 5.45436 5.52823 5.63965 5.68881 5.80817 6.21160 6.28878 6.42211 6.58010 7.10198 7.15554 7.78622 8.45575 9.26280 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003321 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.650503 B = 8428.358674 C = 8794.144903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.146 3.854 3 N -0.446 5.446 4 H 0.458 0.542 5 N -0.299 5.299 6 C 0.121 3.879 7 C -0.024 4.024 8 C -0.133 4.133 9 C -0.137 4.137 10 C -0.304 4.304 11 C 0.595 3.405 12 O -0.588 6.588 13 N -0.592 5.592 14 C 0.112 3.888 15 C -0.110 4.110 16 C -0.095 4.095 17 H 0.077 0.923 18 C -0.121 4.121 19 C 0.181 3.819 20 N -0.612 5.612 21 C -0.236 4.236 22 H 0.075 0.925 23 C -0.060 4.060 24 N -0.948 5.948 25 Si 0.970 3.030 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.150 3.850 30 H 0.007 0.993 31 C 0.130 3.870 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.086 0.914 48 H -0.002 1.002 49 H 0.023 0.977 50 H 0.247 0.753 51 H 0.070 0.930 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 26.290 -1.188 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.012 3.988 3 N -0.154 5.154 4 H 0.307 0.693 5 N -0.121 5.121 6 C -0.046 4.046 7 C -0.044 4.044 8 C -0.191 4.191 9 C -0.194 4.194 10 C -0.319 4.319 11 C 0.383 3.617 12 O -0.469 6.469 13 N -0.323 5.323 14 C -0.009 4.009 15 C -0.148 4.148 16 C -0.114 4.114 17 H 0.096 0.904 18 C -0.159 4.159 19 C 0.056 3.944 20 N -0.337 5.337 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.254 4.254 24 N -0.597 5.597 25 Si 0.799 3.201 26 H -0.210 1.210 27 H -0.219 1.219 28 H -0.201 1.201 29 C 0.042 3.958 30 H 0.024 0.976 31 C 0.006 3.994 32 H 0.111 0.889 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.016 0.984 49 H 0.042 0.958 50 H 0.056 0.944 51 H 0.088 0.912 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.828 26.840 -0.642 26.997 hybrid contribution -1.068 -1.944 0.922 2.402 sum 1.761 24.897 0.280 24.960 Atomic orbital electron populations 1.20703 0.84305 1.05746 1.04912 1.21631 0.95520 0.85933 0.95715 1.45964 1.03168 1.08884 1.57402 0.69340 1.76986 0.96838 1.11742 1.26515 1.22297 0.93908 0.91424 0.96990 1.19700 0.90338 0.95981 0.98410 1.21760 0.99544 1.02640 0.95173 1.21758 0.99475 1.02739 0.95465 1.19733 0.94093 0.92458 1.25631 1.17809 0.75388 0.85698 0.82763 1.90750 1.53811 1.69409 1.32879 1.48249 1.65796 1.11495 1.06798 1.21881 1.01208 0.95272 0.82562 1.21792 0.98705 0.93571 1.00713 1.22242 1.00023 0.94617 0.94553 0.90416 1.22642 0.99638 0.94255 0.99358 1.21351 0.95636 0.93209 0.84163 1.44428 1.70737 1.04860 1.13714 1.19306 1.31372 0.90491 0.95312 0.90739 1.25522 1.02531 0.98602 0.98706 1.70150 1.53584 1.15482 1.20450 0.85204 0.78173 0.78243 0.78525 1.20953 1.21877 1.20140 1.21096 0.94831 0.84336 0.95575 0.97554 1.21313 0.97832 0.80032 1.00201 0.88931 0.86613 0.90255 0.92003 0.91431 0.90890 0.92202 0.94165 0.90562 0.91292 0.89805 0.88709 0.87130 0.91632 0.91238 0.89511 0.98354 0.95836 0.94402 0.91195 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.25 71.24 0.73 -0.44 16 2 C 0.15 2.66 7.29 42.14 0.31 2.97 16 3 N -0.45 -6.77 7.29 -46.79 -0.34 -7.11 16 4 H 0.46 3.23 8.96 -213.42 -1.91 1.32 16 5 N -0.30 -6.40 12.63 -46.68 -0.59 -6.99 16 6 C 0.12 2.97 5.57 43.52 0.24 3.21 16 7 C -0.02 -0.56 3.31 -11.54 -0.04 -0.60 16 8 C -0.13 -2.44 9.18 71.98 0.66 -1.78 16 9 C -0.14 -2.92 9.18 71.98 0.66 -2.26 16 10 C -0.30 -7.90 3.83 -20.15 -0.08 -7.98 16 11 C 0.60 19.85 6.53 86.66 0.57 20.42 16 12 O -0.59 -25.36 16.47 -4.04 -0.07 -25.43 16 13 N -0.59 -18.22 3.01 -822.76 -2.48 -20.70 16 14 C 0.11 2.47 6.23 86.66 0.54 3.01 16 15 C -0.11 -2.45 5.72 30.55 0.17 -2.28 16 16 C -0.09 -3.00 2.61 -9.96 -0.03 -3.02 16 17 H 0.08 2.48 8.13 -2.39 -0.02 2.47 16 18 C -0.12 -4.18 6.58 31.73 0.21 -3.97 16 19 C 0.18 8.91 5.44 86.85 0.47 9.38 16 20 N -0.61 -31.86 3.35 -669.34 -2.24 -34.11 16 21 C -0.24 -13.58 9.88 84.03 0.83 -12.75 16 22 H 0.07 4.25 7.41 -2.91 -0.02 4.22 16 23 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 24 N -0.95 -57.61 10.43 21.65 0.23 -57.38 16 25 Si 0.97 47.34 29.55 68.60 2.03 49.36 16 26 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 29 C 0.15 6.21 2.77 45.59 0.13 6.34 16 30 H 0.01 0.31 7.90 -2.39 -0.02 0.29 16 31 C 0.13 5.06 5.68 85.72 0.49 5.54 16 32 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 35 H 0.06 1.78 7.56 -2.39 -0.02 1.76 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.09 1.85 6.12 -2.38 -0.01 1.84 16 44 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.06 1.56 7.97 -2.38 -0.02 1.54 16 46 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 47 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.00 -0.10 7.77 -2.39 -0.02 -0.12 16 49 H 0.02 1.28 7.19 -2.39 -0.02 1.27 16 50 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 52 H 0.06 2.61 6.75 -2.39 -0.02 2.59 16 Total: -1.00 -78.79 407.49 1.87 -76.92 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -1.00 Total: 12.70 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.33 Total: 12.73 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -5.42 Total: -126.28 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.07 Total: -25.43 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -78.79 1.87 -76.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042306433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.369 kcal (2) G-P(sol) polarization free energy of solvation -78.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds