Wall clock time and date at job start Wed Apr 1 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35313 * 126.13046 * 2 1 4 4 C 1.39866 * 107.91860 * 180.28862 * 3 2 1 5 5 C 1.50706 * 125.89447 * 179.73872 * 4 3 2 6 6 C 1.50698 * 109.46922 * 124.99994 * 5 4 3 7 7 O 1.21280 * 120.00419 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99777 * 180.02562 * 6 5 4 9 9 C 1.47564 * 118.63558 * 353.46421 * 8 6 5 10 10 C 1.54300 * 111.97923 * 137.75986 * 9 8 6 11 11 C 1.50876 * 110.30786 * 319.64656 * 10 9 8 12 12 C 1.52612 * 109.37508 * 91.76155 * 11 10 9 13 13 C 1.47078 * 114.26322 * 275.26035 * 12 11 10 14 14 C 1.54252 * 112.34804 * 301.71790 * 13 12 11 15 15 C 1.54399 * 104.95086 * 237.63052 * 14 13 12 16 16 N 1.48140 * 104.61561 * 23.87092 * 15 14 13 17 17 C 1.36944 * 127.83237 * 140.43201 * 16 15 14 18 18 H 1.07989 * 120.00002 * 331.46205 * 17 16 15 19 19 C 1.38816 * 119.99769 * 151.45803 * 17 16 15 20 20 N 1.31614 * 119.99869 * 170.50451 * 19 17 16 21 21 Si 1.86798 * 119.99992 * 350.50804 * 19 17 16 22 22 H 1.48505 * 109.47161 * 85.61361 * 21 19 17 23 23 H 1.48502 * 109.47039 * 205.61140 * 21 19 17 24 24 H 1.48496 * 109.47544 * 325.61073 * 21 19 17 25 25 C 1.48158 * 104.33515 * 320.43723 * 16 15 14 26 26 C 1.44590 * 118.63400 * 173.73994 * 8 6 5 27 27 N 1.30839 * 108.20789 * 359.55200 * 4 3 2 28 28 N 1.34955 * 126.12326 * 180.02562 * 2 1 3 29 29 H 0.97000 * 126.03391 * 359.95429 * 28 2 1 30 30 H 1.09002 * 109.47566 * 89.99667 * 1 2 3 31 31 H 1.08998 * 109.47387 * 210.00026 * 1 2 3 32 32 H 1.09005 * 109.46846 * 329.99741 * 1 2 3 33 33 H 1.08001 * 126.03819 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47140 * 244.99505 * 5 4 3 35 35 H 1.08995 * 109.47490 * 4.99665 * 5 4 3 36 36 H 1.09001 * 108.94051 * 258.56973 * 9 8 6 37 37 H 1.09006 * 108.93771 * 17.17448 * 9 8 6 38 38 H 1.08995 * 109.35419 * 199.34820 * 10 9 8 39 39 H 1.08998 * 109.09773 * 79.78248 * 10 9 8 40 40 H 1.09001 * 109.48532 * 331.79235 * 11 10 9 41 41 H 1.08995 * 109.48922 * 211.73916 * 11 10 9 42 42 H 1.09004 * 108.52501 * 154.02417 * 12 11 10 43 43 H 1.09001 * 108.40249 * 36.41203 * 12 11 10 44 44 H 1.09004 * 110.34213 * 356.49658 * 14 13 12 45 45 H 1.09001 * 110.35028 * 118.76053 * 14 13 12 46 46 H 1.08997 * 110.40813 * 142.66052 * 15 14 13 47 47 H 1.09000 * 110.40542 * 264.97053 * 15 14 13 48 48 H 0.97006 * 120.00263 * 180.02562 * 20 19 17 49 49 H 1.08998 * 110.40444 * 280.76302 * 25 16 15 50 50 H 1.09001 * 110.40610 * 158.32736 * 25 16 15 51 51 H 1.09000 * 109.47381 * 30.55985 * 26 8 6 52 52 H 1.08998 * 109.46827 * 150.55299 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6334 0.6558 -0.0067 5 6 4.8543 1.5393 -0.0146 6 6 5.7453 1.1752 1.1449 7 8 5.4208 0.2862 1.9033 8 7 6.9025 1.8383 1.3397 9 6 7.3392 2.8128 0.3212 10 6 7.8985 4.1022 0.9580 11 6 7.0627 4.5034 2.1484 12 6 7.6517 3.8836 3.4125 13 6 7.2085 2.5056 3.6730 14 6 5.6751 2.3966 3.7995 15 6 5.4329 1.7888 5.1980 16 7 6.6492 2.1326 5.9707 17 6 6.7293 2.5256 7.2801 18 1 5.9033 3.0491 7.7382 19 6 7.8723 2.2510 8.0184 20 7 8.0298 2.7859 9.2106 21 14 9.1867 1.1224 7.3200 22 1 10.1140 1.9100 6.4684 23 1 9.9461 0.4986 8.4332 24 1 8.5450 0.0613 6.5030 25 6 7.7593 1.9550 5.0057 26 6 7.6674 1.5609 2.5349 27 7 3.6334 -0.6526 -0.0009 28 7 2.3026 -1.0901 -0.0005 29 1 2.0054 -2.0134 -0.0003 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9741 2.1210 0.0004 34 1 5.3981 1.3992 -0.9488 35 1 4.5489 2.5818 0.0751 36 1 8.1116 2.3558 -0.2974 37 1 6.4886 3.0698 -0.3102 38 1 7.8851 4.9046 0.2204 39 1 8.9245 3.9248 1.2804 40 1 6.0411 4.1488 2.0115 41 1 7.0614 5.5893 2.2424 42 1 7.3731 4.5038 4.2645 43 1 8.7381 3.8871 3.3235 44 1 5.2181 3.3839 3.7311 45 1 5.2767 1.7394 3.0265 46 1 4.5513 2.2344 5.6586 47 1 5.3183 0.7071 5.1276 48 1 8.8287 2.5943 9.7265 49 1 8.0107 0.8991 4.9058 50 1 8.6323 2.5263 5.3212 51 1 7.5082 0.5254 2.8360 52 1 8.7265 1.7220 2.3340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045927912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:27 Heat of formation + Delta-G solvation = 52.725406 kcal Electronic energy + Delta-G solvation = -32534.720689 eV Core-core repulsion = 28535.878916 eV Total energy + Delta-G solvation = -3998.841773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.33730 -41.80538 -39.57235 -37.62193 -35.10120 -34.35114 -34.23634 -32.97575 -32.38809 -30.64560 -29.95517 -28.62440 -27.78899 -26.81022 -26.00734 -24.87029 -22.43422 -22.35172 -21.52632 -21.19352 -19.86851 -19.30223 -18.98960 -18.38989 -18.01332 -17.57067 -16.86535 -16.78718 -16.13181 -15.86938 -15.53747 -15.38775 -15.16526 -14.73596 -14.71716 -14.53237 -14.43235 -14.14254 -14.12338 -13.95713 -13.70448 -13.53564 -13.39912 -13.17178 -13.11864 -12.90550 -12.75332 -12.59217 -12.48614 -12.22845 -12.03635 -11.87348 -11.68736 -11.51114 -11.43081 -11.23169 -11.19732 -11.12939 -10.93126 -10.68752 -10.19358 -9.47250 -9.42460 -9.01779 -8.22886 -5.59747 1.01058 1.21360 1.32184 1.41631 1.68555 1.79282 2.03590 2.25215 2.34915 3.06197 3.24574 3.54795 3.61636 3.72405 3.77797 3.93854 4.02985 4.06282 4.19690 4.22434 4.36544 4.40964 4.41989 4.46154 4.47556 4.52515 4.58545 4.68747 4.74154 4.77923 4.79179 4.79357 4.85888 4.90431 4.91619 5.08479 5.11906 5.13839 5.14725 5.27523 5.31321 5.32558 5.37383 5.40233 5.55247 5.58426 5.74015 5.74194 5.78775 6.06669 6.48763 6.50837 6.65768 6.82774 7.32203 7.43543 8.15597 8.98026 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003466 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.835002 B = 8076.631253 C = 9220.866559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.084 3.916 3 C -0.285 4.285 4 C 0.075 3.925 5 C -0.055 4.055 6 C 0.507 3.493 7 O -0.564 6.564 8 N -0.599 5.599 9 C 0.099 3.901 10 C -0.126 4.126 11 C -0.107 4.107 12 C -0.097 4.097 13 C -0.067 4.067 14 C -0.125 4.125 15 C 0.127 3.873 16 N -0.626 5.626 17 C -0.228 4.228 18 H 0.054 0.946 19 C -0.034 4.034 20 N -0.962 5.962 21 Si 0.951 3.049 22 H -0.264 1.264 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.112 3.888 26 C 0.133 3.867 27 N -0.314 5.314 28 N -0.480 5.480 29 H 0.443 0.557 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.040 0.960 47 H 0.010 0.990 48 H 0.264 0.736 49 H 0.024 0.976 50 H 0.048 0.952 51 H 0.053 0.947 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 1.356 -31.365 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.314 4.314 4 C -0.092 4.092 5 C -0.096 4.096 6 C 0.296 3.704 7 O -0.444 6.444 8 N -0.331 5.331 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.144 4.144 12 C -0.134 4.134 13 C -0.070 4.070 14 C -0.163 4.163 15 C 0.002 3.998 16 N -0.351 5.351 17 C -0.357 4.357 18 H 0.071 0.929 19 C -0.228 4.228 20 N -0.609 5.609 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.232 1.232 24 H -0.195 1.195 25 C -0.014 4.014 26 C 0.008 3.992 27 N -0.138 5.138 28 N -0.190 5.190 29 H 0.288 0.712 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.185 0.815 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.392 -0.081 -30.728 31.854 hybrid contribution 0.127 -0.615 1.262 1.409 sum -8.264 -0.696 -29.466 30.611 Atomic orbital electron populations 1.20582 0.84500 1.04977 1.04703 1.21746 0.96278 0.87158 0.99297 1.21458 0.90933 1.00565 1.18455 1.21990 0.95985 0.91465 0.99784 1.20289 0.90686 1.00343 0.98292 1.20996 0.81778 0.81123 0.86467 1.90744 1.73319 1.31849 1.48477 1.47763 1.21826 1.41508 1.21960 1.22478 1.02305 0.88425 0.88974 1.21832 0.99365 0.97275 0.97917 1.21013 1.00030 1.00152 0.93227 1.20357 1.00462 0.93748 0.98877 1.20904 0.95862 0.96729 0.93502 1.22950 0.95407 1.00891 0.97022 1.21746 0.89582 0.95942 0.92538 1.45323 1.03403 1.79040 1.07376 1.18546 1.03010 1.28920 0.85216 0.92857 1.25874 1.01083 1.00386 0.95461 1.69861 1.29548 1.48040 1.13451 0.85833 0.79321 0.80247 0.76611 1.19019 1.23176 1.19452 1.22274 0.91868 0.97106 0.90120 1.21386 0.95861 0.97738 0.84166 1.77319 0.97535 1.13794 1.25111 1.46398 1.03690 1.09114 1.59768 0.71154 0.88323 0.90213 0.88585 0.81458 0.84611 0.83662 0.89681 0.86878 0.87427 0.91766 0.91680 0.90963 0.94935 0.91952 0.92086 0.88375 0.94129 0.97222 0.92686 0.95869 0.93385 0.92830 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.43 71.24 0.74 -0.02 16 2 C 0.08 1.47 7.21 41.40 0.30 1.77 16 3 C -0.29 -5.50 10.64 21.99 0.23 -5.27 16 4 C 0.07 1.75 6.02 43.10 0.26 2.01 16 5 C -0.06 -0.92 4.57 29.10 0.13 -0.79 16 6 C 0.51 13.01 5.89 87.66 0.52 13.52 16 7 O -0.56 -20.96 13.04 -3.03 -0.04 -21.00 16 8 N -0.60 -13.02 2.03 -817.55 -1.66 -14.68 16 9 C 0.10 1.10 6.01 86.62 0.52 1.63 16 10 C -0.13 -1.50 5.71 30.34 0.17 -1.32 16 11 C -0.11 -2.05 5.35 29.77 0.16 -1.89 16 12 C -0.10 -2.85 3.86 28.62 0.11 -2.74 16 13 C -0.07 -2.34 0.67 -52.50 -0.04 -2.37 16 14 C -0.12 -4.63 5.19 31.49 0.16 -4.47 16 15 C 0.13 5.99 7.23 86.54 0.63 6.62 16 16 N -0.63 -33.51 3.10 -688.19 -2.13 -35.64 16 17 C -0.23 -14.24 10.79 84.03 0.91 -13.34 16 18 H 0.05 3.61 8.06 -2.92 -0.02 3.59 16 19 C -0.03 -2.11 5.50 84.86 0.47 -1.64 16 20 N -0.96 -63.57 13.97 21.65 0.30 -63.27 16 21 Si 0.95 50.24 24.57 68.60 1.69 51.92 16 22 H -0.26 -12.89 6.62 99.48 0.66 -12.23 16 23 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 24 H -0.27 -14.15 6.05 99.48 0.60 -13.55 16 25 C 0.11 5.13 3.78 86.52 0.33 5.45 16 26 C 0.13 3.88 4.38 87.37 0.38 4.27 16 27 N -0.31 -8.85 12.04 -47.38 -0.57 -9.42 16 28 N -0.48 -10.17 7.36 -48.00 -0.35 -10.53 16 29 H 0.44 6.90 8.96 -213.33 -1.91 4.99 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.14 1.45 7.78 -2.39 -0.02 1.43 16 35 H 0.15 1.42 7.67 -2.39 -0.02 1.40 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 0.58 5.77 -2.38 -0.01 0.56 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.86 7.32 -2.39 -0.02 0.85 16 40 H 0.06 1.29 6.07 -2.39 -0.01 1.28 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.71 7.37 -2.39 -0.02 1.70 16 44 H 0.06 2.14 6.96 -2.38 -0.02 2.12 16 45 H 0.10 3.56 3.01 -2.39 -0.01 3.56 16 46 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 49 H 0.02 1.12 5.73 -2.39 -0.01 1.11 16 50 H 0.05 2.30 5.55 -2.39 -0.01 2.28 16 51 H 0.05 1.93 6.81 -2.39 -0.02 1.92 16 52 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 Total: -1.00 -89.59 383.90 2.09 -87.49 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -1.12 Total: 13.71 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.98 Total: 1.42 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -4.41 Total: -133.54 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.69 Total: 51.92 kcal Total: -89.59 2.09 -87.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045927912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.218 kcal (2) G-P(sol) polarization free energy of solvation -89.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds