Wall clock time and date at job start Wed Apr 1 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30833 * 125.90223 * 2 1 4 4 N 1.40087 * 108.20406 * 180.25429 * 3 2 1 5 5 H 0.97000 * 126.03371 * 179.73838 * 4 3 2 6 6 C 1.34946 * 107.92695 * 359.71733 * 4 3 2 7 7 C 1.50695 * 126.12650 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74581 * 0.02562 * 6 4 3 9 9 C 1.50696 * 126.04070 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47438 * 89.99486 * 9 8 6 11 11 C 1.50704 * 109.47095 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00115 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99624 * 179.97438 * 11 10 9 14 14 C 1.46591 * 119.75653 * 0.02562 * 13 11 10 15 15 C 1.53889 * 110.71110 * 132.25397 * 14 13 11 16 16 C 1.51978 * 107.29215 * 51.81181 * 15 14 13 17 17 H 1.09001 * 111.01500 * 56.52194 * 16 15 14 18 18 C 1.53697 * 115.00834 * 183.73980 * 16 15 14 19 19 C 1.56476 * 101.35911 * 153.19698 * 18 16 15 20 20 N 1.48158 * 107.29036 * 338.38193 * 19 18 16 21 21 C 1.36937 * 126.39154 * 174.53378 * 20 19 18 22 22 H 1.08007 * 119.99435 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00589 * 0.02562 * 21 20 19 24 24 N 1.31624 * 119.99637 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00198 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47124 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46873 * 120.00125 * 25 23 21 28 28 H 1.48499 * 109.47075 * 239.99916 * 25 23 21 29 29 C 1.45499 * 107.20446 * 354.54045 * 20 19 18 30 30 H 1.08997 * 108.99054 * 273.63687 * 29 20 19 31 31 C 1.47800 * 119.75033 * 179.97438 * 13 11 10 32 32 H 1.08999 * 109.47483 * 270.21167 * 1 2 3 33 33 H 1.08997 * 109.47080 * 30.21475 * 1 2 3 34 34 H 1.09001 * 109.47188 * 150.21122 * 1 2 3 35 35 H 1.08993 * 109.47716 * 270.02943 * 7 6 4 36 36 H 1.09005 * 109.47313 * 30.03520 * 7 6 4 37 37 H 1.09002 * 109.47264 * 150.02609 * 7 6 4 38 38 H 1.08999 * 109.46857 * 329.99296 * 9 8 6 39 39 H 1.09004 * 109.47208 * 209.99606 * 9 8 6 40 40 H 1.08999 * 109.47252 * 60.00051 * 10 9 8 41 41 H 1.09003 * 109.46726 * 299.99515 * 10 9 8 42 42 H 1.09003 * 109.23096 * 252.57121 * 14 13 11 43 43 H 1.09000 * 109.23215 * 11.97890 * 14 13 11 44 44 H 1.08994 * 109.89922 * 171.25912 * 15 14 13 45 45 H 1.09004 * 109.89126 * 292.29807 * 15 14 13 46 46 H 1.08997 * 110.96074 * 271.60148 * 18 16 15 47 47 H 1.08997 * 110.96250 * 35.34079 * 18 16 15 48 48 H 1.08996 * 110.17579 * 218.74221 * 19 18 16 49 49 H 1.09000 * 109.58063 * 97.69287 * 19 18 16 50 50 H 0.97001 * 119.99849 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.06444 * 350.47556 * 31 13 11 52 52 H 1.09003 * 110.06498 * 111.93248 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6339 -0.0059 5 1 4.3908 1.2077 -0.0108 6 6 3.6141 -0.7155 -0.0031 7 6 4.8349 -1.5991 -0.0080 8 6 2.3271 -1.1331 0.0038 9 6 1.8598 -2.5658 0.0095 10 6 1.7082 -3.0471 1.4539 11 6 1.2415 -4.4800 1.4595 12 8 1.0486 -5.0591 0.4115 13 7 1.0385 -5.1180 2.6292 14 6 1.2728 -4.4127 3.8928 15 6 0.0903 -4.6152 4.8565 16 6 -0.1651 -6.1105 4.9502 17 1 0.7320 -6.6410 5.2693 18 6 -1.3781 -6.5101 5.8054 19 6 -1.7767 -7.8765 5.1553 20 7 -1.2133 -7.8933 3.7852 21 6 -1.2388 -8.9454 2.9091 22 1 -0.7944 -8.8436 1.9299 23 6 -1.8364 -10.1424 3.2790 24 7 -2.3783 -10.2663 4.4721 25 14 -1.8717 -11.5774 2.0836 26 1 -1.1997 -11.1847 0.8189 27 1 -1.1623 -12.7370 2.6812 28 1 -3.2807 -11.9513 1.8006 29 6 -0.6279 -6.5832 3.5445 30 1 -1.4017 -5.9119 3.1721 31 6 0.5802 -6.5231 2.6284 32 1 -0.3634 0.0038 1.0276 33 1 -0.3633 0.8880 -0.5172 34 1 -0.3633 -0.8919 -0.5106 35 1 5.1239 -1.8139 -1.0367 36 1 5.6537 -1.0904 0.5008 37 1 4.6101 -2.5322 0.5086 38 1 2.5909 -3.1884 -0.5062 39 1 0.8986 -2.6365 -0.4998 40 1 0.9772 -2.4245 1.9695 41 1 2.6694 -2.9765 1.9631 42 1 2.1823 -4.7966 4.3549 43 1 1.3937 -3.3481 3.6927 44 1 0.3416 -4.2196 5.8405 45 1 -0.7947 -4.1104 4.4689 46 1 -1.0944 -6.6344 6.8504 47 1 -2.1827 -5.7817 5.7053 48 1 -2.8618 -7.9697 5.1118 49 1 -1.3570 -8.6953 5.7397 50 1 -2.7957 -11.1028 4.7307 51 1 0.2994 -6.8243 1.6191 52 1 1.3686 -7.1739 3.0067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042347936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:14 Heat of formation + Delta-G solvation = 30.225956 kcal Electronic energy + Delta-G solvation = -31116.695197 eV Core-core repulsion = 27116.877775 eV Total energy + Delta-G solvation = -3999.817422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.31728 -41.37678 -39.66468 -36.78703 -35.18553 -34.62136 -34.24830 -32.86390 -31.74630 -30.60501 -30.08622 -28.78910 -27.93606 -26.53090 -25.75045 -24.11148 -23.48544 -21.82084 -21.22738 -21.03542 -20.19658 -19.82789 -18.67271 -18.29053 -17.72519 -16.89867 -16.79089 -16.56700 -16.04848 -15.83237 -15.61838 -15.27208 -15.10098 -14.74275 -14.44690 -14.32036 -14.11670 -13.95626 -13.89058 -13.68639 -13.50098 -13.43016 -13.24225 -13.17481 -13.09845 -13.01096 -12.84816 -12.74877 -12.66853 -12.42562 -12.07689 -11.97966 -11.90141 -11.75474 -11.50819 -11.35476 -11.28864 -10.99231 -10.74044 -10.72674 -10.16066 -9.60463 -9.27766 -8.89769 -7.86369 -5.20970 0.92744 1.43470 1.44071 1.54844 1.69597 1.72684 2.00343 2.09014 2.49546 3.31980 3.50193 3.61840 3.78366 3.82217 3.90682 3.98879 4.01086 4.15405 4.20738 4.30433 4.32285 4.34849 4.38005 4.53179 4.59569 4.63983 4.66613 4.74120 4.75236 4.79411 4.81662 4.83355 4.90356 4.97714 4.97791 5.06692 5.14827 5.16557 5.19168 5.23565 5.27684 5.29869 5.39070 5.42020 5.54408 5.65862 5.67621 5.78292 5.79215 6.19869 6.48586 6.53212 6.78089 7.08612 7.27075 7.77276 8.44270 9.24753 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002406 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.119845 B =11637.136687 C =12334.118103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.075 3.925 3 N -0.331 5.331 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.095 4.095 8 C -0.250 4.250 9 C -0.016 4.016 10 C -0.116 4.116 11 C 0.504 3.496 12 O -0.592 6.592 13 N -0.607 5.607 14 C 0.103 3.897 15 C -0.112 4.112 16 C -0.096 4.096 17 H 0.074 0.926 18 C -0.122 4.122 19 C 0.179 3.821 20 N -0.615 5.615 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.064 4.064 24 N -0.949 5.949 25 Si 0.971 3.029 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.292 1.292 29 C 0.148 3.852 30 H 0.007 0.993 31 C 0.129 3.871 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.070 0.930 48 H -0.001 1.001 49 H 0.021 0.979 50 H 0.247 0.753 51 H 0.054 0.946 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 24.082 -1.546 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 N -0.155 5.155 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.055 4.055 10 C -0.156 4.156 11 C 0.294 3.706 12 O -0.473 6.473 13 N -0.340 5.340 14 C -0.018 4.018 15 C -0.151 4.151 16 C -0.116 4.116 17 H 0.092 0.908 18 C -0.160 4.160 19 C 0.055 3.945 20 N -0.340 5.340 21 C -0.362 4.362 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.800 3.200 26 H -0.195 1.195 27 H -0.215 1.215 28 H -0.219 1.219 29 C 0.040 3.960 30 H 0.025 0.975 31 C 0.005 3.995 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.017 0.983 49 H 0.040 0.960 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.085 24.852 -2.100 29.148 hybrid contribution -0.311 -2.096 -0.728 2.240 sum 14.774 22.756 -2.827 27.278 Atomic orbital electron populations 1.20290 0.85838 1.03615 1.03957 1.22580 0.97827 0.90318 0.98353 1.77233 0.87647 1.23137 1.27531 1.46178 1.07084 1.05207 1.59720 0.70522 1.21323 0.97549 0.84998 0.98949 1.20621 0.92071 0.98187 1.04477 1.19727 0.91815 0.95730 1.18892 1.19433 1.01467 0.89718 0.94883 1.21689 1.04510 0.89523 0.99874 1.21586 0.76382 0.90130 0.82484 1.90680 1.53886 1.69705 1.33019 1.48400 1.66097 1.12050 1.07468 1.22072 0.98504 0.98502 0.82733 1.21820 0.98667 0.93475 1.01090 1.22182 0.97745 0.97331 0.94309 0.90810 1.22784 0.97669 0.96305 0.99248 1.21568 0.94620 0.94157 0.84200 1.44452 1.65976 1.09787 1.13753 1.19342 1.30874 0.90690 0.95325 0.90734 1.25558 1.00969 1.00419 0.98742 1.70160 1.43849 1.25555 1.20282 0.85109 0.76999 0.79443 0.78458 1.19544 1.21499 1.21904 1.21130 0.92363 0.86787 0.95690 0.97543 1.21208 0.96080 0.82365 0.99846 0.89214 0.90720 0.90101 0.89304 0.88784 0.89094 0.91448 0.92102 0.87103 0.86461 0.89932 0.86359 0.87027 0.91495 0.89544 0.91175 0.98315 0.96047 0.94392 0.92754 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.26 71.23 0.73 -0.50 16 2 C 0.08 1.48 7.22 43.10 0.31 1.79 16 3 N -0.33 -6.92 12.70 -47.39 -0.60 -7.52 16 4 N -0.47 -6.95 7.36 -48.01 -0.35 -7.30 16 5 H 0.45 3.69 8.96 -213.33 -1.91 1.77 16 6 C 0.10 1.44 7.21 41.40 0.30 1.74 16 7 C -0.10 -0.72 10.04 71.23 0.71 -0.01 16 8 C -0.25 -4.51 5.35 -20.14 -0.11 -4.61 16 9 C -0.02 -0.31 4.41 29.85 0.13 -0.18 16 10 C -0.12 -2.01 4.01 29.85 0.12 -1.89 16 11 C 0.50 14.14 7.67 87.66 0.67 14.81 16 12 O -0.59 -22.60 15.35 -3.02 -0.05 -22.65 16 13 N -0.61 -16.91 3.01 -818.89 -2.47 -19.38 16 14 C 0.10 1.84 6.22 86.66 0.54 2.37 16 15 C -0.11 -2.26 5.73 30.56 0.17 -2.08 16 16 C -0.10 -2.98 2.57 -10.08 -0.03 -3.01 16 17 H 0.07 2.35 8.13 -2.39 -0.02 2.34 16 18 C -0.12 -4.19 6.64 32.04 0.21 -3.97 16 19 C 0.18 8.87 5.49 87.27 0.48 9.35 16 20 N -0.61 -32.10 3.35 -667.07 -2.23 -34.33 16 21 C -0.23 -13.48 9.88 84.03 0.83 -12.65 16 22 H 0.07 4.27 7.41 -2.91 -0.02 4.25 16 23 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16 24 N -0.95 -58.10 10.43 21.65 0.23 -57.87 16 25 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 C 0.15 6.09 2.77 45.58 0.13 6.22 16 30 H 0.01 0.31 7.95 -2.39 -0.02 0.30 16 31 C 0.13 4.93 5.68 85.71 0.49 5.42 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.25 7.25 -2.39 -0.02 1.23 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 37 H 0.09 0.70 7.77 -2.39 -0.02 0.68 16 38 H 0.07 1.40 7.73 -2.39 -0.02 1.38 16 39 H 0.06 1.39 7.21 -2.38 -0.02 1.37 16 40 H 0.11 1.56 7.55 -2.39 -0.02 1.54 16 41 H 0.12 1.39 7.99 -2.39 -0.02 1.37 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 1.27 5.85 -2.39 -0.01 1.26 16 44 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.42 8.00 -2.38 -0.02 1.40 16 46 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.07 2.22 8.12 -2.39 -0.02 2.21 16 48 H 0.00 -0.08 7.77 -2.39 -0.02 -0.10 16 49 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 51 H 0.05 2.46 6.76 -2.39 -0.02 2.45 16 52 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -81.25 404.78 1.72 -79.53 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -0.99 Total: 10.46 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.16 Total: 9.52 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.43 Total: -126.40 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -81.25 1.72 -79.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042347936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.758 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds