Wall clock time and date at job start Wed Apr 1 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34860 * 125.96324 * 2 1 4 4 N 1.36313 * 106.68809 * 180.02562 * 3 2 1 5 5 C 1.35417 * 107.39925 * 359.95258 * 4 3 2 6 6 N 1.30090 * 108.63108 * 0.06291 * 5 4 3 7 7 C 1.51042 * 123.98210 * 180.12860 * 5 4 3 8 8 C 1.53405 * 108.20962 * 15.93503 * 7 5 4 9 9 H 1.08993 * 109.50737 * 71.16568 * 8 7 5 10 10 C 1.50701 * 109.50722 * 191.25811 * 8 7 5 11 11 O 1.21278 * 120.00198 * 120.00142 * 10 8 7 12 12 N 1.34782 * 119.99638 * 299.99720 * 10 8 7 13 13 C 1.46502 * 119.99826 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.45860 * 60.02846 * 13 12 10 15 15 C 1.53045 * 109.46191 * 300.07286 * 13 12 10 16 16 C 1.53191 * 109.30668 * 301.34261 * 15 13 12 17 17 N 1.46925 * 108.78085 * 305.36424 * 16 15 13 18 18 C 1.36939 * 120.63287 * 233.59268 * 17 16 15 19 19 H 1.08000 * 120.00052 * 27.69779 * 18 17 16 20 20 C 1.38813 * 119.99891 * 207.69346 * 18 17 16 21 21 N 1.31621 * 119.99943 * 17.35335 * 20 18 17 22 22 Si 1.86798 * 119.99883 * 197.35362 * 20 18 17 23 23 H 1.48500 * 109.47044 * 60.00371 * 22 20 18 24 24 H 1.48497 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47409 * 300.00340 * 22 20 18 26 26 C 1.46927 * 118.73719 * 53.60591 * 17 16 15 27 27 C 1.53035 * 109.46227 * 180.02562 * 13 12 10 28 28 C 1.53151 * 109.23539 * 311.17793 * 8 7 5 29 29 C 1.46467 * 127.77656 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47375 * 89.99753 * 1 2 3 31 31 H 1.09002 * 109.46696 * 210.00085 * 1 2 3 32 32 H 1.08997 * 109.47276 * 329.99564 * 1 2 3 33 33 H 1.08003 * 126.65205 * 0.06898 * 3 2 1 34 34 H 1.09002 * 109.71784 * 135.61511 * 7 5 4 35 35 H 1.09000 * 109.71470 * 256.25515 * 7 5 4 36 36 H 0.96994 * 120.00334 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47549 * 60.00219 * 14 13 12 38 38 H 1.09004 * 109.46986 * 179.97438 * 14 13 12 39 39 H 1.08999 * 109.47186 * 299.99578 * 14 13 12 40 40 H 1.08999 * 109.49982 * 61.29222 * 15 13 12 41 41 H 1.09001 * 109.49633 * 181.39692 * 15 13 12 42 42 H 1.08999 * 109.58440 * 185.57674 * 16 15 13 43 43 H 1.08995 * 109.59104 * 65.15526 * 16 15 13 44 44 H 0.96998 * 119.99739 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.58995 * 186.60693 * 26 17 16 46 46 H 1.09003 * 109.58010 * 66.18598 * 26 17 16 47 47 H 1.09001 * 109.50270 * 178.60882 * 27 13 12 48 48 H 1.08999 * 109.49862 * 298.67109 * 27 13 12 49 49 H 1.08999 * 109.47663 * 309.48221 * 28 8 7 50 50 H 1.08997 * 109.46678 * 189.49192 * 28 8 7 51 51 H 1.09004 * 109.58190 * 316.92793 * 29 4 3 52 52 H 1.08997 * 109.58362 * 77.33853 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7119 0.0001 6 7 2.2957 -1.0869 -0.0002 7 6 4.7655 -1.5966 0.0026 8 6 5.9742 -0.7416 0.4042 9 1 5.9061 -0.4892 1.4623 10 6 7.2433 -1.5141 0.1517 11 8 8.0756 -1.0790 -0.6156 12 7 7.4533 -2.6885 0.7787 13 6 8.6872 -3.4393 0.5338 14 6 9.8916 -2.5856 0.9357 15 6 8.7844 -3.7896 -0.9529 16 6 7.5598 -4.6151 -1.3598 17 7 7.4582 -5.7804 -0.4707 18 6 7.3737 -7.0462 -0.9863 19 1 7.8100 -7.2674 -1.9492 20 6 6.7271 -8.0451 -0.2714 21 7 5.9124 -7.7280 0.7125 22 14 7.0134 -9.8392 -0.7057 23 1 8.4545 -10.1622 -0.5503 24 1 6.2129 -10.7016 0.2002 25 1 6.6010 -10.0800 -2.1117 26 6 7.4488 -5.5618 0.9822 27 6 8.6743 -4.7258 1.3624 28 6 5.9830 0.5429 -0.4299 29 6 4.8148 1.4382 -0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9763 2.1222 0.0010 34 1 4.6329 -2.4060 0.7206 35 1 4.9223 -2.0102 -0.9936 36 1 6.7875 -3.0367 1.3921 37 1 9.8225 -2.3353 1.9943 38 1 10.8098 -3.1442 0.7539 39 1 9.9005 -1.6692 0.3456 40 1 8.8169 -2.8727 -1.5413 41 1 9.6898 -4.3695 -1.1316 42 1 7.6717 -4.9508 -2.3908 43 1 6.6610 -4.0056 -1.2674 44 1 5.4603 -8.4260 1.2118 45 1 7.4875 -6.5220 1.4965 46 1 6.5409 -5.0294 1.2656 47 1 9.5809 -5.2969 1.1619 48 1 8.6291 -4.4755 2.4223 49 1 5.8805 0.2915 -1.4855 50 1 6.9227 1.0720 -0.2721 51 1 4.7130 2.2663 -0.7028 52 1 4.9995 1.8259 1.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045476487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:55 Heat of formation + Delta-G solvation = 17.999877 kcal Electronic energy + Delta-G solvation = -32136.586301 eV Core-core repulsion = 28136.238716 eV Total energy + Delta-G solvation = -4000.347585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.32887 -41.53430 -39.20131 -37.27883 -36.05239 -34.54767 -33.54960 -32.48049 -32.21880 -31.57772 -29.84676 -29.05303 -28.12310 -25.92716 -25.14117 -24.25372 -23.89531 -22.61775 -21.70169 -21.07468 -20.12736 -20.07744 -18.78815 -18.10469 -17.76777 -16.86982 -16.83574 -16.36408 -16.18816 -15.70020 -15.36263 -15.24451 -15.13488 -15.07028 -14.85140 -14.74572 -14.59858 -14.42586 -14.02639 -13.81285 -13.50320 -13.29492 -13.16057 -13.07283 -13.01438 -12.83729 -12.74832 -12.61661 -12.58783 -12.47415 -12.26213 -12.18195 -12.10082 -11.97424 -11.74561 -11.32133 -11.28618 -10.88681 -10.52687 -10.47119 -10.42527 -9.90559 -9.12172 -8.64128 -7.86477 -5.29999 1.08079 1.47166 1.48365 1.55415 1.64931 1.86979 2.08672 2.24474 2.52068 3.18689 3.28195 3.50939 3.52120 3.60685 3.72103 3.85299 4.03145 4.04165 4.12369 4.16548 4.17341 4.27058 4.35204 4.46708 4.50403 4.51996 4.62501 4.67378 4.73855 4.76721 4.84902 4.88586 4.90726 4.92695 4.93762 5.00365 5.03385 5.09975 5.17324 5.17572 5.23848 5.32054 5.38572 5.39571 5.50725 5.64831 5.71520 5.79796 5.89795 6.25379 6.40336 6.67072 7.17469 7.19223 7.31406 7.88329 8.39375 9.18958 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003348 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.014882 B = 8361.175014 C =10337.118925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.042 4.042 3 C -0.041 4.041 4 N -0.452 5.452 5 C 0.195 3.805 6 N -0.532 5.532 7 C -0.017 4.017 8 C -0.099 4.099 9 H 0.124 0.876 10 C 0.525 3.475 11 O -0.560 6.560 12 N -0.707 5.707 13 C 0.188 3.812 14 C -0.149 4.149 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.267 4.267 19 H 0.059 0.941 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.179 3.821 27 C -0.132 4.132 28 C -0.109 4.109 29 C 0.104 3.896 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.213 0.787 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.404 0.596 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.008 0.992 44 H 0.250 0.750 45 H 0.054 0.946 46 H 0.007 0.993 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.113 0.887 51 H 0.120 0.880 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 23.203 3.609 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.171 4.171 3 C -0.174 4.174 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.253 5.253 7 C -0.057 4.057 8 C -0.121 4.121 9 H 0.142 0.858 10 C 0.312 3.688 11 O -0.439 6.439 12 N -0.358 5.358 13 C 0.102 3.898 14 C -0.207 4.207 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.397 4.397 19 H 0.076 0.924 20 C -0.239 4.239 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.054 3.946 27 C -0.172 4.172 28 C -0.147 4.147 29 C -0.016 4.016 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.230 0.770 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.240 0.760 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.132 0.868 51 H 0.138 0.862 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.668 22.696 3.155 22.924 hybrid contribution -0.309 -1.081 -0.136 1.133 sum -0.977 21.615 3.019 21.846 Atomic orbital electron populations 1.20046 0.86296 1.03114 1.02450 1.21415 0.97889 0.88509 1.09275 1.22859 0.82244 1.01366 1.10943 1.45609 1.07801 1.06679 1.53414 1.23051 0.94227 0.82838 1.06621 1.69922 1.01235 1.32650 1.21481 1.19973 0.86931 0.95489 1.03289 1.21392 0.90871 0.95847 1.03955 0.85777 1.20486 0.87822 0.80979 0.79513 1.90612 1.47091 1.69431 1.36809 1.46177 1.21823 1.21243 1.46515 1.20164 0.84501 0.90679 0.94472 1.22101 0.96495 1.00390 1.01705 1.22232 0.98637 0.99506 0.96576 1.20848 0.95026 0.88257 0.93179 1.44245 1.85585 1.01412 1.01645 1.19414 1.28850 0.86974 1.04461 0.92372 1.25671 0.96551 1.01993 0.99719 1.70148 1.29621 1.32432 1.25167 0.85429 0.77581 0.80647 0.77303 1.20425 1.21845 1.20653 1.20574 0.92771 0.97584 0.83712 1.22323 1.00444 0.95134 0.99272 1.21679 0.99348 0.93972 0.99656 1.22325 0.79812 0.93960 1.05503 0.91270 0.92718 0.88722 0.76992 0.89143 0.90902 0.76046 0.91616 0.91574 0.91563 0.90788 0.92225 0.94452 0.97366 0.94093 0.92712 0.97489 0.91528 0.90037 0.91744 0.86846 0.86242 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 10.42 71.24 0.74 -0.43 16 2 C -0.04 -1.08 7.10 41.41 0.29 -0.79 16 3 C -0.04 -0.77 11.55 83.22 0.96 0.19 16 4 N -0.45 -9.08 3.13 -513.78 -1.61 -10.69 16 5 C 0.20 5.43 7.65 138.24 1.06 6.49 16 6 N -0.53 -17.56 11.24 -175.69 -1.98 -19.54 16 7 C -0.02 -0.46 5.46 30.09 0.16 -0.30 16 8 C -0.10 -1.99 2.55 -11.35 -0.03 -2.02 16 9 H 0.12 1.95 8.12 -2.39 -0.02 1.93 16 10 C 0.53 13.73 6.55 87.66 0.57 14.31 16 11 O -0.56 -17.13 12.05 -3.02 -0.04 -17.17 16 12 N -0.71 -19.70 4.00 -422.79 -1.69 -21.39 16 13 C 0.19 5.77 0.66 3.63 0.00 5.77 16 14 C -0.15 -3.87 8.40 71.98 0.60 -3.26 16 15 C -0.13 -4.65 4.67 30.67 0.14 -4.51 16 16 C 0.15 6.62 6.26 86.36 0.54 7.16 16 17 N -0.61 -30.10 2.99 -699.20 -2.09 -32.19 16 18 C -0.27 -14.84 9.59 84.03 0.81 -14.04 16 19 H 0.06 3.23 7.89 -2.91 -0.02 3.20 16 20 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 21 N -0.93 -54.14 11.19 21.65 0.24 -53.90 16 22 Si 0.96 45.21 29.59 68.60 2.03 47.24 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 26 C 0.18 8.08 5.03 86.35 0.43 8.51 16 27 C -0.13 -4.51 4.95 30.65 0.15 -4.36 16 28 C -0.11 -1.76 4.67 30.74 0.14 -1.61 16 29 C 0.10 1.22 6.98 86.48 0.60 1.82 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.09 2.56 7.94 -2.39 -0.02 2.54 16 35 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 36 H 0.40 10.95 6.97 -92.71 -0.65 10.31 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.85 6.17 -2.39 -0.01 1.83 16 40 H 0.07 2.66 6.20 -2.39 -0.01 2.64 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 43 H 0.01 0.37 7.74 -2.39 -0.02 0.36 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.05 2.86 6.04 -2.39 -0.01 2.84 16 46 H 0.01 0.33 6.94 -2.39 -0.02 0.31 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 50 H 0.11 1.60 7.79 -2.39 -0.02 1.58 16 51 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -73.50 396.65 2.74 -70.75 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.27 Total: 25.95 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.61 Total: 10.93 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -7.13 Total: -137.71 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.04 Total: -17.17 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.50 2.74 -70.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045476487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.752 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds