Wall clock time and date at job start Wed Apr 1 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35313 * 126.13046 * 2 1 4 4 C 1.39866 * 107.91860 * 180.28862 * 3 2 1 5 5 C 1.50706 * 125.89447 * 179.73872 * 4 3 2 6 6 C 1.50698 * 109.46922 * 124.99994 * 5 4 3 7 7 O 1.21280 * 120.00419 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99777 * 180.02562 * 6 5 4 9 9 C 1.47564 * 118.63558 * 353.46421 * 8 6 5 10 10 C 1.54300 * 111.97923 * 137.75986 * 9 8 6 11 11 C 1.50876 * 110.30786 * 319.64656 * 10 9 8 12 12 C 1.52612 * 109.37508 * 91.76155 * 11 10 9 13 13 C 1.47078 * 114.26322 * 275.26035 * 12 11 10 14 14 C 1.54252 * 112.34804 * 301.71790 * 13 12 11 15 15 C 1.54399 * 104.95086 * 237.63052 * 14 13 12 16 16 N 1.48140 * 104.61561 * 23.87092 * 15 14 13 17 17 C 1.36944 * 127.83237 * 140.43201 * 16 15 14 18 18 H 1.07989 * 120.00002 * 331.46205 * 17 16 15 19 19 C 1.38816 * 119.99769 * 151.45803 * 17 16 15 20 20 N 1.31614 * 119.99869 * 170.50451 * 19 17 16 21 21 Si 1.86798 * 119.99992 * 350.50804 * 19 17 16 22 22 H 1.48505 * 109.47161 * 85.61361 * 21 19 17 23 23 H 1.48502 * 109.47039 * 205.61140 * 21 19 17 24 24 H 1.48496 * 109.47544 * 325.61073 * 21 19 17 25 25 C 1.48158 * 104.33515 * 320.43723 * 16 15 14 26 26 C 1.44590 * 118.63400 * 173.73994 * 8 6 5 27 27 N 1.30839 * 108.20789 * 359.55200 * 4 3 2 28 28 N 1.34955 * 126.12326 * 180.02562 * 2 1 3 29 29 H 0.97000 * 126.03391 * 359.95429 * 28 2 1 30 30 H 1.09002 * 109.47566 * 89.99667 * 1 2 3 31 31 H 1.08998 * 109.47387 * 210.00026 * 1 2 3 32 32 H 1.09005 * 109.46846 * 329.99741 * 1 2 3 33 33 H 1.08001 * 126.03819 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47140 * 244.99505 * 5 4 3 35 35 H 1.08995 * 109.47490 * 4.99665 * 5 4 3 36 36 H 1.09001 * 108.94051 * 258.56973 * 9 8 6 37 37 H 1.09006 * 108.93771 * 17.17448 * 9 8 6 38 38 H 1.08995 * 109.35419 * 199.34820 * 10 9 8 39 39 H 1.08998 * 109.09773 * 79.78248 * 10 9 8 40 40 H 1.09001 * 109.48532 * 331.79235 * 11 10 9 41 41 H 1.08995 * 109.48922 * 211.73916 * 11 10 9 42 42 H 1.09004 * 108.52501 * 154.02417 * 12 11 10 43 43 H 1.09001 * 108.40249 * 36.41203 * 12 11 10 44 44 H 1.09004 * 110.34213 * 356.49658 * 14 13 12 45 45 H 1.09001 * 110.35028 * 118.76053 * 14 13 12 46 46 H 1.08997 * 110.40813 * 142.66052 * 15 14 13 47 47 H 1.09000 * 110.40542 * 264.97053 * 15 14 13 48 48 H 0.97006 * 120.00263 * 180.02562 * 20 19 17 49 49 H 1.08998 * 110.40444 * 280.76302 * 25 16 15 50 50 H 1.09001 * 110.40610 * 158.32736 * 25 16 15 51 51 H 1.09000 * 109.47381 * 30.55985 * 26 8 6 52 52 H 1.08998 * 109.46827 * 150.55299 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6558 -0.0067 5 6 4.8543 1.5393 -0.0146 6 6 5.7453 1.1752 1.1449 7 8 5.4208 0.2862 1.9033 8 7 6.9025 1.8383 1.3397 9 6 7.3392 2.8128 0.3212 10 6 7.8985 4.1022 0.9580 11 6 7.0627 4.5034 2.1484 12 6 7.6517 3.8836 3.4125 13 6 7.2085 2.5056 3.6730 14 6 5.6751 2.3966 3.7995 15 6 5.4329 1.7888 5.1980 16 7 6.6492 2.1326 5.9707 17 6 6.7293 2.5256 7.2801 18 1 5.9033 3.0491 7.7382 19 6 7.8723 2.2510 8.0184 20 7 8.0298 2.7859 9.2106 21 14 9.1867 1.1224 7.3200 22 1 10.1140 1.9100 6.4684 23 1 9.9461 0.4986 8.4332 24 1 8.5450 0.0613 6.5030 25 6 7.7593 1.9550 5.0057 26 6 7.6674 1.5609 2.5349 27 7 3.6334 -0.6526 -0.0009 28 7 2.3026 -1.0901 -0.0005 29 1 2.0054 -2.0134 -0.0003 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9741 2.1210 0.0004 34 1 5.3981 1.3992 -0.9488 35 1 4.5489 2.5818 0.0751 36 1 8.1116 2.3558 -0.2974 37 1 6.4886 3.0698 -0.3102 38 1 7.8851 4.9046 0.2204 39 1 8.9245 3.9248 1.2804 40 1 6.0411 4.1488 2.0115 41 1 7.0614 5.5893 2.2424 42 1 7.3731 4.5038 4.2645 43 1 8.7381 3.8871 3.3235 44 1 5.2181 3.3839 3.7311 45 1 5.2767 1.7394 3.0265 46 1 4.5513 2.2344 5.6586 47 1 5.3183 0.7071 5.1276 48 1 8.8287 2.5943 9.7265 49 1 8.0107 0.8991 4.9058 50 1 8.6323 2.5263 5.3212 51 1 7.5082 0.5254 2.8360 52 1 8.7265 1.7220 2.3340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045927912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:28 Heat of formation + Delta-G solvation = 79.403663 kcal Electronic energy + Delta-G solvation = -32533.563833 eV Core-core repulsion = 28535.878916 eV Total energy + Delta-G solvation = -3997.684917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47046 -40.72714 -38.19848 -36.34073 -33.69212 -33.49826 -32.70764 -31.77498 -31.16178 -29.13351 -28.76306 -27.30826 -27.14606 -25.56723 -24.47272 -23.35347 -21.37223 -20.76374 -20.41943 -20.37003 -18.69918 -18.15573 -17.59903 -17.10109 -16.81632 -16.20892 -15.72630 -15.20875 -15.04737 -14.68462 -14.26523 -14.13766 -13.89102 -13.76518 -13.59260 -13.43377 -13.19858 -13.09264 -13.00534 -12.81661 -12.63266 -12.44812 -12.20290 -12.01435 -11.94510 -11.72673 -11.19449 -11.01834 -10.99078 -10.94019 -10.64749 -10.49706 -10.24237 -10.18149 -9.90775 -9.84510 -9.74947 -9.58427 -9.36913 -9.30400 -8.70572 -8.64222 -8.34244 -6.83814 -5.85032 -3.23990 1.76624 2.54194 2.72370 2.75487 3.15522 3.38128 3.52397 3.56377 4.34598 4.38849 4.56234 4.61294 4.68459 4.79570 4.85762 4.99780 5.05839 5.09588 5.10528 5.13171 5.18336 5.34352 5.35040 5.42531 5.48536 5.53396 5.56413 5.60015 5.67557 5.73455 5.78355 5.94100 5.96960 6.03863 6.10117 6.13056 6.17659 6.33730 6.38762 6.47918 6.52369 6.62572 6.69126 6.75352 6.80587 6.92447 7.02474 7.12531 7.16634 7.43363 7.61533 7.88051 8.32155 8.43052 8.90471 9.76514 10.39513 11.32129 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003466 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.835002 B = 8076.631253 C = 9220.866559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.264 4.264 4 C 0.089 3.911 5 C -0.061 4.061 6 C 0.513 3.487 7 O -0.508 6.508 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.131 4.131 11 C -0.114 4.114 12 C -0.098 4.098 13 C -0.079 4.079 14 C -0.140 4.140 15 C 0.132 3.868 16 N -0.608 5.608 17 C -0.230 4.230 18 H 0.089 0.911 19 C 0.020 3.980 20 N -0.921 5.921 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.304 1.304 24 H -0.268 1.268 25 C 0.116 3.884 26 C 0.124 3.876 27 N -0.260 5.260 28 N -0.475 5.475 29 H 0.436 0.564 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.026 0.974 48 H 0.262 0.738 49 H 0.033 0.967 50 H 0.060 0.940 51 H 0.085 0.915 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 0.131 -26.908 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.294 4.294 4 C -0.079 4.079 5 C -0.103 4.103 6 C 0.300 3.700 7 O -0.383 6.383 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.151 4.151 12 C -0.136 4.136 13 C -0.082 4.082 14 C -0.179 4.179 15 C 0.006 3.994 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.106 0.894 19 C -0.178 4.178 20 N -0.565 5.565 21 Si 0.721 3.279 22 H -0.214 1.214 23 H -0.232 1.232 24 H -0.193 1.193 25 C -0.010 4.010 26 C 0.000 4.000 27 N -0.083 5.083 28 N -0.184 5.184 29 H 0.279 0.721 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.051 0.949 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.541 -1.333 -26.198 27.587 hybrid contribution 0.304 -0.230 -0.161 0.414 sum -8.237 -1.563 -26.359 27.660 Atomic orbital electron populations 1.20447 0.87358 1.04078 1.03188 1.21071 0.94542 0.87795 1.01297 1.21069 0.91377 0.99171 1.17753 1.21493 0.94421 0.91593 1.00383 1.20132 0.91972 0.99197 0.98996 1.20263 0.81533 0.82076 0.86154 1.90760 1.72014 1.29343 1.46207 1.47686 1.22578 1.40942 1.22449 1.22079 1.00137 0.89507 0.89874 1.21846 1.00418 0.96159 0.98515 1.21064 0.99948 0.99807 0.94329 1.20334 0.99584 0.95915 0.97721 1.21013 0.97177 0.94790 0.95230 1.23055 0.94307 1.00709 0.99783 1.21631 0.90708 0.96623 0.90448 1.45233 1.01209 1.78914 1.07915 1.18653 1.04022 1.29818 0.83212 0.89388 1.25235 0.98661 0.98886 0.95026 1.69733 1.28469 1.46404 1.11921 0.86822 0.81672 0.82256 0.77153 1.21433 1.23178 1.19266 1.22189 0.92996 0.97614 0.88214 1.21731 0.94290 1.00361 0.83569 1.77409 0.95594 1.12398 1.22854 1.46326 1.04186 1.08169 1.59754 0.72071 0.90284 0.91119 0.89504 0.83589 0.87583 0.86989 0.91841 0.90206 0.90907 0.91413 0.91501 0.92121 0.91371 0.92841 0.93019 0.89436 0.93506 0.95650 0.92806 0.94917 0.92201 0.89675 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.43 36.00 0.38 -0.13 16 2 C 0.08 0.78 7.21 -82.26 -0.59 0.18 16 3 C -0.26 -2.83 10.64 -40.02 -0.43 -3.25 16 4 C 0.09 1.12 6.02 -82.40 -0.50 0.62 16 5 C -0.06 -0.62 4.57 -29.03 -0.13 -0.75 16 6 C 0.51 7.13 5.89 -10.98 -0.06 7.06 16 7 O -0.51 -9.43 13.04 5.56 0.07 -9.36 16 8 N -0.60 -7.51 2.03 -172.34 -0.35 -7.86 16 9 C 0.11 0.89 6.01 -2.78 -0.02 0.87 16 10 C -0.13 -1.14 5.71 -27.12 -0.15 -1.29 16 11 C -0.11 -1.31 5.35 -28.00 -0.15 -1.46 16 12 C -0.10 -1.52 3.86 -29.77 -0.11 -1.64 16 13 C -0.08 -1.41 0.67 -155.01 -0.10 -1.51 16 14 C -0.14 -2.62 5.19 -25.34 -0.13 -2.75 16 15 C 0.13 2.99 7.23 -2.41 -0.02 2.97 16 16 N -0.61 -15.70 3.10 -168.87 -0.52 -16.22 16 17 C -0.23 -6.84 10.79 -15.05 -0.16 -7.00 16 18 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 19 C 0.02 0.61 5.50 -17.43 -0.10 0.51 16 20 N -0.92 -29.41 13.97 55.49 0.78 -28.64 16 21 Si 0.89 23.70 24.57 -169.99 -4.18 19.52 16 22 H -0.29 -7.29 6.62 56.52 0.37 -6.92 16 23 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 24 H -0.27 -7.07 6.05 56.52 0.34 -6.73 16 25 C 0.12 2.64 3.78 -2.42 -0.01 2.63 16 26 C 0.12 1.90 4.38 -4.08 -0.02 1.89 16 27 N -0.26 -3.71 12.04 33.67 0.41 -3.30 16 28 N -0.48 -5.16 7.36 33.48 0.25 -4.91 16 29 H 0.44 3.40 8.96 -182.61 -1.64 1.76 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.11 0.82 7.78 -51.93 -0.40 0.41 16 35 H 0.11 0.84 7.67 -51.93 -0.40 0.44 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.48 5.77 -51.93 -0.30 0.18 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 40 H 0.07 0.80 6.07 -51.93 -0.31 0.49 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.79 7.37 -51.93 -0.38 0.41 16 44 H 0.05 0.93 6.96 -51.93 -0.36 0.57 16 45 H 0.09 1.61 3.01 -51.93 -0.16 1.45 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 49 H 0.03 0.78 5.73 -51.93 -0.30 0.48 16 50 H 0.06 1.43 5.55 -51.93 -0.29 1.14 16 51 H 0.08 1.53 6.81 -51.93 -0.35 1.18 16 52 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -37.99 383.90 -9.64 -47.63 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -9.57 Total: 0.39 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.31 Total: -3.05 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.55 Total: -60.92 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.18 Total: 19.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.99 -9.64 -47.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045927912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.036 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds