Wall clock time and date at job start Wed Apr 1 2020 03:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30837 * 125.89473 * 2 1 4 4 N 1.40089 * 108.20471 * 180.26007 * 3 2 1 5 5 H 0.97001 * 126.03672 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92269 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.12392 * 179.97438 * 6 4 3 8 8 C 1.35313 * 107.74794 * 0.02562 * 6 4 3 9 9 C 1.50697 * 126.04149 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47123 * 269.99737 * 9 8 6 11 11 C 1.50703 * 109.46747 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00174 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99383 * 180.02562 * 11 10 9 14 14 C 1.47156 * 121.22307 * 0.02562 * 13 11 10 15 15 C 1.52833 * 107.98135 * 122.70138 * 14 13 11 16 16 C 1.53089 * 110.58237 * 57.33679 * 15 14 13 17 17 H 1.08998 * 112.48933 * 71.39906 * 16 15 14 18 18 C 1.56031 * 106.38783 * 195.44924 * 16 15 14 19 19 C 1.54498 * 102.61360 * 78.38785 * 18 16 15 20 20 N 1.47426 * 107.14793 * 22.85222 * 19 18 16 21 21 C 1.36937 * 126.06212 * 181.65015 * 20 19 18 22 22 H 1.08000 * 120.00641 * 174.17023 * 21 20 19 23 23 C 1.38818 * 119.99859 * 354.16967 * 21 20 19 24 24 N 1.31618 * 119.99970 * 6.71027 * 23 21 20 25 25 Si 1.86804 * 119.99946 * 186.71209 * 23 21 20 26 26 H 1.48501 * 109.46659 * 94.98563 * 25 23 21 27 27 H 1.48495 * 109.47056 * 214.98139 * 25 23 21 28 28 H 1.48500 * 109.47155 * 334.98382 * 25 23 21 29 29 C 1.46470 * 107.88094 * 1.61159 * 20 19 18 30 30 H 1.08996 * 108.42371 * 89.91225 * 29 20 19 31 31 C 1.46758 * 121.21878 * 179.72138 * 13 11 10 32 32 H 1.09000 * 109.47147 * 269.69489 * 1 2 3 33 33 H 1.08999 * 109.46700 * 29.70014 * 1 2 3 34 34 H 1.09000 * 109.46538 * 149.69335 * 1 2 3 35 35 H 1.09005 * 109.46670 * 270.04522 * 7 6 4 36 36 H 1.08996 * 109.47360 * 30.04320 * 7 6 4 37 37 H 1.09002 * 109.47063 * 150.04683 * 7 6 4 38 38 H 1.08997 * 109.47089 * 30.00155 * 9 8 6 39 39 H 1.08994 * 109.47410 * 150.00027 * 9 8 6 40 40 H 1.08992 * 109.47048 * 300.00002 * 10 9 8 41 41 H 1.09006 * 109.46472 * 60.00185 * 10 9 8 42 42 H 1.09001 * 109.75580 * 242.32048 * 14 13 11 43 43 H 1.08999 * 109.75786 * 3.02413 * 14 13 11 44 44 H 1.08995 * 109.25446 * 177.62726 * 15 14 13 45 45 H 1.09006 * 109.25215 * 297.09302 * 15 14 13 46 46 H 1.09004 * 110.78565 * 196.67050 * 18 16 15 47 47 H 1.09002 * 110.78091 * 319.91845 * 18 16 15 48 48 H 1.08997 * 109.90636 * 142.23180 * 19 18 16 49 49 H 1.09005 * 109.90735 * 263.28851 * 19 18 16 50 50 H 0.96993 * 120.00166 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.22625 * 352.86282 * 31 13 11 52 52 H 1.08999 * 109.22769 * 112.22364 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 1 4.3908 1.2081 -0.0070 6 6 3.6143 -0.7153 -0.0091 7 6 4.8351 -1.5988 -0.0163 8 6 2.3272 -1.1330 -0.0057 9 6 1.8600 -2.5657 -0.0079 10 6 1.6968 -3.0467 -1.4511 11 6 1.2302 -4.4797 -1.4532 12 8 1.0458 -5.0590 -0.4038 13 7 1.0177 -5.1174 -2.6214 14 6 1.2334 -4.4406 -3.9102 15 6 2.2510 -5.2563 -4.7070 16 6 1.7602 -6.6943 -4.8940 17 1 0.9266 -6.7628 -5.5928 18 6 2.9998 -7.5273 -5.3458 19 6 3.7585 -7.7502 -4.0185 20 7 2.7773 -7.6070 -2.9276 21 6 3.0430 -7.6977 -1.5873 22 1 2.2672 -7.4834 -0.8672 23 6 4.3096 -8.0652 -1.1542 24 7 5.2894 -8.1978 -2.0229 25 14 4.6234 -8.3716 0.6616 26 1 4.4909 -9.8225 0.9488 27 1 5.9950 -7.9214 1.0098 28 1 3.6339 -7.6146 1.4696 29 6 1.4679 -7.3495 -3.5314 30 1 0.9758 -8.3060 -3.7076 31 6 0.5691 -6.5144 -2.6549 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3633 0.8927 -0.5092 34 1 -0.3632 -0.8872 -0.5186 35 1 5.1255 -1.8088 -1.0457 36 1 5.6532 -1.0923 0.4959 37 1 4.6096 -2.5343 0.4957 38 1 2.5953 -3.1884 0.5018 39 1 0.9031 -2.6367 0.5091 40 1 0.9615 -2.4241 -1.9606 41 1 2.6538 -2.9758 -1.9681 42 1 0.2935 -4.3861 -4.4595 43 1 1.6187 -3.4355 -3.7386 44 1 2.3949 -4.7956 -5.6843 45 1 3.2006 -5.2679 -4.1718 46 1 2.6898 -8.4785 -5.7785 47 1 3.6083 -6.9629 -6.0524 48 1 4.1894 -8.7512 -4.0009 49 1 4.5471 -7.0052 -3.9121 50 1 6.1744 -8.4549 -1.7204 51 1 0.5802 -6.9192 -1.6429 52 1 -0.4474 -6.5557 -3.0462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042347939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:27 Heat of formation + Delta-G solvation = 31.517157 kcal Electronic energy + Delta-G solvation = -32368.459417 eV Core-core repulsion = 28368.697985 eV Total energy + Delta-G solvation = -3999.761431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.35064 -41.29600 -39.57454 -36.45181 -35.18642 -34.60578 -34.28349 -32.83630 -31.62648 -30.50573 -30.00565 -28.83173 -27.99466 -26.45866 -25.86822 -24.23662 -23.79191 -21.71308 -21.13340 -20.89797 -20.16531 -19.53820 -18.43482 -18.30418 -17.78295 -16.97780 -16.58643 -16.46368 -16.04249 -15.99291 -15.62318 -15.19999 -15.03450 -14.65974 -14.44092 -14.17516 -14.14885 -14.09152 -13.76597 -13.67794 -13.40485 -13.37604 -13.22373 -13.11466 -13.07069 -12.91761 -12.83044 -12.70353 -12.59196 -12.44831 -12.28075 -12.01626 -11.97785 -11.58978 -11.40380 -11.34687 -11.22949 -11.08930 -10.62828 -10.56635 -10.18777 -9.38802 -9.32117 -8.75892 -7.81367 -5.10088 0.87126 1.38955 1.40147 1.51574 1.68336 1.86806 1.95814 2.32732 2.51120 3.37738 3.54901 3.69064 3.73141 3.85242 3.92569 3.98739 4.11663 4.17065 4.20266 4.27864 4.37787 4.47690 4.50163 4.54909 4.61370 4.65530 4.66818 4.71125 4.74321 4.79951 4.81074 4.84753 4.93855 4.97459 5.00065 5.07658 5.12609 5.16265 5.18475 5.20761 5.26899 5.37169 5.37601 5.60019 5.69519 5.75262 5.75851 5.81226 5.84891 6.27099 6.42352 6.70317 6.74015 7.18989 7.44952 7.87274 8.51064 9.29927 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.003861 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.418102 B = 7250.352913 C = 8462.813979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.080 3.920 3 N -0.324 5.324 4 N -0.471 5.471 5 H 0.448 0.552 6 C 0.097 3.903 7 C -0.097 4.097 8 C -0.248 4.248 9 C -0.014 4.014 10 C -0.114 4.114 11 C 0.508 3.492 12 O -0.590 6.590 13 N -0.599 5.599 14 C 0.109 3.891 15 C -0.120 4.120 16 C -0.084 4.084 17 H 0.121 0.879 18 C -0.131 4.131 19 C 0.187 3.813 20 N -0.604 5.604 21 C -0.202 4.202 22 H 0.068 0.932 23 C -0.061 4.061 24 N -0.948 5.948 25 Si 0.951 3.049 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.142 3.858 30 H 0.022 0.978 31 C 0.117 3.883 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.081 0.919 48 H -0.002 1.002 49 H 0.005 0.995 50 H 0.242 0.758 51 H 0.050 0.950 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 17.066 -6.425 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 N -0.148 5.148 4 N -0.181 5.181 5 H 0.295 0.705 6 C -0.032 4.032 7 C -0.155 4.155 8 C -0.259 4.259 9 C -0.053 4.053 10 C -0.153 4.153 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.331 5.331 14 C -0.013 4.013 15 C -0.158 4.158 16 C -0.103 4.103 17 H 0.139 0.861 18 C -0.169 4.169 19 C 0.062 3.938 20 N -0.330 5.330 21 C -0.332 4.332 22 H 0.086 0.914 23 C -0.254 4.254 24 N -0.599 5.599 25 Si 0.782 3.218 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.036 3.964 30 H 0.040 0.960 31 C -0.008 4.008 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.016 0.984 49 H 0.023 0.977 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.978 18.000 -5.732 20.506 hybrid contribution 1.454 -1.450 1.474 2.528 sum -6.524 16.550 -4.258 18.292 Atomic orbital electron populations 1.20309 0.85067 1.04204 1.03803 1.22636 0.98137 0.89726 0.98164 1.77195 0.87328 1.22981 1.27346 1.46134 1.07273 1.04777 1.59938 0.70522 1.21159 0.97387 0.85183 0.99474 1.20559 0.92733 0.97880 1.04333 1.19738 0.91853 0.95826 1.18527 1.19397 1.01311 0.89625 0.94971 1.21570 1.03444 0.90855 0.99480 1.21216 0.76254 0.89901 0.82838 1.90653 1.53954 1.69587 1.32871 1.48024 1.66274 1.12149 1.06659 1.21957 1.00329 0.96238 0.82740 1.21807 0.98296 0.94783 1.00929 1.22408 0.97939 0.94752 0.95245 0.86114 1.23034 0.97403 1.00017 0.96446 1.20947 0.90556 0.96638 0.85670 1.44482 1.04026 1.83120 1.01325 1.19130 0.95464 1.36051 0.82570 0.91407 1.25285 0.96282 1.03557 1.00242 1.70152 1.00758 1.56171 1.32777 0.85435 0.76639 0.77603 0.82153 1.21686 1.21846 1.20907 1.20894 0.86943 0.95505 0.93105 0.96022 1.21112 0.97160 0.81851 1.00628 0.89859 0.89910 0.89393 0.89236 0.88848 0.90711 0.93240 0.91115 0.86488 0.89084 0.88102 0.88339 0.88199 0.94695 0.91679 0.90010 0.98358 0.97668 0.94877 0.93116 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.12 71.24 0.72 -0.58 16 2 C 0.08 1.88 7.22 43.10 0.31 2.19 16 3 N -0.32 -8.05 12.70 -47.38 -0.60 -8.66 16 4 N -0.47 -9.74 7.36 -48.00 -0.35 -10.09 16 5 H 0.45 6.28 8.96 -213.33 -1.91 4.37 16 6 C 0.10 2.19 7.21 41.40 0.30 2.49 16 7 C -0.10 -1.90 10.22 71.24 0.73 -1.17 16 8 C -0.25 -6.20 5.35 -20.15 -0.11 -6.31 16 9 C -0.01 -0.39 4.45 29.85 0.13 -0.26 16 10 C -0.11 -2.98 4.05 29.85 0.12 -2.86 16 11 C 0.51 18.06 7.72 87.66 0.68 18.73 16 12 O -0.59 -26.87 15.44 -3.02 -0.05 -26.92 16 13 N -0.60 -19.11 2.98 -823.98 -2.45 -21.56 16 14 C 0.11 2.39 6.36 86.20 0.55 2.93 16 15 C -0.12 -3.08 5.04 30.57 0.15 -2.92 16 16 C -0.08 -2.38 3.68 -9.38 -0.03 -2.41 16 17 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 18 C -0.13 -4.34 6.32 32.15 0.20 -4.14 16 19 C 0.19 8.99 4.61 86.71 0.40 9.39 16 20 N -0.60 -30.18 3.19 -674.99 -2.16 -32.34 16 21 C -0.20 -11.66 9.70 84.03 0.82 -10.84 16 22 H 0.07 4.09 6.45 -2.91 -0.02 4.07 16 23 C -0.06 -3.62 5.48 84.86 0.47 -3.16 16 24 N -0.95 -58.13 10.43 21.65 0.23 -57.90 16 25 Si 0.95 49.36 29.56 68.60 2.03 51.39 16 26 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 28 H -0.28 -14.85 7.11 99.48 0.71 -14.15 16 29 C 0.14 5.42 2.97 44.61 0.13 5.55 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 C 0.12 4.15 5.64 85.61 0.48 4.64 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.35 7.94 -2.39 -0.02 1.33 16 35 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.76 7.15 -2.39 -0.02 1.75 16 38 H 0.05 1.64 7.10 -2.39 -0.02 1.62 16 39 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 40 H 0.12 2.29 7.91 -2.39 -0.02 2.27 16 41 H 0.09 2.35 7.79 -2.38 -0.02 2.33 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.77 6.02 -2.39 -0.01 1.76 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.03 1.23 6.85 -2.38 -0.02 1.21 16 46 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.08 2.35 7.98 -2.39 -0.02 2.34 16 48 H 0.00 -0.10 7.45 -2.39 -0.02 -0.12 16 49 H 0.01 0.28 7.20 -2.38 -0.02 0.26 16 50 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.05 2.27 5.48 -2.38 -0.01 2.26 16 52 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -81.06 401.00 1.71 -79.35 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.98 Total: 15.43 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.05 Total: 11.29 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -5.34 Total: -130.54 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -81.06 1.71 -79.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042347939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.869 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds