Wall clock time and date at job start Wed Apr 1 2020 03:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30837 * 125.89473 * 2 1 4 4 N 1.40089 * 108.20471 * 180.26007 * 3 2 1 5 5 H 0.97001 * 126.03672 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92269 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.12392 * 179.97438 * 6 4 3 8 8 C 1.35313 * 107.74794 * 0.02562 * 6 4 3 9 9 C 1.50697 * 126.04149 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47123 * 269.99737 * 9 8 6 11 11 C 1.50703 * 109.46747 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00174 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99383 * 180.02562 * 11 10 9 14 14 C 1.47156 * 121.22307 * 0.02562 * 13 11 10 15 15 C 1.52833 * 107.98135 * 122.70138 * 14 13 11 16 16 C 1.53089 * 110.58237 * 57.33679 * 15 14 13 17 17 H 1.08998 * 112.48933 * 71.39906 * 16 15 14 18 18 C 1.56031 * 106.38783 * 195.44924 * 16 15 14 19 19 C 1.54498 * 102.61360 * 78.38785 * 18 16 15 20 20 N 1.47426 * 107.14793 * 22.85222 * 19 18 16 21 21 C 1.36937 * 126.06212 * 181.65015 * 20 19 18 22 22 H 1.08000 * 120.00641 * 174.17023 * 21 20 19 23 23 C 1.38818 * 119.99859 * 354.16967 * 21 20 19 24 24 N 1.31618 * 119.99970 * 6.71027 * 23 21 20 25 25 Si 1.86804 * 119.99946 * 186.71209 * 23 21 20 26 26 H 1.48501 * 109.46659 * 94.98563 * 25 23 21 27 27 H 1.48495 * 109.47056 * 214.98139 * 25 23 21 28 28 H 1.48500 * 109.47155 * 334.98382 * 25 23 21 29 29 C 1.46470 * 107.88094 * 1.61159 * 20 19 18 30 30 H 1.08996 * 108.42371 * 89.91225 * 29 20 19 31 31 C 1.46758 * 121.21878 * 179.72138 * 13 11 10 32 32 H 1.09000 * 109.47147 * 269.69489 * 1 2 3 33 33 H 1.08999 * 109.46700 * 29.70014 * 1 2 3 34 34 H 1.09000 * 109.46538 * 149.69335 * 1 2 3 35 35 H 1.09005 * 109.46670 * 270.04522 * 7 6 4 36 36 H 1.08996 * 109.47360 * 30.04320 * 7 6 4 37 37 H 1.09002 * 109.47063 * 150.04683 * 7 6 4 38 38 H 1.08997 * 109.47089 * 30.00155 * 9 8 6 39 39 H 1.08994 * 109.47410 * 150.00027 * 9 8 6 40 40 H 1.08992 * 109.47048 * 300.00002 * 10 9 8 41 41 H 1.09006 * 109.46472 * 60.00185 * 10 9 8 42 42 H 1.09001 * 109.75580 * 242.32048 * 14 13 11 43 43 H 1.08999 * 109.75786 * 3.02413 * 14 13 11 44 44 H 1.08995 * 109.25446 * 177.62726 * 15 14 13 45 45 H 1.09006 * 109.25215 * 297.09302 * 15 14 13 46 46 H 1.09004 * 110.78565 * 196.67050 * 18 16 15 47 47 H 1.09002 * 110.78091 * 319.91845 * 18 16 15 48 48 H 1.08997 * 109.90636 * 142.23180 * 19 18 16 49 49 H 1.09005 * 109.90735 * 263.28851 * 19 18 16 50 50 H 0.96993 * 120.00166 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.22625 * 352.86282 * 31 13 11 52 52 H 1.08999 * 109.22769 * 112.22364 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 1 4.3908 1.2081 -0.0070 6 6 3.6143 -0.7153 -0.0091 7 6 4.8351 -1.5988 -0.0163 8 6 2.3272 -1.1330 -0.0057 9 6 1.8600 -2.5657 -0.0079 10 6 1.6968 -3.0467 -1.4511 11 6 1.2302 -4.4797 -1.4532 12 8 1.0458 -5.0590 -0.4038 13 7 1.0177 -5.1174 -2.6214 14 6 1.2334 -4.4406 -3.9102 15 6 2.2510 -5.2563 -4.7070 16 6 1.7602 -6.6943 -4.8940 17 1 0.9266 -6.7628 -5.5928 18 6 2.9998 -7.5273 -5.3458 19 6 3.7585 -7.7502 -4.0185 20 7 2.7773 -7.6070 -2.9276 21 6 3.0430 -7.6977 -1.5873 22 1 2.2672 -7.4834 -0.8672 23 6 4.3096 -8.0652 -1.1542 24 7 5.2894 -8.1978 -2.0229 25 14 4.6234 -8.3716 0.6616 26 1 4.4909 -9.8225 0.9488 27 1 5.9950 -7.9214 1.0098 28 1 3.6339 -7.6146 1.4696 29 6 1.4679 -7.3495 -3.5314 30 1 0.9758 -8.3060 -3.7076 31 6 0.5691 -6.5144 -2.6549 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3633 0.8927 -0.5092 34 1 -0.3632 -0.8872 -0.5186 35 1 5.1255 -1.8088 -1.0457 36 1 5.6532 -1.0923 0.4959 37 1 4.6096 -2.5343 0.4957 38 1 2.5953 -3.1884 0.5018 39 1 0.9031 -2.6367 0.5091 40 1 0.9615 -2.4241 -1.9606 41 1 2.6538 -2.9758 -1.9681 42 1 0.2935 -4.3861 -4.4595 43 1 1.6187 -3.4355 -3.7386 44 1 2.3949 -4.7956 -5.6843 45 1 3.2006 -5.2679 -4.1718 46 1 2.6898 -8.4785 -5.7785 47 1 3.6083 -6.9629 -6.0524 48 1 4.1894 -8.7512 -4.0009 49 1 4.5471 -7.0052 -3.9121 50 1 6.1744 -8.4549 -1.7204 51 1 0.5802 -6.9192 -1.6429 52 1 -0.4474 -6.5557 -3.0462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042347939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:28 Heat of formation + Delta-G solvation = 53.370788 kcal Electronic energy + Delta-G solvation = -32367.511772 eV Core-core repulsion = 28368.697985 eV Total energy + Delta-G solvation = -3998.813787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.41924 -39.89735 -38.07268 -34.92187 -34.09991 -33.40162 -32.78836 -31.26195 -30.44554 -29.12001 -28.35911 -27.93963 -27.02889 -24.72314 -24.39480 -22.93269 -22.46848 -20.21390 -19.96720 -19.57661 -19.12964 -18.11939 -17.36394 -16.56094 -16.48715 -15.49114 -15.25603 -15.03684 -14.80994 -14.35403 -14.04752 -13.91278 -13.69515 -13.53017 -13.38563 -13.25013 -12.93616 -12.70363 -12.64282 -12.48358 -12.33661 -12.24152 -11.98126 -11.91972 -11.69365 -11.53208 -11.32370 -11.20577 -10.92048 -10.86722 -10.75392 -10.67356 -10.40979 -10.06818 -9.82708 -9.77776 -9.63125 -9.46584 -9.29720 -9.16303 -8.49062 -8.34582 -8.03123 -6.73065 -5.62718 -2.93363 1.79636 2.64519 2.78312 3.23022 3.48010 3.54036 3.58386 3.60633 4.58339 4.60329 4.62169 4.91315 4.98690 5.09995 5.16112 5.20872 5.31347 5.34319 5.38390 5.46230 5.53808 5.54252 5.56506 5.58495 5.69143 5.72135 5.74467 5.78281 5.83282 5.86124 5.92554 6.01922 6.06178 6.12609 6.17207 6.30596 6.32487 6.35878 6.40763 6.47637 6.52020 6.65860 6.69538 6.79313 6.97168 7.16641 7.22611 7.62290 7.64396 7.69251 7.94965 8.00974 8.32910 8.80217 9.32258 9.93192 10.58261 11.50145 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.003861 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.418102 B = 7250.352913 C = 8462.813979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.302 5.302 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.094 3.906 7 C -0.098 4.098 8 C -0.230 4.230 9 C -0.024 4.024 10 C -0.128 4.128 11 C 0.520 3.480 12 O -0.537 6.537 13 N -0.597 5.597 14 C 0.112 3.888 15 C -0.123 4.123 16 C -0.101 4.101 17 H 0.075 0.925 18 C -0.144 4.144 19 C 0.179 3.821 20 N -0.588 5.588 21 C -0.212 4.212 22 H 0.084 0.916 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.294 1.294 28 H -0.277 1.277 29 C 0.154 3.846 30 H 0.026 0.974 31 C 0.113 3.887 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.041 0.959 50 H 0.248 0.752 51 H 0.095 0.905 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 14.844 -3.950 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 N -0.126 5.126 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.034 4.034 7 C -0.157 4.157 8 C -0.241 4.241 9 C -0.063 4.063 10 C -0.168 4.168 11 C 0.308 3.692 12 O -0.414 6.414 13 N -0.330 5.330 14 C -0.012 4.012 15 C -0.161 4.161 16 C -0.121 4.121 17 H 0.093 0.907 18 C -0.183 4.183 19 C 0.054 3.946 20 N -0.313 5.313 21 C -0.340 4.340 22 H 0.102 0.898 23 C -0.203 4.203 24 N -0.574 5.574 25 Si 0.731 3.269 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.202 1.202 29 C 0.046 3.954 30 H 0.043 0.957 31 C -0.011 4.011 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.113 0.887 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.301 15.746 -3.209 17.261 hybrid contribution 0.967 -0.730 0.705 1.402 sum -5.334 15.016 -2.504 16.131 Atomic orbital electron populations 1.20199 0.86833 1.03253 1.03065 1.22232 0.96871 0.90259 0.98907 1.77230 0.86559 1.22416 1.26379 1.46123 1.07171 1.04878 1.60670 0.72099 1.20968 0.97196 0.84723 1.00515 1.20542 0.92504 0.98701 1.03909 1.19777 0.91088 0.96412 1.16807 1.19595 1.02421 0.89230 0.95053 1.21619 1.02697 0.93267 0.99262 1.20438 0.77053 0.88456 0.83242 1.90677 1.51675 1.68156 1.30904 1.47838 1.67101 1.12748 1.05303 1.21624 0.98817 0.96012 0.84719 1.21833 1.00096 0.95020 0.99184 1.22358 0.97584 0.94755 0.97371 0.90716 1.23167 0.96970 0.98489 0.99632 1.21200 0.90522 1.00315 0.82566 1.44298 1.01586 1.83354 1.02107 1.19111 0.96200 1.37923 0.80804 0.89830 1.24704 0.96006 1.02246 0.97341 1.69973 1.00907 1.54620 1.31856 0.86228 0.77142 0.77999 0.85497 1.21887 1.22089 1.20190 1.20585 0.89078 0.94848 0.90898 0.95723 1.21279 0.95518 0.81008 1.03268 0.90495 0.91049 0.90221 0.89781 0.91240 0.88909 0.90416 0.90613 0.89785 0.89388 0.92001 0.90492 0.92198 0.90185 0.92798 0.92392 0.93963 0.94129 0.94141 0.88686 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.12 36.01 0.36 -0.35 16 2 C 0.08 1.05 7.22 -82.40 -0.59 0.46 16 3 N -0.30 -3.99 12.70 33.67 0.43 -3.56 16 4 N -0.48 -5.32 7.36 33.48 0.25 -5.08 16 5 H 0.44 3.43 8.96 -182.60 -1.64 1.79 16 6 C 0.09 1.11 7.21 -82.26 -0.59 0.52 16 7 C -0.10 -0.99 10.22 36.01 0.37 -0.62 16 8 C -0.23 -2.96 5.35 -105.06 -0.56 -3.52 16 9 C -0.02 -0.33 4.45 -27.88 -0.12 -0.46 16 10 C -0.13 -1.76 4.05 -27.88 -0.11 -1.87 16 11 C 0.52 9.28 7.72 -10.98 -0.08 9.20 16 12 O -0.54 -11.75 15.44 5.56 0.09 -11.66 16 13 N -0.60 -10.04 2.98 -174.37 -0.52 -10.56 16 14 C 0.11 1.47 6.36 -3.77 -0.02 1.45 16 15 C -0.12 -1.82 5.04 -26.77 -0.14 -1.96 16 16 C -0.10 -1.62 3.68 -88.43 -0.33 -1.95 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.14 -2.56 6.32 -24.32 -0.15 -2.71 16 19 C 0.18 4.18 4.61 -2.75 -0.01 4.17 16 20 N -0.59 -14.31 3.19 -164.70 -0.53 -14.84 16 21 C -0.21 -5.84 9.70 -15.06 -0.15 -5.99 16 22 H 0.08 2.38 6.45 -52.49 -0.34 2.04 16 23 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 24 N -0.93 -27.07 10.43 55.49 0.58 -26.49 16 25 Si 0.90 22.94 29.56 -169.99 -5.02 17.91 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.15 3.02 2.97 -68.54 -0.20 2.82 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 C 0.11 2.07 5.64 -5.01 -0.03 2.04 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.05 7.15 -51.93 -0.37 0.68 16 38 H 0.08 1.22 7.10 -51.93 -0.37 0.85 16 39 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 40 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 41 H 0.09 1.20 7.79 -51.93 -0.40 0.79 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.88 6.02 -51.93 -0.31 0.56 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.48 6.85 -51.93 -0.36 1.13 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 48 H 0.04 1.12 7.45 -51.93 -0.39 0.73 16 49 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.09 2.06 5.48 -51.93 -0.28 1.78 16 52 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -34.21 401.00 -10.99 -45.20 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -9.84 Total: 2.11 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.46 Total: 0.91 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.21 Total: -60.52 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.21 -10.99 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042347939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.573 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds