Wall clock time and date at job start Wed Apr 1 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34860 * 125.96324 * 2 1 4 4 N 1.36313 * 106.68809 * 180.02562 * 3 2 1 5 5 C 1.35417 * 107.39925 * 359.95258 * 4 3 2 6 6 N 1.30090 * 108.63108 * 0.06291 * 5 4 3 7 7 C 1.51042 * 123.98210 * 180.12860 * 5 4 3 8 8 C 1.53405 * 108.20962 * 15.93503 * 7 5 4 9 9 H 1.08993 * 109.50737 * 71.16568 * 8 7 5 10 10 C 1.50701 * 109.50722 * 191.25811 * 8 7 5 11 11 O 1.21278 * 120.00198 * 120.00142 * 10 8 7 12 12 N 1.34782 * 119.99638 * 299.99720 * 10 8 7 13 13 C 1.46502 * 119.99826 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.45860 * 60.02846 * 13 12 10 15 15 C 1.53045 * 109.46191 * 300.07286 * 13 12 10 16 16 C 1.53191 * 109.30668 * 301.34261 * 15 13 12 17 17 N 1.46925 * 108.78085 * 305.36424 * 16 15 13 18 18 C 1.36939 * 120.63287 * 233.59268 * 17 16 15 19 19 H 1.08000 * 120.00052 * 27.69779 * 18 17 16 20 20 C 1.38813 * 119.99891 * 207.69346 * 18 17 16 21 21 N 1.31621 * 119.99943 * 17.35335 * 20 18 17 22 22 Si 1.86798 * 119.99883 * 197.35362 * 20 18 17 23 23 H 1.48500 * 109.47044 * 60.00371 * 22 20 18 24 24 H 1.48497 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47409 * 300.00340 * 22 20 18 26 26 C 1.46927 * 118.73719 * 53.60591 * 17 16 15 27 27 C 1.53035 * 109.46227 * 180.02562 * 13 12 10 28 28 C 1.53151 * 109.23539 * 311.17793 * 8 7 5 29 29 C 1.46467 * 127.77656 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47375 * 89.99753 * 1 2 3 31 31 H 1.09002 * 109.46696 * 210.00085 * 1 2 3 32 32 H 1.08997 * 109.47276 * 329.99564 * 1 2 3 33 33 H 1.08003 * 126.65205 * 0.06898 * 3 2 1 34 34 H 1.09002 * 109.71784 * 135.61511 * 7 5 4 35 35 H 1.09000 * 109.71470 * 256.25515 * 7 5 4 36 36 H 0.96994 * 120.00334 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47549 * 60.00219 * 14 13 12 38 38 H 1.09004 * 109.46986 * 179.97438 * 14 13 12 39 39 H 1.08999 * 109.47186 * 299.99578 * 14 13 12 40 40 H 1.08999 * 109.49982 * 61.29222 * 15 13 12 41 41 H 1.09001 * 109.49633 * 181.39692 * 15 13 12 42 42 H 1.08999 * 109.58440 * 185.57674 * 16 15 13 43 43 H 1.08995 * 109.59104 * 65.15526 * 16 15 13 44 44 H 0.96998 * 119.99739 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.58995 * 186.60693 * 26 17 16 46 46 H 1.09003 * 109.58010 * 66.18598 * 26 17 16 47 47 H 1.09001 * 109.50270 * 178.60882 * 27 13 12 48 48 H 1.08999 * 109.49862 * 298.67109 * 27 13 12 49 49 H 1.08999 * 109.47663 * 309.48221 * 28 8 7 50 50 H 1.08997 * 109.46678 * 189.49192 * 28 8 7 51 51 H 1.09004 * 109.58190 * 316.92793 * 29 4 3 52 52 H 1.08997 * 109.58362 * 77.33853 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7119 0.0001 6 7 2.2957 -1.0869 -0.0002 7 6 4.7655 -1.5966 0.0026 8 6 5.9742 -0.7416 0.4042 9 1 5.9061 -0.4892 1.4623 10 6 7.2433 -1.5141 0.1517 11 8 8.0756 -1.0790 -0.6156 12 7 7.4533 -2.6885 0.7787 13 6 8.6872 -3.4393 0.5338 14 6 9.8916 -2.5856 0.9357 15 6 8.7844 -3.7896 -0.9529 16 6 7.5598 -4.6151 -1.3598 17 7 7.4582 -5.7804 -0.4707 18 6 7.3737 -7.0462 -0.9863 19 1 7.8100 -7.2674 -1.9492 20 6 6.7271 -8.0451 -0.2714 21 7 5.9124 -7.7280 0.7125 22 14 7.0134 -9.8392 -0.7057 23 1 8.4545 -10.1622 -0.5503 24 1 6.2129 -10.7016 0.2002 25 1 6.6010 -10.0800 -2.1117 26 6 7.4488 -5.5618 0.9822 27 6 8.6743 -4.7258 1.3624 28 6 5.9830 0.5429 -0.4299 29 6 4.8148 1.4382 -0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9763 2.1222 0.0010 34 1 4.6329 -2.4060 0.7206 35 1 4.9223 -2.0102 -0.9936 36 1 6.7875 -3.0367 1.3921 37 1 9.8225 -2.3353 1.9943 38 1 10.8098 -3.1442 0.7539 39 1 9.9005 -1.6692 0.3456 40 1 8.8169 -2.8727 -1.5413 41 1 9.6898 -4.3695 -1.1316 42 1 7.6717 -4.9508 -2.3908 43 1 6.6610 -4.0056 -1.2674 44 1 5.4603 -8.4260 1.2118 45 1 7.4875 -6.5220 1.4965 46 1 6.5409 -5.0294 1.2656 47 1 9.5809 -5.2969 1.1619 48 1 8.6291 -4.4755 2.4223 49 1 5.8805 0.2915 -1.4855 50 1 6.9227 1.0720 -0.2721 51 1 4.7130 2.2663 -0.7028 52 1 4.9995 1.8259 1.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045476487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:56 Heat of formation + Delta-G solvation = 36.724805 kcal Electronic energy + Delta-G solvation = -32135.774327 eV Core-core repulsion = 28136.238716 eV Total energy + Delta-G solvation = -3999.535611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.42905 -40.31481 -37.85190 -36.25288 -34.41748 -33.57273 -31.89153 -31.61003 -30.79117 -29.92320 -28.92854 -27.42911 -27.27241 -24.30699 -24.07249 -23.28834 -22.28353 -21.13933 -20.57877 -19.99451 -19.20096 -18.69187 -17.25188 -16.95982 -16.67505 -15.96923 -15.28154 -14.97037 -14.83243 -14.35974 -14.29904 -14.06724 -13.94233 -13.76525 -13.68910 -13.41373 -13.23368 -13.11049 -12.96702 -12.60523 -12.41337 -12.36320 -11.99684 -11.85261 -11.73396 -11.64199 -11.43244 -11.29748 -11.25826 -11.15873 -10.92875 -10.69508 -10.37589 -10.29468 -9.91637 -9.86237 -9.78680 -9.63738 -9.56311 -9.14312 -8.66865 -8.44480 -8.23489 -6.65219 -5.78151 -3.19187 1.96050 2.65218 2.75633 3.06490 3.34122 3.39975 3.45670 3.46942 4.10065 4.28443 4.39494 4.45313 4.51770 4.78810 4.88933 4.92239 5.00035 5.13144 5.17874 5.27016 5.32024 5.36909 5.45455 5.51597 5.56025 5.57594 5.61812 5.64754 5.72220 5.85245 5.90463 5.96655 5.99285 6.03405 6.17372 6.25753 6.28264 6.32592 6.38414 6.52581 6.65211 6.68521 6.74812 6.82847 6.94907 7.05651 7.10498 7.29145 7.58533 7.79473 7.84333 8.12010 8.44522 8.46181 9.22623 9.86097 10.42713 11.30423 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003348 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.014882 B = 8361.175014 C =10337.118925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.060 4.060 4 N -0.458 5.458 5 C 0.219 3.781 6 N -0.481 5.481 7 C -0.025 4.025 8 C -0.113 4.113 9 H 0.100 0.900 10 C 0.524 3.476 11 O -0.540 6.540 12 N -0.705 5.705 13 C 0.184 3.816 14 C -0.160 4.160 15 C -0.142 4.142 16 C 0.151 3.849 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.172 3.828 27 C -0.147 4.147 28 C -0.114 4.114 29 C 0.105 3.895 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.092 0.908 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 20.338 2.763 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.193 4.193 4 N -0.141 5.141 5 C -0.043 4.043 6 N -0.200 5.200 7 C -0.064 4.064 8 C -0.135 4.135 9 H 0.118 0.882 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.356 5.356 13 C 0.099 3.901 14 C -0.218 4.218 15 C -0.182 4.182 16 C 0.024 3.976 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.046 3.954 27 C -0.186 4.186 28 C -0.152 4.152 29 C -0.018 4.018 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.236 0.764 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.034 0.966 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.101 0.899 50 H 0.118 0.882 51 H 0.110 0.890 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.472 19.801 2.313 19.990 hybrid contribution -0.011 -0.221 0.195 0.295 sum -1.483 19.580 2.508 19.795 Atomic orbital electron populations 1.19995 0.87803 1.02455 1.02030 1.20820 0.96476 0.88338 1.07739 1.22242 0.82939 1.00216 1.13876 1.45389 1.06479 1.07444 1.54795 1.23131 0.94732 0.81376 1.05079 1.70009 0.99679 1.30243 1.20083 1.20153 0.85774 0.95358 1.05111 1.21449 0.93784 0.95994 1.02231 0.88168 1.20066 0.87254 0.81380 0.80379 1.90622 1.46077 1.68965 1.36100 1.46186 1.22183 1.21020 1.46187 1.20287 0.82720 0.90674 0.96443 1.22222 0.97557 1.01264 1.00761 1.22395 1.00715 1.00374 0.94744 1.20828 0.93739 0.88852 0.94139 1.44018 1.85363 1.01459 1.00420 1.19145 1.29209 0.85402 1.04442 0.91822 1.24999 0.96535 0.98516 0.99456 1.70005 1.28723 1.31739 1.24224 0.86392 0.77650 0.85133 0.77734 1.21125 1.21658 1.20926 1.20730 0.90897 0.98620 0.85128 1.22526 1.03352 0.95337 0.97407 1.21710 0.97810 0.94525 1.01114 1.22036 0.82171 0.94410 1.03140 0.91606 0.91167 0.91619 0.81108 0.87780 0.88392 0.76363 0.93415 0.92262 0.90950 0.90941 0.91899 0.93198 0.96713 0.93614 0.89267 0.96594 0.91043 0.92808 0.89866 0.88172 0.88973 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.42 36.01 0.38 -0.27 16 2 C 0.00 -0.06 7.10 -82.71 -0.59 -0.65 16 3 C -0.06 -0.65 11.55 -16.76 -0.19 -0.85 16 4 N -0.46 -5.11 3.13 -113.75 -0.36 -5.46 16 5 C 0.22 3.05 7.65 -155.25 -1.19 1.86 16 6 N -0.48 -7.72 11.24 -6.88 -0.08 -7.80 16 7 C -0.02 -0.32 5.46 -27.51 -0.15 -0.47 16 8 C -0.11 -1.21 2.55 -91.48 -0.23 -1.44 16 9 H 0.10 0.92 8.12 -51.93 -0.42 0.50 16 10 C 0.52 7.12 6.55 -10.98 -0.07 7.05 16 11 O -0.54 -8.60 12.05 5.56 0.07 -8.54 16 12 N -0.71 -10.10 4.00 -47.57 -0.19 -10.29 16 13 C 0.18 2.93 0.66 -131.78 -0.09 2.85 16 14 C -0.16 -2.28 8.40 37.16 0.31 -1.97 16 15 C -0.14 -2.57 4.67 -26.61 -0.12 -2.69 16 16 C 0.15 3.18 6.26 -3.71 -0.02 3.15 16 17 N -0.59 -14.25 2.99 -172.35 -0.52 -14.77 16 18 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 19 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 22 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.17 3.80 5.03 -3.74 -0.02 3.78 16 27 C -0.15 -2.56 4.95 -26.64 -0.13 -2.69 16 28 C -0.11 -1.05 4.67 -26.50 -0.12 -1.17 16 29 C 0.10 0.81 6.98 -3.91 -0.03 0.78 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.10 1.38 7.94 -51.93 -0.41 0.96 16 35 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 36 H 0.40 5.51 6.97 -40.82 -0.28 5.23 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 40 H 0.07 1.32 6.20 -51.93 -0.32 0.99 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 46 H 0.02 0.36 6.94 -51.93 -0.36 0.00 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 50 H 0.10 0.86 7.79 -51.93 -0.40 0.46 16 51 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -32.52 396.65 -10.70 -43.22 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.69 Total: 5.74 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.50 Total: 0.31 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.52 Total: -63.27 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.52 -10.70 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045476487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.946 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds