Wall clock time and date at job start Wed Apr 1 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33319 * 126.11152 * 2 1 4 4 C 1.30854 * 109.68861 * 180.27968 * 3 2 1 5 5 N 1.34498 * 109.16260 * 359.76056 * 4 3 2 6 6 C 1.46504 * 126.47298 * 180.02562 * 5 4 3 7 7 C 1.36671 * 126.10588 * 179.87936 * 2 1 3 8 8 C 1.46764 * 126.84136 * 359.97438 * 7 2 1 9 9 O 1.21688 * 119.99736 * 89.34996 * 8 7 2 10 10 N 1.34768 * 120.00223 * 269.34341 * 8 7 2 11 11 C 1.47558 * 118.64343 * 354.40092 * 10 8 7 12 12 C 1.53938 * 112.18550 * 137.88424 * 11 10 8 13 13 C 1.50881 * 110.18373 * 319.35288 * 12 11 10 14 14 C 1.52632 * 109.39505 * 91.83301 * 13 12 11 15 15 C 1.47104 * 114.23694 * 275.32066 * 14 13 12 16 16 C 1.54240 * 112.30951 * 183.85133 * 15 14 13 17 17 C 1.54411 * 104.91873 * 122.26173 * 16 15 14 18 18 N 1.48173 * 104.54024 * 24.12481 * 17 16 15 19 19 C 1.36941 * 127.88076 * 140.10489 * 18 17 16 20 20 H 1.08005 * 119.99556 * 204.45676 * 19 18 17 21 21 C 1.38808 * 119.99766 * 24.45417 * 19 18 17 22 22 N 1.31615 * 120.00429 * 5.21217 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 185.21549 * 21 19 18 24 24 H 1.48501 * 109.47059 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47319 * 120.00038 * 23 21 19 26 26 H 1.48503 * 109.47168 * 240.00228 * 23 21 19 27 27 C 1.48170 * 104.24157 * 320.10331 * 18 17 16 28 28 C 1.44601 * 118.64438 * 174.41992 * 10 8 7 29 29 H 1.08999 * 109.47316 * 270.12427 * 1 2 3 30 30 H 1.08997 * 109.46995 * 30.12021 * 1 2 3 31 31 H 1.08998 * 109.47322 * 150.11746 * 1 2 3 32 32 H 1.07999 * 125.42264 * 179.74496 * 4 3 2 33 33 H 1.08998 * 109.46990 * 274.96337 * 6 5 4 34 34 H 1.08994 * 109.46917 * 34.96758 * 6 5 4 35 35 H 1.09000 * 109.46738 * 154.96371 * 6 5 4 36 36 H 1.08999 * 108.93754 * 258.58332 * 11 10 8 37 37 H 1.09000 * 108.93596 * 17.19098 * 11 10 8 38 38 H 1.09003 * 109.35204 * 79.56889 * 12 11 10 39 39 H 1.09004 * 109.35030 * 199.13074 * 12 11 10 40 40 H 1.08998 * 109.47808 * 331.85602 * 13 12 11 41 41 H 1.09004 * 109.49471 * 211.81701 * 13 12 11 42 42 H 1.08998 * 108.53070 * 154.09855 * 14 13 12 43 43 H 1.08998 * 108.41426 * 36.46856 * 14 13 12 44 44 H 1.08996 * 110.35049 * 241.12344 * 16 15 14 45 45 H 1.09000 * 110.35106 * 3.39882 * 16 15 14 46 46 H 1.08995 * 110.42267 * 142.89494 * 17 16 15 47 47 H 1.09000 * 110.42269 * 265.36092 * 17 16 15 48 48 H 0.97001 * 120.00441 * 179.97438 * 22 21 19 49 49 H 1.09007 * 110.42066 * 281.05733 * 27 18 17 50 50 H 1.08997 * 110.42370 * 158.59039 * 27 18 17 51 51 H 1.08998 * 109.47129 * 30.58360 * 28 10 8 52 52 H 1.08998 * 109.47260 * 150.59627 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0060 5 7 3.6121 -0.6363 -0.0048 6 6 4.8305 -1.4499 -0.0096 7 6 2.3123 -1.1042 0.0023 8 6 1.8819 -2.5073 0.0058 9 8 1.6917 -3.0880 -1.0466 10 7 1.6975 -3.1527 1.1744 11 6 2.0561 -2.4621 2.4281 12 6 1.0069 -2.6812 3.5331 13 6 -0.3837 -2.6100 2.9520 14 6 -0.8366 -4.0106 2.5481 15 6 -0.3891 -4.4276 1.2103 16 6 -0.9491 -5.8077 0.8094 17 6 -1.7223 -5.5570 -0.5034 18 7 -1.1042 -4.3361 -1.0718 19 6 -0.8151 -4.0729 -2.3842 20 1 -0.0397 -3.3640 -2.6346 21 6 -1.5185 -4.7173 -3.3925 22 7 -2.5307 -5.5026 -3.0906 23 14 -1.0284 -4.4701 -5.1780 24 1 0.1324 -3.5466 -5.2494 25 1 -0.6583 -5.7783 -5.7755 26 1 -2.1700 -3.8883 -5.9287 27 6 -0.8704 -3.4649 0.1037 28 6 1.1568 -4.4936 1.1480 29 1 -0.3634 0.0022 1.0276 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8910 -0.5120 32 1 4.3970 1.3743 -0.0114 33 1 5.1772 -1.5789 -1.0349 34 1 5.6030 -0.9507 0.5752 35 1 4.6176 -2.4255 0.4274 36 1 3.0191 -2.8366 2.7754 37 1 2.1442 -1.3938 2.2308 38 1 1.1591 -3.6606 3.9867 39 1 1.1195 -1.9108 4.2959 40 1 -0.3785 -1.9626 2.0751 41 1 -1.0693 -2.2071 3.6975 42 1 -1.9257 -4.0436 2.5750 43 1 -0.4514 -4.7212 3.2794 44 1 -0.1350 -6.5127 0.6412 45 1 -1.6225 -6.1821 1.5804 46 1 -1.5980 -6.3987 -1.1847 47 1 -2.7788 -5.3872 -0.2961 48 1 -3.0224 -5.9526 -3.7953 49 1 -1.7963 -2.9737 0.4032 50 1 -0.1010 -2.7253 -0.1180 51 1 1.4625 -4.9905 0.2272 52 1 1.5315 -5.0534 2.0048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045946332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:30 Heat of formation + Delta-G solvation = 71.505535 kcal Electronic energy + Delta-G solvation = -34203.814466 eV Core-core repulsion = 30205.787061 eV Total energy + Delta-G solvation = -3998.027405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27988 -40.43093 -37.78549 -36.10802 -34.49256 -33.53453 -32.72185 -31.28959 -30.46550 -28.75538 -28.46028 -26.76852 -25.96336 -25.76930 -24.90269 -23.29799 -21.96244 -20.86529 -20.48195 -20.11099 -18.90937 -18.07986 -17.50351 -16.87691 -16.37593 -15.83011 -15.47298 -15.42000 -14.80412 -14.59530 -14.42525 -14.10178 -13.76058 -13.57375 -13.48814 -13.25146 -13.08245 -13.01210 -12.64100 -12.42793 -12.31002 -12.15037 -12.06456 -11.96246 -11.84825 -11.36260 -11.14843 -10.85334 -10.82305 -10.68873 -10.56457 -10.30748 -10.21283 -9.98296 -9.89570 -9.68656 -9.60909 -9.53937 -9.48652 -9.34942 -8.39200 -8.31230 -8.24227 -6.46911 -5.56201 -2.90200 1.76773 2.32942 2.92865 3.04254 3.33925 3.51964 3.58353 3.63881 4.45872 4.47538 4.55404 4.66095 4.69356 4.87275 4.88860 5.02001 5.11757 5.15474 5.17727 5.20190 5.36358 5.43910 5.58311 5.62491 5.67999 5.73204 5.80082 5.86731 5.90314 5.96382 6.04648 6.07725 6.13968 6.16999 6.25140 6.26905 6.31058 6.37390 6.49752 6.55044 6.64626 6.69699 6.87884 6.93472 7.00934 7.06833 7.09252 7.50538 7.52306 7.73025 7.99844 8.06943 8.47049 8.49354 9.41682 10.01371 10.82628 11.60037 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.005429 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.419856 B = 5156.578434 C = 6753.124176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.057 3.943 3 N -0.491 5.491 4 C 0.189 3.811 5 N -0.443 5.443 6 C 0.072 3.928 7 C -0.064 4.064 8 C 0.577 3.423 9 O -0.472 6.472 10 N -0.596 5.596 11 C 0.111 3.889 12 C -0.127 4.127 13 C -0.119 4.119 14 C -0.094 4.094 15 C -0.091 4.091 16 C -0.131 4.131 17 C 0.160 3.840 18 N -0.581 5.581 19 C -0.196 4.196 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.132 3.868 28 C 0.134 3.866 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.208 0.792 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.019 0.981 48 H 0.248 0.752 49 H 0.009 0.991 50 H 0.061 0.939 51 H 0.091 0.909 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.651 7.254 16.399 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 N -0.210 5.210 4 C -0.092 4.092 5 N -0.127 5.127 6 C -0.071 4.071 7 C -0.180 4.180 8 C 0.362 3.638 9 O -0.342 6.342 10 N -0.330 5.330 11 C -0.012 4.012 12 C -0.165 4.165 13 C -0.156 4.156 14 C -0.132 4.132 15 C -0.094 4.094 16 C -0.170 4.170 17 C 0.034 3.966 18 N -0.303 5.303 19 C -0.325 4.325 20 H 0.098 0.902 21 C -0.207 4.207 22 N -0.569 5.569 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.005 3.995 28 C 0.011 3.989 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.079 0.921 51 H 0.109 0.891 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.379 7.552 15.550 21.859 hybrid contribution 0.626 -0.715 -0.876 1.292 sum 14.005 6.837 14.674 21.406 Atomic orbital electron populations 1.20300 0.86959 1.04141 1.02459 1.20842 0.96426 0.86670 1.03615 1.69994 1.00300 1.30284 1.20424 1.24887 0.97187 0.81631 1.05490 1.45273 1.05868 1.07670 1.53857 1.22098 0.84669 0.96155 1.04157 1.20904 0.84477 0.95603 1.17027 1.16985 0.78629 0.83653 0.84580 1.91104 1.47406 1.65429 1.30274 1.47659 1.64023 1.16042 1.05259 1.21879 0.97156 0.97545 0.84592 1.21731 0.95419 1.02311 0.97045 1.21102 0.95290 0.98265 1.00963 1.20374 1.00959 0.95668 0.96213 1.21095 0.94618 0.98224 0.95476 1.22782 0.99668 0.94528 1.00064 1.21407 0.93354 0.91763 0.90070 1.44728 1.71313 1.12776 1.01503 1.19143 1.11693 1.21987 0.79640 0.90228 1.25009 0.96716 1.01380 0.97639 1.69922 1.21705 1.34486 1.30774 0.86178 0.77578 0.77259 0.85723 1.20388 1.22070 1.22028 1.21959 0.96853 0.93130 0.87509 1.21701 0.93230 0.81412 1.02530 0.91118 0.90664 0.89917 0.77594 0.89999 0.89132 0.89716 0.92628 0.90430 0.91545 0.91120 0.91070 0.92120 0.92300 0.92911 0.92697 0.92958 0.91144 0.96297 0.94192 0.97308 0.92133 0.89056 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.15 36.00 0.37 -0.90 16 2 C 0.06 0.91 7.01 -82.52 -0.58 0.33 16 3 N -0.49 -7.33 11.20 -10.64 -0.12 -7.45 16 4 C 0.19 2.16 12.52 -90.57 -1.13 1.03 16 5 N -0.44 -5.26 3.17 -121.97 -0.39 -5.64 16 6 C 0.07 0.56 11.07 59.85 0.66 1.23 16 7 C -0.06 -0.98 4.50 -82.14 -0.37 -1.35 16 8 C 0.58 9.95 4.40 -12.82 -0.06 9.89 16 9 O -0.47 -10.56 13.17 5.20 0.07 -10.49 16 10 N -0.60 -8.53 2.00 -174.08 -0.35 -8.88 16 11 C 0.11 1.20 6.02 -2.97 -0.02 1.18 16 12 C -0.13 -1.22 5.70 -27.31 -0.16 -1.37 16 13 C -0.12 -1.40 5.45 -27.98 -0.15 -1.56 16 14 C -0.09 -1.29 3.83 -29.75 -0.11 -1.40 16 15 C -0.09 -1.55 0.67 -154.99 -0.10 -1.66 16 16 C -0.13 -2.45 6.24 -25.34 -0.16 -2.61 16 17 C 0.16 3.94 5.76 -2.38 -0.01 3.92 16 18 N -0.58 -15.22 3.34 -168.81 -0.56 -15.79 16 19 C -0.20 -5.75 9.74 -15.06 -0.15 -5.90 16 20 H 0.08 2.43 6.55 -52.48 -0.34 2.08 16 21 C -0.01 -0.35 5.41 -17.43 -0.09 -0.44 16 22 N -0.92 -28.35 11.24 55.49 0.62 -27.72 16 23 Si 0.90 23.76 29.56 -169.99 -5.02 18.73 16 24 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 27 C 0.13 2.82 4.31 -2.41 -0.01 2.81 16 28 C 0.13 2.10 4.23 -4.08 -0.02 2.08 16 29 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.52 6.04 -51.93 -0.31 1.21 16 32 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.89 6.12 -51.93 -0.32 0.57 16 38 H 0.07 0.60 7.32 -51.93 -0.38 0.22 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.99 5.77 -51.93 -0.30 0.69 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 44 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 45 H 0.05 0.87 7.79 -51.93 -0.40 0.46 16 46 H 0.07 1.94 7.03 -51.93 -0.37 1.57 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.01 0.21 7.96 -51.93 -0.41 -0.21 16 50 H 0.06 1.28 1.87 -51.93 -0.10 1.18 16 51 H 0.09 1.76 7.02 -51.93 -0.36 1.40 16 52 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -36.24 385.26 -10.27 -46.51 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.23 Total: -0.36 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -2.10 Total: 5.29 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.79 Total: -65.48 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.24 -10.27 -46.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045946332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.012 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds