Wall clock time and date at job start Wed Apr 1 2020 03:56:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.35313 * 126.13046 * 2 1
4 4 C 1.39866 * 107.91860 * 180.28862 * 3 2 1
5 5 C 1.50706 * 125.89447 * 179.73872 * 4 3 2
6 6 C 1.50698 * 109.46922 * 124.99994 * 5 4 3
7 7 O 1.21280 * 120.00419 * 359.97438 * 6 5 4
8 8 N 1.34784 * 119.99777 * 180.02562 * 6 5 4
9 9 C 1.47564 * 118.63558 * 353.46421 * 8 6 5
10 10 C 1.54300 * 111.97923 * 137.75986 * 9 8 6
11 11 C 1.50876 * 110.30786 * 319.64656 * 10 9 8
12 12 C 1.52612 * 109.37508 * 91.76155 * 11 10 9
13 13 C 1.47078 * 114.26322 * 275.26035 * 12 11 10
14 14 C 1.54252 * 112.34804 * 301.71790 * 13 12 11
15 15 C 1.54399 * 104.95086 * 237.63052 * 14 13 12
16 16 N 1.48140 * 104.61561 * 23.87092 * 15 14 13
17 17 C 1.36944 * 127.83237 * 140.43201 * 16 15 14
18 18 H 1.07989 * 120.00002 * 331.46205 * 17 16 15
19 19 C 1.38816 * 119.99769 * 151.45803 * 17 16 15
20 20 N 1.31614 * 119.99869 * 170.50451 * 19 17 16
21 21 Si 1.86798 * 119.99992 * 350.50804 * 19 17 16
22 22 H 1.48505 * 109.47161 * 85.61361 * 21 19 17
23 23 H 1.48502 * 109.47039 * 205.61140 * 21 19 17
24 24 H 1.48496 * 109.47544 * 325.61073 * 21 19 17
25 25 C 1.48158 * 104.33515 * 320.43723 * 16 15 14
26 26 C 1.44590 * 118.63400 * 173.73994 * 8 6 5
27 27 N 1.30839 * 108.20789 * 359.55200 * 4 3 2
28 28 N 1.34955 * 126.12326 * 180.02562 * 2 1 3
29 29 H 0.97000 * 126.03391 * 359.95429 * 28 2 1
30 30 H 1.09002 * 109.47566 * 89.99667 * 1 2 3
31 31 H 1.08998 * 109.47387 * 210.00026 * 1 2 3
32 32 H 1.09005 * 109.46846 * 329.99741 * 1 2 3
33 33 H 1.08001 * 126.03819 * 0.02562 * 3 2 1
34 34 H 1.09000 * 109.47140 * 244.99505 * 5 4 3
35 35 H 1.08995 * 109.47490 * 4.99665 * 5 4 3
36 36 H 1.09001 * 108.94051 * 258.56973 * 9 8 6
37 37 H 1.09006 * 108.93771 * 17.17448 * 9 8 6
38 38 H 1.08995 * 109.35419 * 199.34820 * 10 9 8
39 39 H 1.08998 * 109.09773 * 79.78248 * 10 9 8
40 40 H 1.09001 * 109.48532 * 331.79235 * 11 10 9
41 41 H 1.08995 * 109.48922 * 211.73916 * 11 10 9
42 42 H 1.09004 * 108.52501 * 154.02417 * 12 11 10
43 43 H 1.09001 * 108.40249 * 36.41203 * 12 11 10
44 44 H 1.09004 * 110.34213 * 356.49658 * 14 13 12
45 45 H 1.09001 * 110.35028 * 118.76053 * 14 13 12
46 46 H 1.08997 * 110.40813 * 142.66052 * 15 14 13
47 47 H 1.09000 * 110.40542 * 264.97053 * 15 14 13
48 48 H 0.97006 * 120.00263 * 180.02562 * 20 19 17
49 49 H 1.08998 * 110.40444 * 280.76302 * 25 16 15
50 50 H 1.09001 * 110.40610 * 158.32736 * 25 16 15
51 51 H 1.09000 * 109.47381 * 30.55985 * 26 8 6
52 52 H 1.08998 * 109.46827 * 150.55299 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3048 1.0929 0.0000
4 6 3.6334 0.6558 -0.0067
5 6 4.8543 1.5393 -0.0146
6 6 5.7453 1.1752 1.1449
7 8 5.4208 0.2862 1.9033
8 7 6.9025 1.8383 1.3397
9 6 7.3392 2.8128 0.3212
10 6 7.8985 4.1022 0.9580
11 6 7.0627 4.5034 2.1484
12 6 7.6517 3.8836 3.4125
13 6 7.2085 2.5056 3.6730
14 6 5.6751 2.3966 3.7995
15 6 5.4329 1.7888 5.1980
16 7 6.6492 2.1326 5.9707
17 6 6.7293 2.5256 7.2801
18 1 5.9033 3.0491 7.7382
19 6 7.8723 2.2510 8.0184
20 7 8.0298 2.7859 9.2106
21 14 9.1867 1.1224 7.3200
22 1 10.1140 1.9100 6.4684
23 1 9.9461 0.4986 8.4332
24 1 8.5450 0.0613 6.5030
25 6 7.7593 1.9550 5.0057
26 6 7.6674 1.5609 2.5349
27 7 3.6334 -0.6526 -0.0009
28 7 2.3026 -1.0901 -0.0005
29 1 2.0054 -2.0134 -0.0003
30 1 -0.3634 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5139
33 1 1.9741 2.1210 0.0004
34 1 5.3981 1.3992 -0.9488
35 1 4.5489 2.5818 0.0751
36 1 8.1116 2.3558 -0.2974
37 1 6.4886 3.0698 -0.3102
38 1 7.8851 4.9046 0.2204
39 1 8.9245 3.9248 1.2804
40 1 6.0411 4.1488 2.0115
41 1 7.0614 5.5893 2.2424
42 1 7.3731 4.5038 4.2645
43 1 8.7381 3.8871 3.3235
44 1 5.2181 3.3839 3.7311
45 1 5.2767 1.7394 3.0265
46 1 4.5513 2.2344 5.6586
47 1 5.3183 0.7071 5.1276
48 1 8.8287 2.5943 9.7265
49 1 8.0107 0.8991 4.9058
50 1 8.6323 2.5263 5.3212
51 1 7.5082 0.5254 2.8360
52 1 8.7265 1.7220 2.3340
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001045927912.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:28
Heat of formation + Delta-G solvation = 79.403663 kcal
Electronic energy + Delta-G solvation = -32533.563833 eV
Core-core repulsion = 28535.878916 eV
Total energy + Delta-G solvation = -3997.684917 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.47046 -40.72714 -38.19848 -36.34073 -33.69212 -33.49826 -32.70764 -31.77498
-31.16178 -29.13351 -28.76306 -27.30826 -27.14606 -25.56723 -24.47272 -23.35347
-21.37223 -20.76374 -20.41943 -20.37003 -18.69918 -18.15573 -17.59903 -17.10109
-16.81632 -16.20892 -15.72630 -15.20875 -15.04737 -14.68462 -14.26523 -14.13766
-13.89102 -13.76518 -13.59260 -13.43377 -13.19858 -13.09264 -13.00534 -12.81661
-12.63266 -12.44812 -12.20290 -12.01435 -11.94510 -11.72673 -11.19449 -11.01834
-10.99078 -10.94019 -10.64749 -10.49706 -10.24237 -10.18149 -9.90775 -9.84510
-9.74947 -9.58427 -9.36913 -9.30400 -8.70572 -8.64222 -8.34244 -6.83814
-5.85032 -3.23990 1.76624 2.54194 2.72370 2.75487 3.15522 3.38128
3.52397 3.56377 4.34598 4.38849 4.56234 4.61294 4.68459 4.79570
4.85762 4.99780 5.05839 5.09588 5.10528 5.13171 5.18336 5.34352
5.35040 5.42531 5.48536 5.53396 5.56413 5.60015 5.67557 5.73455
5.78355 5.94100 5.96960 6.03863 6.10117 6.13056 6.17659 6.33730
6.38762 6.47918 6.52369 6.62572 6.69126 6.75352 6.80587 6.92447
7.02474 7.12531 7.16634 7.43363 7.61533 7.88051 8.32155 8.43052
8.90471 9.76514 10.39513 11.32129
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.012691 B = 0.003466 C = 0.003036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2205.835002 B = 8076.631253 C = 9220.866559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.092 4.092
2 C 0.081 3.919
3 C -0.264 4.264
4 C 0.089 3.911
5 C -0.061 4.061
6 C 0.513 3.487
7 O -0.508 6.508
8 N -0.603 5.603
9 C 0.107 3.893
10 C -0.131 4.131
11 C -0.114 4.114
12 C -0.098 4.098
13 C -0.079 4.079
14 C -0.140 4.140
15 C 0.132 3.868
16 N -0.608 5.608
17 C -0.230 4.230
18 H 0.089 0.911
19 C 0.020 3.980
20 N -0.921 5.921
21 Si 0.890 3.110
22 H -0.287 1.287
23 H -0.304 1.304
24 H -0.268 1.268
25 C 0.116 3.884
26 C 0.124 3.876
27 N -0.260 5.260
28 N -0.475 5.475
29 H 0.436 0.564
30 H 0.079 0.921
31 H 0.070 0.930
32 H 0.086 0.914
33 H 0.146 0.854
34 H 0.106 0.894
35 H 0.112 0.888
36 H 0.063 0.937
37 H 0.080 0.920
38 H 0.072 0.928
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.060 0.940
42 H 0.068 0.932
43 H 0.053 0.947
44 H 0.051 0.949
45 H 0.088 0.912
46 H 0.046 0.954
47 H 0.026 0.974
48 H 0.262 0.738
49 H 0.033 0.967
50 H 0.060 0.940
51 H 0.085 0.915
52 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.211 0.131 -26.908 28.441
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.047 4.047
3 C -0.294 4.294
4 C -0.079 4.079
5 C -0.103 4.103
6 C 0.300 3.700
7 O -0.383 6.383
8 N -0.337 5.337
9 C -0.016 4.016
10 C -0.169 4.169
11 C -0.151 4.151
12 C -0.136 4.136
13 C -0.082 4.082
14 C -0.179 4.179
15 C 0.006 3.994
16 N -0.333 5.333
17 C -0.357 4.357
18 H 0.106 0.894
19 C -0.178 4.178
20 N -0.565 5.565
21 Si 0.721 3.279
22 H -0.214 1.214
23 H -0.232 1.232
24 H -0.193 1.193
25 C -0.010 4.010
26 C 0.000 4.000
27 N -0.083 5.083
28 N -0.184 5.184
29 H 0.279 0.721
30 H 0.097 0.903
31 H 0.089 0.911
32 H 0.105 0.895
33 H 0.164 0.836
34 H 0.124 0.876
35 H 0.130 0.870
36 H 0.082 0.918
37 H 0.098 0.902
38 H 0.091 0.909
39 H 0.086 0.914
40 H 0.085 0.915
41 H 0.079 0.921
42 H 0.086 0.914
43 H 0.072 0.928
44 H 0.070 0.930
45 H 0.106 0.894
46 H 0.065 0.935
47 H 0.043 0.957
48 H 0.072 0.928
49 H 0.051 0.949
50 H 0.078 0.922
51 H 0.103 0.897
52 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -8.541 -1.333 -26.198 27.587
hybrid contribution 0.304 -0.230 -0.161 0.414
sum -8.237 -1.563 -26.359 27.660
Atomic orbital electron populations
1.20447 0.87358 1.04078 1.03188 1.21071 0.94542 0.87795 1.01297
1.21069 0.91377 0.99171 1.17753 1.21493 0.94421 0.91593 1.00383
1.20132 0.91972 0.99197 0.98996 1.20263 0.81533 0.82076 0.86154
1.90760 1.72014 1.29343 1.46207 1.47686 1.22578 1.40942 1.22449
1.22079 1.00137 0.89507 0.89874 1.21846 1.00418 0.96159 0.98515
1.21064 0.99948 0.99807 0.94329 1.20334 0.99584 0.95915 0.97721
1.21013 0.97177 0.94790 0.95230 1.23055 0.94307 1.00709 0.99783
1.21631 0.90708 0.96623 0.90448 1.45233 1.01209 1.78914 1.07915
1.18653 1.04022 1.29818 0.83212 0.89388 1.25235 0.98661 0.98886
0.95026 1.69733 1.28469 1.46404 1.11921 0.86822 0.81672 0.82256
0.77153 1.21433 1.23178 1.19266 1.22189 0.92996 0.97614 0.88214
1.21731 0.94290 1.00361 0.83569 1.77409 0.95594 1.12398 1.22854
1.46326 1.04186 1.08169 1.59754 0.72071 0.90284 0.91119 0.89504
0.83589 0.87583 0.86989 0.91841 0.90206 0.90907 0.91413 0.91501
0.92121 0.91371 0.92841 0.93019 0.89436 0.93506 0.95650 0.92806
0.94917 0.92201 0.89675 0.91272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.50 10.43 36.00 0.38 -0.13 16
2 C 0.08 0.78 7.21 -82.26 -0.59 0.18 16
3 C -0.26 -2.83 10.64 -40.02 -0.43 -3.25 16
4 C 0.09 1.12 6.02 -82.40 -0.50 0.62 16
5 C -0.06 -0.62 4.57 -29.03 -0.13 -0.75 16
6 C 0.51 7.13 5.89 -10.98 -0.06 7.06 16
7 O -0.51 -9.43 13.04 5.56 0.07 -9.36 16
8 N -0.60 -7.51 2.03 -172.34 -0.35 -7.86 16
9 C 0.11 0.89 6.01 -2.78 -0.02 0.87 16
10 C -0.13 -1.14 5.71 -27.12 -0.15 -1.29 16
11 C -0.11 -1.31 5.35 -28.00 -0.15 -1.46 16
12 C -0.10 -1.52 3.86 -29.77 -0.11 -1.64 16
13 C -0.08 -1.41 0.67 -155.01 -0.10 -1.51 16
14 C -0.14 -2.62 5.19 -25.34 -0.13 -2.75 16
15 C 0.13 2.99 7.23 -2.41 -0.02 2.97 16
16 N -0.61 -15.70 3.10 -168.87 -0.52 -16.22 16
17 C -0.23 -6.84 10.79 -15.05 -0.16 -7.00 16
18 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16
19 C 0.02 0.61 5.50 -17.43 -0.10 0.51 16
20 N -0.92 -29.41 13.97 55.49 0.78 -28.64 16
21 Si 0.89 23.70 24.57 -169.99 -4.18 19.52 16
22 H -0.29 -7.29 6.62 56.52 0.37 -6.92 16
23 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16
24 H -0.27 -7.07 6.05 56.52 0.34 -6.73 16
25 C 0.12 2.64 3.78 -2.42 -0.01 2.63 16
26 C 0.12 1.90 4.38 -4.08 -0.02 1.89 16
27 N -0.26 -3.71 12.04 33.67 0.41 -3.30 16
28 N -0.48 -5.16 7.36 33.48 0.25 -4.91 16
29 H 0.44 3.40 8.96 -182.61 -1.64 1.76 16
30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16
31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16
34 H 0.11 0.82 7.78 -51.93 -0.40 0.41 16
35 H 0.11 0.84 7.67 -51.93 -0.40 0.44 16
36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
37 H 0.08 0.48 5.77 -51.93 -0.30 0.18 16
38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
39 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16
40 H 0.07 0.80 6.07 -51.93 -0.31 0.49 16
41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
43 H 0.05 0.79 7.37 -51.93 -0.38 0.41 16
44 H 0.05 0.93 6.96 -51.93 -0.36 0.57 16
45 H 0.09 1.61 3.01 -51.93 -0.16 1.45 16
46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
48 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16
49 H 0.03 0.78 5.73 -51.93 -0.30 0.48 16
50 H 0.06 1.43 5.55 -51.93 -0.29 1.14 16
51 H 0.08 1.53 6.81 -51.93 -0.35 1.18 16
52 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16
LS Contribution 383.90 15.07 5.79 5.79
Total: -1.00 -37.99 383.90 -9.64 -47.63
By element:
Atomic # 1 Polarization: 9.96 SS G_CDS: -9.57 Total: 0.39 kcal
Atomic # 6 Polarization: -0.74 SS G_CDS: -2.31 Total: -3.05 kcal
Atomic # 7 Polarization: -61.47 SS G_CDS: 0.55 Total: -60.92 kcal
Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal
Atomic # 14 Polarization: 23.70 SS G_CDS: -4.18 Total: 19.52 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -37.99 -9.64 -47.63 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001045927912.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.036 kcal
(2) G-P(sol) polarization free energy of solvation -37.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds